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The map label for this gene is rbfA

Identifier: 21672639

GI number: 21672639

Start: 415871

End: 416245

Strand: Reverse

Name: rbfA

Synonym: BUsg364

Alternate gene names: 21672639

Gene position: 416245-415871 (Counterclockwise)

Preceding gene: 21672640

Following gene: 21672638

Centisome position: 64.89

GC content: 21.87

Gene sequence:

>375_bases
ATGGACAAATTGTTTAATCGATCTTTTAGAATTGCTCAAGAACTACAAAAAAATATTGCTTTTATTATACAACATTCTCT
TAAAGATCCACGTATTAAAACTATTATCACTGTTTCTGAAGTGCGATTATCAAAAGATTTATCTTATGCTCAAGTATTTG
TTAGTTTTTTAGAAACTAATAGTAATTTAACTGTAAAAAAAGTATTAATTTTATTAAATAGAGCTTCTGGATACATTCGA
AAATTATTATGTAAAAAAATGAATTTAAGAATTATTCCAATTATTGTTTTTTTTCATGATGATTCCTTTTTTAAAGGTAA
CAAAATTTCTAAATTGTTAAATATATTAACAGAGAAGAATAACATTACATTATGA

Upstream 100 bases:

>100_bases
ATAGAAGTATTTGAAGTTAAAGAAATAAAAAGAATACTATAAATTTAAATTTATAGACAATTATATCTTTTTAGAATATT
TTAAATTTGGTAATAAAATC

Downstream 100 bases:

>100_bases
ATAAAAATATAAGGATAGGTAAATGTTTTTTCATAAAAAACGTAATGTTAATGGATTTTTATTGTTGGACAAGCCTAAGG
GAATGACTTCTAACAATGTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MDKLFNRSFRIAQELQKNIAFIIQHSLKDPRIKTIITVSEVRLSKDLSYAQVFVSFLETNSNLTVKKVLILLNRASGYIR
KLLCKKMNLRIIPIIVFFHDDSFFKGNKISKLLNILTEKNNITL

Sequences:

>Translated_124_residues
MDKLFNRSFRIAQELQKNIAFIIQHSLKDPRIKTIITVSEVRLSKDLSYAQVFVSFLETNSNLTVKKVLILLNRASGYIR
KLLCKKMNLRIIPIIVFFHDDSFFKGNKISKLLNILTEKNNITL
>Mature_124_residues
MDKLFNRSFRIAQELQKNIAFIIQHSLKDPRIKTIITVSEVRLSKDLSYAQVFVSFLETNSNLTVKKVLILLNRASGYIR
KLLCKKMNLRIIPIIVFFHDDSFFKGNKISKLLNILTEKNNITL

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=113, Percent_Identity=47.787610619469, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BUCAP (Q8K9H2)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660706.1
- ProteinModelPortal:   Q8K9H2
- SMR:   Q8K9H2
- EnsemblBacteria:   EBBUCT00000000397
- GeneID:   1005793
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg364
- GeneTree:   EBGT00050000007895
- HOGENOM:   HBG751055
- OMA:   FVYDTSL
- ProtClustDB:   CLSK316038
- BioCyc:   BAPH198804:BUSG364-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14440; Mature: 14440

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLFNRSFRIAQELQKNIAFIIQHSLKDPRIKTIITVSEVRLSKDLSYAQVFVSFLETN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHCC
SNLTVKKVLILLNRASGYIRKLLCKKMNLRIIPIIVFFHDDSFFKGNKISKLLNILTEKN
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCC
NITL
CCCC
>Mature Secondary Structure
MDKLFNRSFRIAQELQKNIAFIIQHSLKDPRIKTIITVSEVRLSKDLSYAQVFVSFLETN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHCC
SNLTVKKVLILLNRASGYIRKLLCKKMNLRIIPIIVFFHDDSFFKGNKISKLLNILTEKN
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCC
NITL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438