| Definition | Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome. |
|---|---|
| Accession | NC_004061 |
| Length | 641,454 |
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The map label for this gene is yceA [C]
Identifier: 21672628
GI number: 21672628
Start: 401233
End: 402171
Strand: Reverse
Name: yceA [C]
Synonym: BUsg353
Alternate gene names: 21672628
Gene position: 402171-401233 (Counterclockwise)
Preceding gene: 21672629
Following gene: 21672624
Centisome position: 62.7
GC content: 23.11
Gene sequence:
>939_bases ATGATGTCAAATTTATGTAATCGTATTTCGAAAAAAGAATTAAAAAAAAAGATATTAATGAATGAAGAATCGCGTATTGT AGTTTCTTTCTACAAATATTTTTTAATAAAAAACACAAAAGAATATAGAGATCGAATTTATCAAAATTTTTATAAATATA ATGTTTTAGGAAGAGTTTATGTATCTGATGAAGGTATTAATGCGCAAATTAGTATTCCTGTAAAATTTTATTTTTTTGTA AAAAATTTTTTATATAATTCTGATTTAGAATTAAATAATTTATTCATTAATAAATCGTTAAGTAATCACAAAAAAGCATT TTGGGTTCTTTCTGTTAAAATTAAAAAAAAGATTGTTAATGATGGTATTACAAATCCATTATTTAATTTTAAAAAAGTAG GTATTTATATCAAATCAAGGCAAGTTAATATGATGTTAAGTGATCGAAATGTAATATTTATTGATATGAGAAATTCTTAT GAGTATGAGATTGGACATTTTCCAAATGCTATAGAAATTAAAAGTCAAACTTTTCGAGAACAATTAAAGAAAGTGATTCA AATTATGCATTATGCTAAAAATAAAAAAATTGTAATGTATTGTACAGGTGGTATTCGTTGTGAAAAAGCTAGCGCTTGGA TGCATTTTAATGGTTTTAAATACGTGTATCATTTAAAGAATGGTATTCTTGGTTATGTTCATGATGCTAACAAAAATGGA TTACCTATTCTTTTCCAAGGAAGTAATTTTGTTTTTGATAATAGAATGAGTGAAAAAATTTCAGATAAGATTATATCCTT TTGTAAACAGTGTGATAAGCCTTCAGATCGATATGTAAATTGCAATTTTAATTTATGTCATCTTCTTTTTATTCAATGTA AAGATTGTACAATAAAATTTAAAAAATGTTGTTCTAAATACTGTATGCAGCATCTATAA
Upstream 100 bases:
>100_bases AAAAAGCTTAAATGAAATATATTTAACACTATCGCAACAATTAGAATCTCTTCATGACGCATTTTGCAAAAAAAATAAAA TTTTTAATTAAAGGTTTTTT
Downstream 100 bases:
>100_bases ATTATTTTTTTAAAAAATAATTTATAATTTTTTTTCTAAATTTTCCCAATATATTAATATTTTTTCTAATTTTTTTTCTT CTATATTAAATTGCTTTACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MMSNLCNRISKKELKKKILMNEESRIVVSFYKYFLIKNTKEYRDRIYQNFYKYNVLGRVYVSDEGINAQISIPVKFYFFV KNFLYNSDLELNNLFINKSLSNHKKAFWVLSVKIKKKIVNDGITNPLFNFKKVGIYIKSRQVNMMLSDRNVIFIDMRNSY EYEIGHFPNAIEIKSQTFREQLKKVIQIMHYAKNKKIVMYCTGGIRCEKASAWMHFNGFKYVYHLKNGILGYVHDANKNG LPILFQGSNFVFDNRMSEKISDKIISFCKQCDKPSDRYVNCNFNLCHLLFIQCKDCTIKFKKCCSKYCMQHL
Sequences:
>Translated_312_residues MMSNLCNRISKKELKKKILMNEESRIVVSFYKYFLIKNTKEYRDRIYQNFYKYNVLGRVYVSDEGINAQISIPVKFYFFV KNFLYNSDLELNNLFINKSLSNHKKAFWVLSVKIKKKIVNDGITNPLFNFKKVGIYIKSRQVNMMLSDRNVIFIDMRNSY EYEIGHFPNAIEIKSQTFREQLKKVIQIMHYAKNKKIVMYCTGGIRCEKASAWMHFNGFKYVYHLKNGILGYVHDANKNG LPILFQGSNFVFDNRMSEKISDKIISFCKQCDKPSDRYVNCNFNLCHLLFIQCKDCTIKFKKCCSKYCMQHL >Mature_312_residues MMSNLCNRISKKELKKKILMNEESRIVVSFYKYFLIKNTKEYRDRIYQNFYKYNVLGRVYVSDEGINAQISIPVKFYFFV KNFLYNSDLELNNLFINKSLSNHKKAFWVLSVKIKKKIVNDGITNPLFNFKKVGIYIKSRQVNMMLSDRNVIFIDMRNSY EYEIGHFPNAIEIKSQTFREQLKKVIQIMHYAKNKKIVMYCTGGIRCEKASAWMHFNGFKYVYHLKNGILGYVHDANKNG LPILFQGSNFVFDNRMSEKISDKIISFCKQCDKPSDRYVNCNFNLCHLLFIQCKDCTIKFKKCCSKYCMQHL
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain
Homologues:
Organism=Homo sapiens, GI111038120, Length=303, Percent_Identity=27.3927392739274, Blast_Score=105, Evalue=4e-23, Organism=Escherichia coli, GI1787294, Length=309, Percent_Identity=52.7508090614887, Blast_Score=351, Evalue=4e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y353_BUCAP (Q8K9I2)
Other databases:
- EMBL: AE013218 - RefSeq: NP_660695.1 - ProteinModelPortal: Q8K9I2 - EnsemblBacteria: EBBUCT00000000050 - GeneID: 1005802 - GenomeReviews: AE013218_GR - KEGG: bas:BUsg353 - GeneTree: EBGT00050000008119 - HOGENOM: HBG366219 - OMA: TTPVMMY - ProtClustDB: PRK00142 - BioCyc: BAPH198804:BUSG353-MONOMER - HAMAP: MF_00469 - InterPro: IPR001763 - InterPro: IPR020936 - Gene3D: G3DSA:3.40.250.10 - SMART: SM00450
Pfam domain/function: PF00581 Rhodanese; SSF52821 Rhodanese-like
EC number: NA
Molecular weight: Translated: 37060; Mature: 37060
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSNLCNRISKKELKKKILMNEESRIVVSFYKYFLIKNTKEYRDRIYQNFYKYNVLGRVY CCHHHHHHHHHHHHHHHHHCCCCCEEHHEEHHHHHHCCCHHHHHHHHHHHHHEEEEEEEE VSDEGINAQISIPVKFYFFVKNFLYNSDLELNNLFINKSLSNHKKAFWVLSVKIKKKIVN EECCCCCEEEEECEEHEEHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEEEEEHHHHHH DGITNPLFNFKKVGIYIKSRQVNMMLSDRNVIFIDMRNSYEYEIGHFPNAIEIKSQTFRE CCCCCCCCCCEEEEEEEEEEEEEEEEECCCEEEEEECCCCEEECCCCCCEEEEHHHHHHH QLKKVIQIMHYAKNKKIVMYCTGGIRCEKASAWMHFNGFKYVYHLKNGILGYVHDANKNG HHHHHHHHHHHCCCCEEEEEECCCEEEECCCEEEEECCEEEEEEECCCCEEEEEECCCCC LPILFQGSNFVFDNRMSEKISDKIISFCKQCDKPSDRYVNCNFNLCHLLFIQCKDCTIKF CEEEEECCCEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEEEECCCEEHH KKCCSKYCMQHL HHHHHHHHHHCC >Mature Secondary Structure MMSNLCNRISKKELKKKILMNEESRIVVSFYKYFLIKNTKEYRDRIYQNFYKYNVLGRVY CCHHHHHHHHHHHHHHHHHCCCCCEEHHEEHHHHHHCCCHHHHHHHHHHHHHEEEEEEEE VSDEGINAQISIPVKFYFFVKNFLYNSDLELNNLFINKSLSNHKKAFWVLSVKIKKKIVN EECCCCCEEEEECEEHEEHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEEEEEHHHHHH DGITNPLFNFKKVGIYIKSRQVNMMLSDRNVIFIDMRNSYEYEIGHFPNAIEIKSQTFRE CCCCCCCCCCEEEEEEEEEEEEEEEEECCCEEEEEECCCCEEECCCCCCEEEEHHHHHHH QLKKVIQIMHYAKNKKIVMYCTGGIRCEKASAWMHFNGFKYVYHLKNGILGYVHDANKNG HHHHHHHHHHHCCCCEEEEEECCCEEEECCCEEEEECCEEEEEEECCCCEEEEEECCCCC LPILFQGSNFVFDNRMSEKISDKIISFCKQCDKPSDRYVNCNFNLCHLLFIQCKDCTIKF CEEEEECCCEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEEEECCCEEHH KKCCSKYCMQHL HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12089438