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The map label for this gene is yocH [H]

Identifier: 30263719

GI number: 30263719

Start: 3517808

End: 3518740

Strand: Reverse

Name: yocH [H]

Synonym: BA_3845

Alternate gene names: 30263719

Gene position: 3518740-3517808 (Counterclockwise)

Preceding gene: 30263720

Following gene: 30263717

Centisome position: 67.31

GC content: 39.01

Gene sequence:

>933_bases
ATGAAAAAATTATTAGGTATAGCAACGGCGGCAGTTTTTGGTCTTGGGATTTTTGCAGGTTCTGCGAAAGCGGAAACGAT
TGTAACAACAGACGTATTAAATGTTAGAGAAAACCCAACTGTAGAGTCAAAGCTTGTAGGTAAAATGTTAAGTGGAAATA
AATTAGATGTTATAAATACAGAAAATGGATGGACAAAAATTAAAGTAAATGGTAAAGAAGCGTTTGTAAGTGCTGAATTT
ACAAAAAGTACATATTATGTAACGGCGGGCGTGTTAAATGTTCGTGCCGGAGCGAATACTGACTCTGAAATCCTTGGTAA
ACTAAATAAAGATGATGTAATTGAAACGACCAATCAAGTTCAAAATGAGTGGTTACAATTTGACTACAATGGAAAAGTTG
GATATGTTCACGTGCCATTTTTAACAGGGACGGCACCTGTGGTTGAAAAGAAAGAAGTTGTAACGCAAGAAGAAGCGCCG
GTAAGAGTGAATGCACCGGTTAAAAATAATAAAGTAGTTAAGAACAAAGAGTCTGTTAAGAATGTGGAATCAAGTAAACC
TGTGGCAAAAGCAAAGCCAGCTGTGCAACAGGTTGCAAAATCTAAGGGAACAAGTGCACCTGCTGGTGGACGTGAAATAA
CAGTGGAAGCGACAGCGTATACAGCGCATCCAAGTGAGAATGGTACGTATGGTGGTCGTGTATTAACTGCAATGGGGCAT
GATTTGACAGCTAATCCAAATATGAAAGTAATTGCTGTTGATCCTAAAGTAATGCCGCTTGGATCAAAAGTATGGGTAGA
AGGATATGGAGAAGCGATTGCTGGAGATACTGGTGGTGCGATTAAAGGAAATCGTATTGATGTTTTAGTTGGCTCAGATG
GTAGTGCTAATAGCTGGGGGCGCAAATCTGTAAAAGTGAAAGTTATAGAGTAG

Upstream 100 bases:

>100_bases
ATCGTATATTACGAATGGTTTGTAATTGTGTGTTTTCTAAAAATCTTAAAAATCCGTTGCTATAATGAAAATACGAAAAC
AAAGCAAATGGAGGCTATTC

Downstream 100 bases:

>100_bases
TATATATGTATTAATATAAAAGGCGGTTGCTTGAAAGTATGTAAGCAACCGCCTTTTATGGATTATTGAAAAGGATAAAT
CGTTTTACCTGTAATAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPTVESKLVGKMLSGNKLDVINTENGWTKIKVNGKEAFVSAEF
TKSTYYVTAGVLNVRAGANTDSEILGKLNKDDVIETTNQVQNEWLQFDYNGKVGYVHVPFLTGTAPVVEKKEVVTQEEAP
VRVNAPVKNNKVVKNKESVKNVESSKPVAKAKPAVQQVAKSKGTSAPAGGREITVEATAYTAHPSENGTYGGRVLTAMGH
DLTANPNMKVIAVDPKVMPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWGRKSVKVKVIE

Sequences:

>Translated_310_residues
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPTVESKLVGKMLSGNKLDVINTENGWTKIKVNGKEAFVSAEF
TKSTYYVTAGVLNVRAGANTDSEILGKLNKDDVIETTNQVQNEWLQFDYNGKVGYVHVPFLTGTAPVVEKKEVVTQEEAP
VRVNAPVKNNKVVKNKESVKNVESSKPVAKAKPAVQQVAKSKGTSAPAGGREITVEATAYTAHPSENGTYGGRVLTAMGH
DLTANPNMKVIAVDPKVMPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWGRKSVKVKVIE
>Mature_310_residues
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPTVESKLVGKMLSGNKLDVINTENGWTKIKVNGKEAFVSAEF
TKSTYYVTAGVLNVRAGANTDSEILGKLNKDDVIETTNQVQNEWLQFDYNGKVGYVHVPFLTGTAPVVEKKEVVTQEEAP
VRVNAPVKNNKVVKNKESVKNVESSKPVAKAKPAVQQVAKSKGTSAPAGGREITVEATAYTAHPSENGTYGGRVLTAMGH
DLTANPNMKVIAVDPKVMPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWGRKSVKVKVIE

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 32825; Mature: 32825

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPTVESKLVGKMLSGNKLDVINT
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEC
ENGWTKIKVNGKEAFVSAEFTKSTYYVTAGVLNVRAGANTDSEILGKLNKDDVIETTNQV
CCCEEEEEECCCEEEEEEEECCCEEEEEEEEEEEECCCCCCHHHHCCCCCCHHHHHHHHH
QNEWLQFDYNGKVGYVHVPFLTGTAPVVEKKEVVTQEEAPVRVNAPVKNNKVVKNKESVK
HHHHEEEEECCCEEEEEEEEECCCCCCCCHHHHHCCCCCCEEEECCCCCCCEECCHHHHH
NVESSKPVAKAKPAVQQVAKSKGTSAPAGGREITVEATAYTAHPSENGTYGGRVLTAMGH
HCCCCCCCHHCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECC
DLTANPNMKVIAVDPKVMPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWG
CEECCCCEEEEEECCCEEECCCEEEEEECCCEECCCCCCCEECCEEEEEECCCCCCCCCC
RKSVKVKVIE
CCEEEEEEEC
>Mature Secondary Structure
MKKLLGIATAAVFGLGIFAGSAKAETIVTTDVLNVRENPTVESKLVGKMLSGNKLDVINT
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEC
ENGWTKIKVNGKEAFVSAEFTKSTYYVTAGVLNVRAGANTDSEILGKLNKDDVIETTNQV
CCCEEEEEECCCEEEEEEEECCCEEEEEEEEEEEECCCCCCHHHHCCCCCCHHHHHHHHH
QNEWLQFDYNGKVGYVHVPFLTGTAPVVEKKEVVTQEEAPVRVNAPVKNNKVVKNKESVK
HHHHEEEEECCCEEEEEEEEECCCCCCCCHHHHHCCCCCCEEEECCCCCCCEECCHHHHH
NVESSKPVAKAKPAVQQVAKSKGTSAPAGGREITVEATAYTAHPSENGTYGGRVLTAMGH
HCCCCCCCHHCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECC
DLTANPNMKVIAVDPKVMPLGSKVWVEGYGEAIAGDTGGAIKGNRIDVLVGSDGSANSWG
CEECCCCEEEEEECCCEEECCCEEEEEECCCEECCCCCCCEECCEEEEEECCCCCCCCCC
RKSVKVKVIE
CCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]