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The map label for this gene is yciR [C]

Identifier: 77748668

GI number: 77748668

Start: 3169304

End: 3171670

Strand: Reverse

Name: yciR [C]

Synonym: XAC2711

Alternate gene names: 77748668

Gene position: 3171670-3169304 (Counterclockwise)

Preceding gene: 21243439

Following gene: 21243437

Centisome position: 61.28

GC content: 65.61

Gene sequence:

>2367_bases
ATGAGGTCGATGCGTCTGCATACCCGCATCGCGGCCTTGCTCGTGCTGGTCGTGCTTGCCACGCAGGCGCTGACATTCCT
TGCCGTGCAGGTGGCGACCGAGCGCAGCGTCAAGGCGCAGCTTGGCGAAGAGCTGGAGATCGGGCAGCGCGTCTGGCAAC
GCATCAACATGCGCCGCGACGAACAGCTGCTGCAGTCGGCGTCGGTGCTGGCCGACGATTTCGGGTTTCGTGCGGCCGTG
GCCAGTGGCGACGTGCCCACCATGCAATCGGCCCTGCGCAATCACGCCGCGCGCATGTCGGCGCAAACCGCGCTGTTGCT
GTCGCCCGATGGCGAATTCCTGACCGGCCTGGCCGACGTACCGCAGGCCGAACAATTGCGTGCGGTGCAGGCCTTGCTGC
AACAAGCGCAGCGCGATGGACGCGCGGTCGGTGTGGTGGCGCTGAATCAGCACATCGTGCGGTTGGCAGTGGTGCAGGTG
CTGGCGCCGAACCGGGTCGGCTGGATTGGGATCGGCAATGAATCCGGCGATGGCCTGGCGCAGGATTTCCGCACCACCAC
CGGGCTGGATGCGACCTTCTTCACCGATGGTCCACCGGTGCGCGTGCTGGCCTCCACCCTGGAGCCCTCGGCGCGCGCCC
AATTCGCGCAGCAACTGCCCCTGGCAGCGAAGGTGCAGGCTGCATCGATCCCGCTGACGCTGGACCAGTCGCGCTATCTG
GTCAGGCTGCAATCGATCCAGGGCGACAGCCAGGTGCGGGTGGCGTTGCAGGCATCGCTGGATCGTGCCATGGCGCCGTA
CCGCAGCCTCAAGCTGCGTATCCTGCTGCTGGCAGGCTTGGCCACGGTCGCGGCATTGGGCGTGGCGATTGTTCTTGCGC
GCAGCGTGAGCAAGCCGGTTGCCCAACTGGTCCAGGCCGCACGGCGCATTCAGCGCGGCGATTACCGCACCGCCGTGCAG
GTGCCGCCGGGCCGCGAGCTCGCCGAACTGGCCGACAGTTTCGGGCGCATGCAGCACCAGATCGCCAGCCGCGAACAGCA
CATCCTGCATCAGGCCCGCCACGACGCCTTGACCGGGTTGCCTAACCGCATCTGGTTGCTGGAGCGCCTGAAGGACGTGG
TGGATCAGACCGTCGCATCCGGTGGCACCGCCGCGGTGCTGATCCTGGATCTGGAACGCTTCAAGGAACTCAACGACAGC
CTGGGCCACGACTTCGCCGACCAGGTGCTGGTGGAAGCCGGGCGCCGGCTCGTCGATGTCGTGCAAGAGCCCAATCTGGT
GGGCCGGCTGGGGAGCGATGAATTCATGGTGGTGGTGGCGCAAGCGGATGCGGCCAGCGTGCAGCAGGATGCGCAGCGCC
TGCTGCTGCAGTTGCGCCGCCCGCTGGTGTTGCCGCAGGCGCGCATCCAGCTCGAAGCCAGCATCGGCATCGTCTTGATT
CCCGAGCACGGCGCCGATCCGGACACCTTGTTGCGCCGGGCCGACATCGCACGGCGGCAAGTCGGTACGACAGCCACCTT
CGGCGCCAGCGTCTACCGCATGGGCCAGGACGAACAGCATCTGCGGCGTTTGCGCCTCACCGGCGATCTGCGTCAGGCCA
TCGGCGCCAATGAACTCACCTTGCGCTTCCAGCCCAAGATCTGTCTGCGCACCGATCATGTCGAACAGGTCGAAGTGCTG
GTGCGCTGGCATCATCCGGTGCTCGGGCCGATCGGTCCGGACGAATTCATCCCGCTTGCCGAACACTCCGGCGTGATCCA
TCCGCTCACCCGCTTCGTGCTGGACCAAGCGCTGCGCTGCCAGGCGCAATGGCGCAAGCAGGGGCTGCAGCTGGGCATGG
CCATCAATCTGTCAGCACTGGATCTGTCCGATCCCGGTTTGCCCGACTTCGTGCGCGGCTGCCTGGAGCATCACGCCGTG
CCAGCGCAGTCGGTCACACTGGAATTGACCGAAAGCGCCTTGATGCGCGATGTCGAATTCGCGCTGCACATGCTGCATCA
GTTGCGCAGTGCCGGAGTGCGCCTGTCCATCGACGATTTCGGCACCGGCTATTCCTCGTTGGCACAACTCAAGCGCATGC
CGGTGGACGAATTGAAGATCGACAAGAGTTTCGTCATGCAGTTGGCCGACGGCACCGACGATGCCTTCATCGTCCGCAGC
ACGATCGATCTGGGGCATAACCTGGGGCTGAGCGTCATTGCCGAAGGCGTCGAAAACACCGCCGCCCTCGCGCTGCTGCG
CGGCTACGGCTGCGACATGGTGCAGGGCTATCTGTATTCGCCACCGCTGGAAGAAGCGCCGCTGGTGGCCTGGTGCATGC
GCCAACTCGGCATGACCACGCCAGCACATGCAGGTGTGCAGCGATGA

Upstream 100 bases:

>100_bases
TGCAGACCACCGGCGCCGCGCCGGCCGCGGCGCCACCGGATGCGCGCGTGCGCGCGCTGCAGGACAAGTTCCGTAACGCC
GACCCGAAGAAGCCGCGCCC

Downstream 100 bases:

>100_bases
GCGGGCATCTGCGTGTCGCGCTGCTTGCTGCTGCGGTGGCCGGGGTGTTCGCGCCGCTGCATGCCCTGGCCGGCGACGGG
CGCCTGCTCGCCACCGGCGG

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINMRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMSAQTALLLSPDGEFLTGLADVPQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQV
LAPNRVGWIGIGNESGDGLAQDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAAKVQAASIPLTLDQSRYL
VRLQSIQGDSQVRVALQASLDRAMAPYRSLKLRILLLAGLATVAALGVAIVLARSVSKPVAQLVQAARRIQRGDYRTAVQ
VPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLVDVVQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIVLI
PEHGADPDTLLRRADIARRQVGTTATFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVL
VRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRCQAQWRKQGLQLGMAINLSALDLSDPGLPDFVRGCLEHHAV
PAQSVTLELTESALMRDVEFALHMLHQLRSAGVRLSIDDFGTGYSSLAQLKRMPVDELKIDKSFVMQLADGTDDAFIVRS
TIDLGHNLGLSVIAEGVENTAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGMTTPAHAGVQR

Sequences:

>Translated_788_residues
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINMRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMSAQTALLLSPDGEFLTGLADVPQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQV
LAPNRVGWIGIGNESGDGLAQDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAAKVQAASIPLTLDQSRYL
VRLQSIQGDSQVRVALQASLDRAMAPYRSLKLRILLLAGLATVAALGVAIVLARSVSKPVAQLVQAARRIQRGDYRTAVQ
VPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLVDVVQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIVLI
PEHGADPDTLLRRADIARRQVGTTATFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVL
VRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRCQAQWRKQGLQLGMAINLSALDLSDPGLPDFVRGCLEHHAV
PAQSVTLELTESALMRDVEFALHMLHQLRSAGVRLSIDDFGTGYSSLAQLKRMPVDELKIDKSFVMQLADGTDDAFIVRS
TIDLGHNLGLSVIAEGVENTAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGMTTPAHAGVQR
>Mature_788_residues
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINMRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMSAQTALLLSPDGEFLTGLADVPQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQV
LAPNRVGWIGIGNESGDGLAQDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAAKVQAASIPLTLDQSRYL
VRLQSIQGDSQVRVALQASLDRAMAPYRSLKLRILLLAGLATVAALGVAIVLARSVSKPVAQLVQAARRIQRGDYRTAVQ
VPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLVDVVQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIVLI
PEHGADPDTLLRRADIARRQVGTTATFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVL
VRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRCQAQWRKQGLQLGMAINLSALDLSDPGLPDFVRGCLEHHAV
PAQSVTLELTESALMRDVEFALHMLHQLRSAGVRLSIDDFGTGYSSLAQLKRMPVDELKIDKSFVMQLADGTDDAFIVRS
TIDLGHNLGLSVIAEGVENTAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGMTTPAHAGVQR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=34.4262295081967, Blast_Score=262, Evalue=5e-71,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=33.4894613583138, Blast_Score=240, Evalue=3e-64,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=36.4372469635627, Blast_Score=147, Evalue=4e-36,
Organism=Escherichia coli, GI226510982, Length=446, Percent_Identity=28.6995515695067, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=32.7935222672065, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=33.203125, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1786507, Length=274, Percent_Identity=33.2116788321168, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI87081845, Length=246, Percent_Identity=35.3658536585366, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788502, Length=257, Percent_Identity=32.295719844358, Blast_Score=123, Evalue=6e-29,
Organism=Escherichia coli, GI1787055, Length=251, Percent_Identity=33.4661354581673, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=32.5, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI87082096, Length=251, Percent_Identity=33.4661354581673, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=33.7662337662338, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1788381, Length=412, Percent_Identity=24.2718446601942, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788956, Length=218, Percent_Identity=28.8990825688073, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=31.6455696202532, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=28.6549707602339, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87082007, Length=136, Percent_Identity=30.8823529411765, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1787410, Length=171, Percent_Identity=28.6549707602339, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=27.6729559748428, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86167; Mature: 86167

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINMRRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHH
EQLLQSASVLADDFGFRAAVASGDVPTMQSALRNHAARMSAQTALLLSPDGEFLTGLADV
HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHCC
PQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQVLAPNRVGWIGIGNESGDGLA
CCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
QDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAAKVQAASIPLTLDQSRYL
HHHHHHCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHCCCHHEEECCCCCEEECCCHHE
VRLQSIQGDSQVRVALQASLDRAMAPYRSLKLRILLLAGLATVAALGVAIVLARSVSKPV
EEECCCCCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLVQAARRIQRGDYRTAVQVPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGL
HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDSLGHDFADQVLVEAGRRLVDV
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIVLI
HHCCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCEEEE
PEHGADPDTLLRRADIARRQVGTTATFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELT
ECCCCCHHHHHHHHHHHHHHCCCCHHHCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEE
LRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRC
EEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHH
QAQWRKQGLQLGMAINLSALDLSDPGLPDFVRGCLEHHAVPAQSVTLELTESALMRDVEF
HHHHHHCCHHCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHH
ALHMLHQLRSAGVRLSIDDFGTGYSSLAQLKRMPVDELKIDKSFVMQLADGTDDAFIVRS
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCCEEEEEE
TIDLGHNLGLSVIAEGVENTAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGMTT
EHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
PAHAGVQR
CCCCCCCC
>Mature Secondary Structure
MRSMRLHTRIAALLVLVVLATQALTFLAVQVATERSVKAQLGEELEIGQRVWQRINMRRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHH
EQLLQSASVLADDFGFRAAVASGDVPTMQSALRNHAARMSAQTALLLSPDGEFLTGLADV
HHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHCC
PQAEQLRAVQALLQQAQRDGRAVGVVALNQHIVRLAVVQVLAPNRVGWIGIGNESGDGLA
CCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
QDFRTTTGLDATFFTDGPPVRVLASTLEPSARAQFAQQLPLAAKVQAASIPLTLDQSRYL
HHHHHHCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHCCCHHEEECCCCCEEECCCHHE
VRLQSIQGDSQVRVALQASLDRAMAPYRSLKLRILLLAGLATVAALGVAIVLARSVSKPV
EEECCCCCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLVQAARRIQRGDYRTAVQVPPGRELAELADSFGRMQHQIASREQHILHQARHDALTGL
HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PNRIWLLERLKDVVDQTVASGGTAAVLILDLERFKELNDSLGHDFADQVLVEAGRRLVDV
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VQEPNLVGRLGSDEFMVVVAQADAASVQQDAQRLLLQLRRPLVLPQARIQLEASIGIVLI
HHCCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCEEEE
PEHGADPDTLLRRADIARRQVGTTATFGASVYRMGQDEQHLRRLRLTGDLRQAIGANELT
ECCCCCHHHHHHHHHHHHHHCCCCHHHCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEE
LRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDQALRC
EEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHH
QAQWRKQGLQLGMAINLSALDLSDPGLPDFVRGCLEHHAVPAQSVTLELTESALMRDVEF
HHHHHHCCHHCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHH
ALHMLHQLRSAGVRLSIDDFGTGYSSLAQLKRMPVDELKIDKSFVMQLADGTDDAFIVRS
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCCEEEEEE
TIDLGHNLGLSVIAEGVENTAALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGMTT
EHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
PAHAGVQR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]