| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yddG [H]
Identifier: 77748639
GI number: 77748639
Start: 2610900
End: 2611811
Strand: Reverse
Name: yddG [H]
Synonym: XAC2227
Alternate gene names: 77748639
Gene position: 2611811-2610900 (Counterclockwise)
Preceding gene: 21242963
Following gene: 21242950
Centisome position: 50.46
GC content: 61.07
Gene sequence:
>912_bases GTGACTAGAAAGAATGCCACCCTGATTGGTCTGATGGCCGTGCTACTGTGGAGCGCTGTCGTCGGCCTGATCCGCAGTGT AAGCCAACACCTTGGCGCGACCGGCGGAGCCGCCATGATCTACAGCGTGGCGGCTGTGCTGATGTGGTGCACCATCGGAC CAACCCGAATCAGCACGCTTCCGCGGCGTTACCTGCTCTGGGGCGGCGTGCTGTTCGTCGCCTACGAGCTGTGCCTGGCC TTGTCAATCGGCTACGCCAATACTGGCCGGCAGGCCATCGAGGTAGGCATGGTCAACTATTTGTGGCCTGCGCTGACGTT AGTCTTTGCCATCCTTTTCAACAGGCAGAAGGCGACCTGGCTGATCATTCCTGGGTTCGCTGTCGCCATCACCGGCATCT GTTGGGTGCTCGGCGGCAACCAGGGGCTGGATCTCGTGGGAATGCTCGGGAACGTCCAGGCCAACCCCTTCAGCTATGGG CTGGCCTTGGCAGGCGCACTGATCTGGGCCGGCTATTGCACCGTCACTGTTCGGATCGCCGAAGGCAAGAATGCCGTCAC GCTGTTCTTCATGCTCACGGCACTGACCCTGTGGCTCAAGTTCCTGCTCATAGGCGGGGAGACCATGACGTTCAGCTCGC AGGCAATCATCTACCTGGTGCTTGCGGCAGCCGCGATGGGTTTCGGGTATGCCGCATGGAACGTGGGCATCCTGCGAGGA AACCTGACGATTCTGGTGGGCGCATCCTACTTCATCCCGGTGTTTTCGGCAGCGTTGGCCGCACTGGTGTTGCGCACGCC GTTGCCGCTGACCTTTTGGCAAGGTGCGACAATGGTCTGCGCTGGCTCGATCCTGTGCTGGCTCGCAACGCGCAGCCCAA GTGCTGCACGTACGATTGACGCTGCGGCATAG
Upstream 100 bases:
>100_bases GAGATCACGCACCACCAAGCCTGCGACGAGTTGTACGAGGTCATTCTCTCTCTGGTACAGCGCAGCAAGCGGCCATCAAA ACCTAGCTGAGTTGATTGCA
Downstream 100 bases:
>100_bases TGCGCGACGCTACTTCGGTGACCTCTATGATGTGTTCCGAGTTGCTGTGACCTTCCGAAATCCCTCGATCGCGGGCAATA CAAGTACCTTTTGCGAGATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MTRKNATLIGLMAVLLWSAVVGLIRSVSQHLGATGGAAMIYSVAAVLMWCTIGPTRISTLPRRYLLWGGVLFVAYELCLA LSIGYANTGRQAIEVGMVNYLWPALTLVFAILFNRQKATWLIIPGFAVAITGICWVLGGNQGLDLVGMLGNVQANPFSYG LALAGALIWAGYCTVTVRIAEGKNAVTLFFMLTALTLWLKFLLIGGETMTFSSQAIIYLVLAAAAMGFGYAAWNVGILRG NLTILVGASYFIPVFSAALAALVLRTPLPLTFWQGATMVCAGSILCWLATRSPSAARTIDAAA
Sequences:
>Translated_303_residues MTRKNATLIGLMAVLLWSAVVGLIRSVSQHLGATGGAAMIYSVAAVLMWCTIGPTRISTLPRRYLLWGGVLFVAYELCLA LSIGYANTGRQAIEVGMVNYLWPALTLVFAILFNRQKATWLIIPGFAVAITGICWVLGGNQGLDLVGMLGNVQANPFSYG LALAGALIWAGYCTVTVRIAEGKNAVTLFFMLTALTLWLKFLLIGGETMTFSSQAIIYLVLAAAAMGFGYAAWNVGILRG NLTILVGASYFIPVFSAALAALVLRTPLPLTFWQGATMVCAGSILCWLATRSPSAARTIDAAA >Mature_302_residues TRKNATLIGLMAVLLWSAVVGLIRSVSQHLGATGGAAMIYSVAAVLMWCTIGPTRISTLPRRYLLWGGVLFVAYELCLAL SIGYANTGRQAIEVGMVNYLWPALTLVFAILFNRQKATWLIIPGFAVAITGICWVLGGNQGLDLVGMLGNVQANPFSYGL ALAGALIWAGYCTVTVRIAEGKNAVTLFFMLTALTLWLKFLLIGGETMTFSSQAIIYLVLAAAAMGFGYAAWNVGILRGN LTILVGASYFIPVFSAALAALVLRTPLPLTFWQGATMVCAGSILCWLATRSPSAARTIDAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DUF6 domain [H]
Homologues:
Organism=Escherichia coli, GI145693132, Length=291, Percent_Identity=58.0756013745705, Blast_Score=340, Evalue=9e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32198; Mature: 32067
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKNATLIGLMAVLLWSAVVGLIRSVSQHLGATGGAAMIYSVAAVLMWCTIGPTRISTL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHH PRRYLLWGGVLFVAYELCLALSIGYANTGRQAIEVGMVNYLWPALTLVFAILFNRQKATW HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE LIIPGFAVAITGICWVLGGNQGLDLVGMLGNVQANPFSYGLALAGALIWAGYCTVTVRIA EEECCHHHHHHHHHHEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCEEEEEEEEE EGKNAVTLFFMLTALTLWLKFLLIGGETMTFSSQAIIYLVLAAAAMGFGYAAWNVGILRG CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCHHHHEEEEEEC NLTILVGASYFIPVFSAALAALVLRTPLPLTFWQGATMVCAGSILCWLATRSPSAARTID CEEEEEECHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHEEEECCCCCHHCCCC AAA CCC >Mature Secondary Structure TRKNATLIGLMAVLLWSAVVGLIRSVSQHLGATGGAAMIYSVAAVLMWCTIGPTRISTL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHH PRRYLLWGGVLFVAYELCLALSIGYANTGRQAIEVGMVNYLWPALTLVFAILFNRQKATW HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE LIIPGFAVAITGICWVLGGNQGLDLVGMLGNVQANPFSYGLALAGALIWAGYCTVTVRIA EEECCHHHHHHHHHHEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCEEEEEEEEE EGKNAVTLFFMLTALTLWLKFLLIGGETMTFSSQAIIYLVLAAAAMGFGYAAWNVGILRG CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCHHHHEEEEEEC NLTILVGASYFIPVFSAALAALVLRTPLPLTFWQGATMVCAGSILCWLATRSPSAARTID CEEEEEECHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHEEEECCCCCHHCCCC AAA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 1834669; 7567469 [H]