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The map label for this gene is srfJ

Identifier: 77748565

GI number: 77748565

Start: 1337952

End: 1339271

Strand: Direct

Name: srfJ

Synonym: XAC1176

Alternate gene names: NA

Gene position: 1337952-1339271 (Clockwise)

Preceding gene: 21241929

Following gene: 21241935

Centisome position: 25.85

GC content: 60.38

Gene sequence:

>1320_bases
ATGCGCGTCAGCACGGCTGCTGCTCCTGCCAACGGGCATCCGCTGACCGAAAAAGAAAACTCCATCTTCGTCAATCCGCA
ACGGCAATTTCAGGAACTGTTGGGCATCGGTGGCGCGATCACCGATTCCAGCGCAGAGACCTTTGCCAAGCTGCCCAAGC
GTGCGCAACGTGCGCTGCTCACGGCGTACTACGATCCGCAGCAGGGCATTGGCTACACGCTGGCGCGTACCACCATCCAT
AGCTCGGATTTCAGCAGCGGCAGCTACACCTACATCAAGGAGGGCGATGCGGCGCTGAAGAGTTTTTCGGTCAAGCACGA
TGCCAAGTACCGCATCCCGATGTTGCGCCAGGCGATTGCGGCGGCCGGCGGCAAGCTCACCACGTTTGCCAGCCCATGGA
GCGCGCCGGCCTTCATGAAAGACAGCAACAACATGCTCAAGGGCGGCAAGCTATTGCCCGAGTACGCGCAGGCCTGGGCA
AGCTACTACACGCGGTTTATCGCGGCATACGAAAAAGCGGGCATCCCGATCTGGGGCATCAGCCTGCAGAACGAGCCGAT
GGCGGTGCAGACCTGGGAGTCGATGCTGTTTCCGGCCGAGGAAGAGCGCGACTTCTTGAAGCATCATCTTGGGCCCACCA
TGGCCAGCGCCGGCTACGGCGAGCGCAAGATCATCGTGTGGGACCACAACCGCGACATGATGGTGCACCGCGCGCATGTG
ATCTTCGATGACCCGGAGGCGGCAAAATATGCATGGGGCATGGGCTTCCATTGGTATGAAACCTGGGCCGGATTCGAGCC
GATGGTGGAGAACGTGGCGGCAGTGGCGCAGGCGTACCCGGACAAGCACTTGCTGTTGACCGAAGCGGCGGTGGAAAAGT
TCGACCCGGCCAAATTGCAGTATTGGCCCAATGGCGAACGCTACGGCACGGCCATCATCAACGACCTCAATCATGGCGCA
GTGGGCTGGACGGACTGGAACATTCTGCTCGACCAGCATGGTGGGCCGAACCACGTGGGCAATTACTGCTTTGCGCCGGT
GCATGCCGATACGCGCACGGGCGAGGTGATCTATACGCCGAGCTATTGGTATATCGGCCACTTTTCCAAATTCATCCGGC
CGGGCGCACGGCGGGTCAGCTCAGCCAGCAGCCGTAGCAATCTGGCGACCACGGCGTTCCTCAACACCGATGGCAGCCTG
GCCATGGTGGTCATGAATGCCGGCGACGTTGCGATTGCTTACAACCTGTATGTGGGCGAGGCATCCAGTACGTTGGAGAT
TCCGGCGCATGCGATCCAGACCGTGGTATTGGCGCAGTAA

Upstream 100 bases:

>100_bases
ATTCGCAGCGACGCCAACAGCGGTAGATGAGACCTCGCCAGCGGTGAGCAGCACTGGTGCACTGCGCGTCTACACCAGTT
CTCAAGGTGCCACGCAGCAG

Downstream 100 bases:

>100_bases
GCGACCTGCCGCAATTGGTCGAGCTGCGATCTGGCGCAGCCGCATCCGTCTAGCGTGCTCCTTCTGCCGAGTGGAGAAGG
AGTTTGCTGCGATAACAACC

Product: glycosyl hydrolase

Products: NA

Alternate protein names: Glucan Endo-1 6-Beta-Glucosidase; Glycoside Hydrolase Family; O-Glycosyl Hydrolase Family; Glycoside Hydrolase Family Protein; O-Glycosyl Hydrolase; Glycosyl Hydrolase; Ricin B Lectin; O-Glycosyl Hydrolase Family Protein; Glucuronoarabinoxylan Endo-1 4-Beta-Xylanase; Glycoside Hydrolase; Lysosomal Glucosyl Ceramidase-Like Protein; LPXTG-Motif Cell Wall Anchor Domain Protein; Glucan EndO-1 6-Beta-Glucosidase; Glycosy Hydrolase Family Protein; Beta-Glycosidase; Helix-Turn-Helix AraC Type; Glycosyl Hydrolase Family; Glycosyl Hydrolases Family; Endo-1 6-Beta-D-Glucanase

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MRVSTAAAPANGHPLTEKENSIFVNPQRQFQELLGIGGAITDSSAETFAKLPKRAQRALLTAYYDPQQGIGYTLARTTIH
SSDFSSGSYTYIKEGDAALKSFSVKHDAKYRIPMLRQAIAAAGGKLTTFASPWSAPAFMKDSNNMLKGGKLLPEYAQAWA
SYYTRFIAAYEKAGIPIWGISLQNEPMAVQTWESMLFPAEEERDFLKHHLGPTMASAGYGERKIIVWDHNRDMMVHRAHV
IFDDPEAAKYAWGMGFHWYETWAGFEPMVENVAAVAQAYPDKHLLLTEAAVEKFDPAKLQYWPNGERYGTAIINDLNHGA
VGWTDWNILLDQHGGPNHVGNYCFAPVHADTRTGEVIYTPSYWYIGHFSKFIRPGARRVSSASSRSNLATTAFLNTDGSL
AMVVMNAGDVAIAYNLYVGEASSTLEIPAHAIQTVVLAQ

Sequences:

>Translated_439_residues
MRVSTAAAPANGHPLTEKENSIFVNPQRQFQELLGIGGAITDSSAETFAKLPKRAQRALLTAYYDPQQGIGYTLARTTIH
SSDFSSGSYTYIKEGDAALKSFSVKHDAKYRIPMLRQAIAAAGGKLTTFASPWSAPAFMKDSNNMLKGGKLLPEYAQAWA
SYYTRFIAAYEKAGIPIWGISLQNEPMAVQTWESMLFPAEEERDFLKHHLGPTMASAGYGERKIIVWDHNRDMMVHRAHV
IFDDPEAAKYAWGMGFHWYETWAGFEPMVENVAAVAQAYPDKHLLLTEAAVEKFDPAKLQYWPNGERYGTAIINDLNHGA
VGWTDWNILLDQHGGPNHVGNYCFAPVHADTRTGEVIYTPSYWYIGHFSKFIRPGARRVSSASSRSNLATTAFLNTDGSL
AMVVMNAGDVAIAYNLYVGEASSTLEIPAHAIQTVVLAQ
>Mature_439_residues
MRVSTAAAPANGHPLTEKENSIFVNPQRQFQELLGIGGAITDSSAETFAKLPKRAQRALLTAYYDPQQGIGYTLARTTIH
SSDFSSGSYTYIKEGDAALKSFSVKHDAKYRIPMLRQAIAAAGGKLTTFASPWSAPAFMKDSNNMLKGGKLLPEYAQAWA
SYYTRFIAAYEKAGIPIWGISLQNEPMAVQTWESMLFPAEEERDFLKHHLGPTMASAGYGERKIIVWDHNRDMMVHRAHV
IFDDPEAAKYAWGMGFHWYETWAGFEPMVENVAAVAQAYPDKHLLLTEAAVEKFDPAKLQYWPNGERYGTAIINDLNHGA
VGWTDWNILLDQHGGPNHVGNYCFAPVHADTRTGEVIYTPSYWYIGHFSKFIRPGARRVSSASSRSNLATTAFLNTDGSL
AMVVMNAGDVAIAYNLYVGEASSTLEIPAHAIQTVVLAQ

Specific function: Unknown

COG id: COG5520

COG function: function code M; O-Glycosyl hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI54607043, Length=397, Percent_Identity=34.2569269521411, Blast_Score=246, Evalue=2e-65,
Organism=Homo sapiens, GI54607045, Length=397, Percent_Identity=34.2569269521411, Blast_Score=246, Evalue=2e-65,
Organism=Homo sapiens, GI54607047, Length=397, Percent_Identity=34.2569269521411, Blast_Score=246, Evalue=2e-65,
Organism=Homo sapiens, GI284807150, Length=397, Percent_Identity=34.2569269521411, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI284807152, Length=352, Percent_Identity=34.0909090909091, Blast_Score=217, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI17542884, Length=438, Percent_Identity=33.5616438356164, Blast_Score=259, Evalue=1e-69,
Organism=Caenorhabditis elegans, GI17539758, Length=432, Percent_Identity=34.7222222222222, Blast_Score=238, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI17539756, Length=433, Percent_Identity=35.1039260969977, Blast_Score=238, Evalue=4e-63,
Organism=Caenorhabditis elegans, GI25151335, Length=361, Percent_Identity=36.8421052631579, Blast_Score=221, Evalue=7e-58,
Organism=Caenorhabditis elegans, GI115532470, Length=436, Percent_Identity=31.1926605504587, Blast_Score=211, Evalue=8e-55,
Organism=Caenorhabditis elegans, GI115532472, Length=436, Percent_Identity=31.1926605504587, Blast_Score=210, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI193204210, Length=420, Percent_Identity=31.4285714285714, Blast_Score=198, Evalue=4e-51,
Organism=Drosophila melanogaster, GI21355305, Length=435, Percent_Identity=29.1954022988506, Blast_Score=176, Evalue=3e-44,
Organism=Drosophila melanogaster, GI161078544, Length=454, Percent_Identity=28.8546255506608, Blast_Score=172, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48542; Mature: 48542

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVSTAAAPANGHPLTEKENSIFVNPQRQFQELLGIGGAITDSSAETFAKLPKRAQRALL
CCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
TAYYDPQQGIGYTLARTTIHSSDFSSGSYTYIKEGDAALKSFSVKHDAKYRIPMLRQAIA
HEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHH
AAGGKLTTFASPWSAPAFMKDSNNMLKGGKLLPEYAQAWASYYTRFIAAYEKAGIPIWGI
HCCCCEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
SLQNEPMAVQTWESMLFPAEEERDFLKHHLGPTMASAGYGERKIIVWDHNRDMMVHRAHV
EECCCCCEEEEHHHHCCCCHHHHHHHHHHCCCHHHCCCCCCEEEEEEECCCCEEEEEEEE
IFDDPEAAKYAWGMGFHWYETWAGFEPMVENVAAVAQAYPDKHLLLTEAAVEKFDPAKLQ
EECCCCHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCEEE
YWPNGERYGTAIINDLNHGAVGWTDWNILLDQHGGPNHVGNYCFAPVHADTRTGEVIYTP
ECCCCCCCCHHEEECCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEECC
SYWYIGHFSKFIRPGARRVSSASSRSNLATTAFLNTDGSLAMVVMNAGDVAIAYNLYVGE
CEEEHHHHHHHHCHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECC
ASSTLEIPAHAIQTVVLAQ
CCCEEECCHHHHHEEEECC
>Mature Secondary Structure
MRVSTAAAPANGHPLTEKENSIFVNPQRQFQELLGIGGAITDSSAETFAKLPKRAQRALL
CCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
TAYYDPQQGIGYTLARTTIHSSDFSSGSYTYIKEGDAALKSFSVKHDAKYRIPMLRQAIA
HEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHH
AAGGKLTTFASPWSAPAFMKDSNNMLKGGKLLPEYAQAWASYYTRFIAAYEKAGIPIWGI
HCCCCEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
SLQNEPMAVQTWESMLFPAEEERDFLKHHLGPTMASAGYGERKIIVWDHNRDMMVHRAHV
EECCCCCEEEEHHHHCCCCHHHHHHHHHHCCCHHHCCCCCCEEEEEEECCCCEEEEEEEE
IFDDPEAAKYAWGMGFHWYETWAGFEPMVENVAAVAQAYPDKHLLLTEAAVEKFDPAKLQ
EECCCCHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCEEE
YWPNGERYGTAIINDLNHGAVGWTDWNILLDQHGGPNHVGNYCFAPVHADTRTGEVIYTP
ECCCCCCCCHHEEECCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEECC
SYWYIGHFSKFIRPGARRVSSASSRSNLATTAFLNTDGSLAMVVMNAGDVAIAYNLYVGE
CEEEHHHHHHHHCHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECC
ASSTLEIPAHAIQTVVLAQ
CCCEEECCHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA