| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is plsB [H]
Identifier: 21244987
GI number: 21244987
Start: 5038016
End: 5040673
Strand: Reverse
Name: plsB [H]
Synonym: XAC4270
Alternate gene names: 21244987
Gene position: 5040673-5038016 (Counterclockwise)
Preceding gene: 77748772
Following gene: 21244986
Centisome position: 97.39
GC content: 66.29
Gene sequence:
>2658_bases ATGCCAGAACAGAATCCCCTGCCGTTCCCGGACGGCCAGCCCAGCCCGCCCAGCACTGCCGCAGCCGACACCGGCGCCAC GGCGGCGGCATTGCCGCTCGCCGAGCCGGTACCGCCAGCGGTTGCGCCATCGATCGCCCCCAGCGTTGCCGCTGCGCGCA GCGGCAAGCGCCCCTGGTGGGCGCGCCTGCTTGGCCGCCTGGCAGACCCCTGGCTGAGCCTGACCATCGAGCCGGACCAG CCCGGTCGCTACGACGACGGCCGCCCGGTGGTGTACGTGCTGGAAGACTACGGCATGTCCAACGCGCTGATTTTGGACAA GGCCTGTCGCGAAGTCGGCCTGCCGTCGCCGCTGGTGCCGTTGCCGGGCGACCCGCTGGAGCGCAAGCGCGCCTACCTGG CGCTCTCACGGCGCAGCAGCAGCAATTCGCTGATTCCCGAGCAGCGCGGCGGCAAGACCCATTCCGATTCGCTGGCCAAG CTGCTGCAGGCGCACCGCGTGCGCGCCGACCTGGACGTGCATCTGGTGCCGGTGTCGATCTTCGTCGGCCGCGCGCCGGA CAAGCAGAGCGGCTGGTTTGCGGTGCTGTTCTCGGAAAACTGGGCGCTGGTCGGCCGCTTCCGCCGCCTGCTGTCGGTCT TGCTCAACGGCCGCACCACCATCGTGCGCTTCGCTCCGCCGATTTCGTTGCGCCAGACCATGGCCGAAGGGCTGCCGCCC GAGCGCACCTTGCGCAAGTTGCAGCGCGTGCTGCGCACGCACTTCCGGCGCATCCGCGAAGCGGTGATCGGCCCGGATTT GTCTACCCGCCGTTTGCTGGTGGACCAGGTGCTGGCCGCCGAGTCGGTACGCGAAGCCATCGCCATCCAGGCCAAGCGCG ACAATTCCAAGCCGGTCGATGCCTGGCGCAAGGCGCATGCCTATGCGTGGGAAATCGCCGCCGACTATTCCAGCCCGGTG GTGCGCTCGGCCAGCTTCCTGCTGACCCACGTGTGGAACCGCATCTACGCCGGCGTGCTGGTACATCACCTGGACAAGCT CAAACAGGCCGCGCCCGGGCACGAAGTGGTGTACGTGCCCAGCCACCGCAGCCACATGGACTACCTGCTGCTGAGCTACC TGCTGTACGAACGCGGCATCGTGCCGCCGCACATCGTGGCCGGCATCAACCTCAATCTGCCGGTGGTCGGTACCCTGCTG CGCAAGGGCGGCGCGTTCTTCATCCGCCGCTCGATCAAGGGCAATGCGCTGTATTCGGCGGTGCTGAGCGAATACGTCGC CCAACTGGTGGCCGGCGGCTATTCGATCGAATACTTCGTCGAAGGCGGGCGTTCGCGCACCGGGCGTTTGCTGCAGCCCA AGGGCGGCATGATCGCGATGACCCTGCGCGCGTATCTGCGCCAGCCGCGCAAGCCGGTGCTGTTCCAGCCGGTGTACATC GGCTACGAGAAATTGATGGAAGGCAACAGCTACCTGGACGAGCTCACCGGCCGGCCCAAGGAGAAGGAATCCATCTGGGG CCTGCTGTGGTCCATCCCCAAGGTGCTCAAGCAGAACTATGGCCAGGTGGTGGTGAACTTCGGCGAGCCGATCGCGCTCA ACGACGTGCTGGCCAAGCACGCGCCCGATTGGGACGGCCAGCCGCTGCCGGAAGACGAAAAACCCACCTGGCTGGCGCCC GCGGTCGACATGCTGTCGACGCAGATCCAGACCCGCATCAACTGCGCCGCCGACGTCAATCCGATCAACCTGCTGGCGCT GGCCCTGCTGTCCACGCCCAAGCACGCGATGGGCGAGGCCGATCTGATCGCGCAGATCGAGCTGTGCAAGAAGCTGCTGG CCGAAATGCCCTACTCGGACCGCGTCACCGTCACCCCGCATACGCCGGCGCGCATCATCACCCATGCCGAAGAGATCAAC GTGCTCACGCGTGTGTCGCACCCGCTGGGCGATGTGCTCAGCGTCAGCGGCGATACGGCGGTGCTGCTGAGCTACTTCCG CAACAACGTGCTGCACCTGTTCACTGCCTCCTCGTGGGTGGCGTGCTGTTTCCAGAACAACCGCCGCATGAGCCGCGCCG GTCTGTTGCGCCTGGGTCGCACGGTGTATCCGTTTCTGCAGGCCGAGTTGTTCCTGCCGTGGAGCGAAGACCGCTTTGCC GAACGCATCGAACAGACCATCGACATGTTCGTGCGCGAAGGCCTGCTGCTCAACGTCACCGACGACGACGGCGGGATCCT GGCACGCAACACCGGGCAGACCGACGAAGTGTTCCGCCTGCGTGCGATCGGCCACTCGCTGCAACAGGCCTTCGAGCGCT ATTACATCGCCATTTCGGTGCTGGTGAAGAACGGTCCCGGCGTGCTCGGTGCCGGCGAACTGGAAAGCCTGTGCCAACAG GCCGCGCAGCGTCTGAGCCTGCTGTACGCACCGGCCGCGCCGGAGTTCTTCGACAAGACGCTGTTCCGCGGCTTCATCCA GAAATTGCGCGAGTTGCGCCTGGTGTGGCCGGACGAAAACAGCAAGCTGATGTTCGACGAGCGCCTGGATGCCTGGGCCA AGGACGCCAAGTTCATTCTCGGCCGCGAACTGCGCCATACCATCGAACGCGTCAGCCCGGCAGCGGCCAAGCCGGACGTG GTCGTGCCCCCGCAGTAA
Upstream 100 bases:
>100_bases CGCCCCTACCTAGCGCCACTGCAGCGCCCGACACCGCAGCGGCCGCGCCGGCGAAGCCTGCCGACACCGGGAACCGCCCG GCTGGGCGATAATGACCGTG
Downstream 100 bases:
>100_bases GCCGTCGGCGAACGCCTTCAAGCCCTGTGGGAGGCGTTGGGCGCGTGGCGGGGTGTGGGCGAGACGCCGGCCGCCTTCAC GCAGCGGTTCCGTTCGTTTC
Product: glycerol-3-phosphate acyltransferase
Products: NA
Alternate protein names: GPAT [H]
Number of amino acids: Translated: 885; Mature: 884
Protein sequence:
>885_residues MPEQNPLPFPDGQPSPPSTAAADTGATAAALPLAEPVPPAVAPSIAPSVAAARSGKRPWWARLLGRLADPWLSLTIEPDQ PGRYDDGRPVVYVLEDYGMSNALILDKACREVGLPSPLVPLPGDPLERKRAYLALSRRSSSNSLIPEQRGGKTHSDSLAK LLQAHRVRADLDVHLVPVSIFVGRAPDKQSGWFAVLFSENWALVGRFRRLLSVLLNGRTTIVRFAPPISLRQTMAEGLPP ERTLRKLQRVLRTHFRRIREAVIGPDLSTRRLLVDQVLAAESVREAIAIQAKRDNSKPVDAWRKAHAYAWEIAADYSSPV VRSASFLLTHVWNRIYAGVLVHHLDKLKQAAPGHEVVYVPSHRSHMDYLLLSYLLYERGIVPPHIVAGINLNLPVVGTLL RKGGAFFIRRSIKGNALYSAVLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMIAMTLRAYLRQPRKPVLFQPVYI GYEKLMEGNSYLDELTGRPKEKESIWGLLWSIPKVLKQNYGQVVVNFGEPIALNDVLAKHAPDWDGQPLPEDEKPTWLAP AVDMLSTQIQTRINCAADVNPINLLALALLSTPKHAMGEADLIAQIELCKKLLAEMPYSDRVTVTPHTPARIITHAEEIN VLTRVSHPLGDVLSVSGDTAVLLSYFRNNVLHLFTASSWVACCFQNNRRMSRAGLLRLGRTVYPFLQAELFLPWSEDRFA ERIEQTIDMFVREGLLLNVTDDDGGILARNTGQTDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGVLGAGELESLCQQ AAQRLSLLYAPAAPEFFDKTLFRGFIQKLRELRLVWPDENSKLMFDERLDAWAKDAKFILGRELRHTIERVSPAAAKPDV VVPPQ
Sequences:
>Translated_885_residues MPEQNPLPFPDGQPSPPSTAAADTGATAAALPLAEPVPPAVAPSIAPSVAAARSGKRPWWARLLGRLADPWLSLTIEPDQ PGRYDDGRPVVYVLEDYGMSNALILDKACREVGLPSPLVPLPGDPLERKRAYLALSRRSSSNSLIPEQRGGKTHSDSLAK LLQAHRVRADLDVHLVPVSIFVGRAPDKQSGWFAVLFSENWALVGRFRRLLSVLLNGRTTIVRFAPPISLRQTMAEGLPP ERTLRKLQRVLRTHFRRIREAVIGPDLSTRRLLVDQVLAAESVREAIAIQAKRDNSKPVDAWRKAHAYAWEIAADYSSPV VRSASFLLTHVWNRIYAGVLVHHLDKLKQAAPGHEVVYVPSHRSHMDYLLLSYLLYERGIVPPHIVAGINLNLPVVGTLL RKGGAFFIRRSIKGNALYSAVLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMIAMTLRAYLRQPRKPVLFQPVYI GYEKLMEGNSYLDELTGRPKEKESIWGLLWSIPKVLKQNYGQVVVNFGEPIALNDVLAKHAPDWDGQPLPEDEKPTWLAP AVDMLSTQIQTRINCAADVNPINLLALALLSTPKHAMGEADLIAQIELCKKLLAEMPYSDRVTVTPHTPARIITHAEEIN VLTRVSHPLGDVLSVSGDTAVLLSYFRNNVLHLFTASSWVACCFQNNRRMSRAGLLRLGRTVYPFLQAELFLPWSEDRFA ERIEQTIDMFVREGLLLNVTDDDGGILARNTGQTDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGVLGAGELESLCQQ AAQRLSLLYAPAAPEFFDKTLFRGFIQKLRELRLVWPDENSKLMFDERLDAWAKDAKFILGRELRHTIERVSPAAAKPDV VVPPQ >Mature_884_residues PEQNPLPFPDGQPSPPSTAAADTGATAAALPLAEPVPPAVAPSIAPSVAAARSGKRPWWARLLGRLADPWLSLTIEPDQP GRYDDGRPVVYVLEDYGMSNALILDKACREVGLPSPLVPLPGDPLERKRAYLALSRRSSSNSLIPEQRGGKTHSDSLAKL LQAHRVRADLDVHLVPVSIFVGRAPDKQSGWFAVLFSENWALVGRFRRLLSVLLNGRTTIVRFAPPISLRQTMAEGLPPE RTLRKLQRVLRTHFRRIREAVIGPDLSTRRLLVDQVLAAESVREAIAIQAKRDNSKPVDAWRKAHAYAWEIAADYSSPVV RSASFLLTHVWNRIYAGVLVHHLDKLKQAAPGHEVVYVPSHRSHMDYLLLSYLLYERGIVPPHIVAGINLNLPVVGTLLR KGGAFFIRRSIKGNALYSAVLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMIAMTLRAYLRQPRKPVLFQPVYIG YEKLMEGNSYLDELTGRPKEKESIWGLLWSIPKVLKQNYGQVVVNFGEPIALNDVLAKHAPDWDGQPLPEDEKPTWLAPA VDMLSTQIQTRINCAADVNPINLLALALLSTPKHAMGEADLIAQIELCKKLLAEMPYSDRVTVTPHTPARIITHAEEINV LTRVSHPLGDVLSVSGDTAVLLSYFRNNVLHLFTASSWVACCFQNNRRMSRAGLLRLGRTVYPFLQAELFLPWSEDRFAE RIEQTIDMFVREGLLLNVTDDDGGILARNTGQTDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGVLGAGELESLCQQA AQRLSLLYAPAAPEFFDKTLFRGFIQKLRELRLVWPDENSKLMFDERLDAWAKDAKFILGRELRHTIERVSPAAAKPDVV VPPQ
Specific function: De novo phospholipid biosynthesis; first step. [C]
COG id: COG2937
COG function: function code I; Glycerol-3-phosphate O-acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GPAT/DAPAT family [H]
Homologues:
Organism=Homo sapiens, GI7657134, Length=469, Percent_Identity=31.1300639658849, Blast_Score=184, Evalue=3e-46, Organism=Homo sapiens, GI190358539, Length=565, Percent_Identity=24.2477876106195, Blast_Score=155, Evalue=2e-37, Organism=Escherichia coli, GI87082362, Length=781, Percent_Identity=37.9001280409731, Blast_Score=482, Evalue=1e-137, Organism=Caenorhabditis elegans, GI25147672, Length=263, Percent_Identity=34.2205323193916, Blast_Score=154, Evalue=2e-37, Organism=Caenorhabditis elegans, GI71988723, Length=316, Percent_Identity=32.9113924050633, Blast_Score=148, Evalue=1e-35, Organism=Caenorhabditis elegans, GI71988728, Length=191, Percent_Identity=39.7905759162304, Blast_Score=133, Evalue=4e-31, Organism=Drosophila melanogaster, GI17864692, Length=270, Percent_Identity=34.0740740740741, Blast_Score=159, Evalue=7e-39, Organism=Drosophila melanogaster, GI24650754, Length=252, Percent_Identity=34.5238095238095, Blast_Score=150, Evalue=3e-36, Organism=Drosophila melanogaster, GI24650752, Length=252, Percent_Identity=34.5238095238095, Blast_Score=150, Evalue=3e-36, Organism=Drosophila melanogaster, GI21357731, Length=252, Percent_Identity=34.5238095238095, Blast_Score=150, Evalue=3e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002123 - InterPro: IPR022284 [H]
Pfam domain/function: PF01553 Acyltransferase [H]
EC number: =2.3.1.15 [H]
Molecular weight: Translated: 98469; Mature: 98338
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEQNPLPFPDGQPSPPSTAAADTGATAAALPLAEPVPPAVAPSIAPSVAAARSGKRPWW CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHH ARLLGRLADPWLSLTIEPDQPGRYDDGRPVVYVLEDYGMSNALILDKACREVGLPSPLVP HHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC LPGDPLERKRAYLALSRRSSSNSLIPEQRGGKTHSDSLAKLLQAHRVRADLDVHLVPVSI CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE FVGRAPDKQSGWFAVLFSENWALVGRFRRLLSVLLNGRTTIVRFAPPISLRQTMAEGLPP EEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCH ERTLRKLQRVLRTHFRRIREAVIGPDLSTRRLLVDQVLAAESVREAIAIQAKRDNSKPVD HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHH AWRKAHAYAWEIAADYSSPVVRSASFLLTHVWNRIYAGVLVHHLDKLKQAAPGHEVVYVP HHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC SHRSHMDYLLLSYLLYERGIVPPHIVAGINLNLPVVGTLLRKGGAFFIRRSIKGNALYSA CCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHH VLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMIAMTLRAYLRQPRKPVLFQPVYI HHHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCCEEHHHHHHHHHCCCCCEEECHHHH GYEKLMEGNSYLDELTGRPKEKESIWGLLWSIPKVLKQNYGQVVVNFGEPIALNDVLAKH HHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHC APDWDGQPLPEDEKPTWLAPAVDMLSTQIQTRINCAADVNPINLLALALLSTPKHAMGEA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCH DLIAQIELCKKLLAEMPYSDRVTVTPHTPARIITHAEEINVLTRVSHPLGDVLSVSGDTA HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHH VLLSYFRNNVLHLFTASSWVACCFQNNRRMSRAGLLRLGRTVYPFLQAELFLPWSEDRFA HHHHHHHCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHH ERIEQTIDMFVREGLLLNVTDDDGGILARNTGQTDEVFRLRAIGHSLQQAFERYYIAISV HHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE LVKNGPGVLGAGELESLCQQAAQRLSLLYAPAAPEFFDKTLFRGFIQKLRELRLVWPDEN EEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHCEEECCCCC SKLMFDERLDAWAKDAKFILGRELRHTIERVSPAAAKPDVVVPPQ CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC >Mature Secondary Structure PEQNPLPFPDGQPSPPSTAAADTGATAAALPLAEPVPPAVAPSIAPSVAAARSGKRPWW CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHH ARLLGRLADPWLSLTIEPDQPGRYDDGRPVVYVLEDYGMSNALILDKACREVGLPSPLVP HHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC LPGDPLERKRAYLALSRRSSSNSLIPEQRGGKTHSDSLAKLLQAHRVRADLDVHLVPVSI CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE FVGRAPDKQSGWFAVLFSENWALVGRFRRLLSVLLNGRTTIVRFAPPISLRQTMAEGLPP EEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCH ERTLRKLQRVLRTHFRRIREAVIGPDLSTRRLLVDQVLAAESVREAIAIQAKRDNSKPVD HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHH AWRKAHAYAWEIAADYSSPVVRSASFLLTHVWNRIYAGVLVHHLDKLKQAAPGHEVVYVP HHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC SHRSHMDYLLLSYLLYERGIVPPHIVAGINLNLPVVGTLLRKGGAFFIRRSIKGNALYSA CCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHH VLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMIAMTLRAYLRQPRKPVLFQPVYI HHHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCCEEHHHHHHHHHCCCCCEEECHHHH GYEKLMEGNSYLDELTGRPKEKESIWGLLWSIPKVLKQNYGQVVVNFGEPIALNDVLAKH HHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHC APDWDGQPLPEDEKPTWLAPAVDMLSTQIQTRINCAADVNPINLLALALLSTPKHAMGEA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHCCCH DLIAQIELCKKLLAEMPYSDRVTVTPHTPARIITHAEEINVLTRVSHPLGDVLSVSGDTA HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHH VLLSYFRNNVLHLFTASSWVACCFQNNRRMSRAGLLRLGRTVYPFLQAELFLPWSEDRFA HHHHHHHCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHH ERIEQTIDMFVREGLLLNVTDDDGGILARNTGQTDEVFRLRAIGHSLQQAFERYYIAISV HHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE LVKNGPGVLGAGELESLCQQAAQRLSLLYAPAAPEFFDKTLFRGFIQKLRELRLVWPDEN EEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHCEEECCCCC SKLMFDERLDAWAKDAKFILGRELRHTIERVSPAAAKPDVVVPPQ CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]