Click here to switch to the map view.

The map label for this gene is glyS [H]

Identifier: 21244927

GI number: 21244927

Start: 4959182

End: 4961419

Strand: Reverse

Name: glyS [H]

Synonym: XAC4210

Alternate gene names: 21244927

Gene position: 4961419-4959182 (Counterclockwise)

Preceding gene: 21244928

Following gene: 21244921

Centisome position: 95.86

GC content: 66.13

Gene sequence:

>2238_bases
ATGAGCGAACAACTTCCCCTGCTGATCGAACTGGGCACCGAAGAGCTGCCGGTCAAGGCGCTGCCGGGTCTGGCGCAGGC
CCTCTTCGATGGCGTGCTGAGCGGCCTGGAAAAGCGCGGCATTGCCGTCGCCCGTGGCGATGCCAAACCGCTGTCCACCC
CGCGTCGCCTGGCGGTGCTGCTGCCGGGCGTGGCCACCGAGCAGCCGGAGCAGCGCTCGGAAGTGCTGGGGCCGTATCTC
AACATCGCGCTGGATGCGCGAGGTCAGCCGACCAAGGCGCTGGCCGGTTTCGCCGCCAAGGCCGGCATCGACTGGACCGC
GCTGGAACGCACCAGCGACGCCAAGGGCGAGCGTTTCGTGCATCGCGCAGTGACGCCGGGCGCGCGCACGGCCGACTTGT
TGCCGGAGATCCTGCGCGAGGCCATCGCCGCGATGCCCATCCCCAAGCCGATGCGCTGGGGCGCGCACGAATACGCCTTC
GCGCGGCCGGTGCAGTGGCTGGTGCTGCTGTTCGGCACCGCGGTGATTCCGGCCGAGTTGCTGGGCGTGCGCGGCGACCG
CATCACGCGCGGGCACCGCTTCATGCATGAAGGCGCGGTGTCGCTGGCGGCGCCCGGCGACTACGTCGATGCGCTGCGTG
CGGCGCATGTGCTGGTGGATCCGGACGCGCGCCGTGCCCGCATCGTCGACGAAGTGCAGGCGGCGGCCCGGCAGGCCGGC
GGCAGCGCACGCATCGGCGACGACAACCTGGAGCAGGTGGTCAACCTGGTCGAATGGCCGGCGGCGGTGCTGTGCAGTTT
CGAACGCGACTTCCTGGCGGTGCCGCAGGAAGCATTGATCGAAACCATGGAGATCAACCAGAAATTCTTCCCGGTGCTGG
ATGACGGCGGCACCTTGACCGAGCAGTTTATCGGCATCGCCAATATCCAATCCAAGGACGTGGCCGAAGTCGCCAAAGGC
TACGAGCGGGTCATCCGTCCGCGCTTTGCCGACGCCAAGTTCTTCTTCGATGAAGACCTGAAGCAAGGCTTGGAGGCGAT
GGGCGCGGGGCTTGCCAGCGTGACCTACCAGGCCAAGCTGGGCACGGTGGCCGACAAGGTCGCACGCGTGGCGGCGCTGG
CCGAAATCATCGCCCCGCAGGTGGGCGCCGACCCGCTGCAGGCACGCCGCGCTGCAGCGTTGGCCAAGAACGACCTGCAA
TCGCGCATGGTCAACGAATTCCCGGAATTGCAGGGCATTGCCGGCCGCCATTACGCCAAGGCCGCCGGTGAACCCAGCGA
GATTGCGCTGGCCATCGACGAGGCCTACCAACCGCGTTTTGCCGGCGACGACATCGCGCTGTCGCCGCTGGGCAAGGTGC
TGGCGATTGCCGAACGCCTGGATACGTTGGCCGGTGGGTTTGCGGCCGGGTTGAAGCCGACCGGCAACAAGGATCCGTTT
GCGCTGCGGCGTAATGCGTTGGGGTTGGCGCGGACGGTGATTGAGAGTGGGTTTGATTTATCCCTAATTGATTTGCTGAA
GAAAGCCGTGAGTTTGGTTAATTCCGCTTTGGCTTCGTCGCAAGCTGGTAAACAACAAACAGCGGCTGAAGCTGCCAAGG
CGCAAGGTGTCAATGTCGCAGAGCGCCAGAGCGGCGGGCTATGGGTGCCAAATGTAGAAGCGACTTCGGAAGAAATCTTC
GACTTCATCCTCGACCGCTTACGCGGCTACTACGCCGACAAGGGCGTACCGGCCACGCATTTCAACGCAGTCGCCGCATT
GTTCTCGGTCACGTCCGAGGCCGTGCCGACACCGACCAGCGTAGGAGCGCACCCGGGCGCGACCCCCGGCTCCCTCTACG
ACTTCGACCGCCGCATCGATGCCATCGGCATCTTCGCCACGCTGCCCGAAGCCGATGCGCTGGCTGCGGCGAACAAGCGC
ATCCGCAATATCCTGCGCAAGGTCGAAGGGGAGATCCCCGGCGATATCGACACCAGCCTGCTGCGCGAGCCGGCCGAGGA
AGCGCTGGCCGAAGCGGTGGAAGCGGCCATCGGCGACACCGGCGATGCGCTCCACCGCCATGACTATGTCGCCGTGCTCG
CACGCCTGGCGCGCCTGCGCCCACAGGTGGATGCGTTCTTCGACGGCGTGATGGTCAATGCCGACGACCCGCAGCTGCGC
GCCAACCGGCTCGCATTGTTGAAGAAGCTCGGCGACCGCCTCGGCAGCGTCGCCGCCATCGAGCATCTGTCCAGCTGA

Upstream 100 bases:

>100_bases
TCCGGCGCTGCGCGCCACCTTCTCCCGCCAGCGGGAGAAGCACATCCTCCAGTCACCTTCGCCCGTTGACGGCAGAAGGA
ACAAGCAAGGTCCATCTGAC

Downstream 100 bases:

>100_bases
TGTCCAGCTCGGCGGGCGCGCTGCACTGGCAGGCCGCCCAGGCCGCGTTGGCGCGGCGCGATCTGGGCGAGGCAGCATCT
GCATTGCAGGCGCTGCTGAG

Product: glycyl-tRNA synthetase subunit beta

Products: NA

Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]

Number of amino acids: Translated: 745; Mature: 744

Protein sequence:

>745_residues
MSEQLPLLIELGTEELPVKALPGLAQALFDGVLSGLEKRGIAVARGDAKPLSTPRRLAVLLPGVATEQPEQRSEVLGPYL
NIALDARGQPTKALAGFAAKAGIDWTALERTSDAKGERFVHRAVTPGARTADLLPEILREAIAAMPIPKPMRWGAHEYAF
ARPVQWLVLLFGTAVIPAELLGVRGDRITRGHRFMHEGAVSLAAPGDYVDALRAAHVLVDPDARRARIVDEVQAAARQAG
GSARIGDDNLEQVVNLVEWPAAVLCSFERDFLAVPQEALIETMEINQKFFPVLDDGGTLTEQFIGIANIQSKDVAEVAKG
YERVIRPRFADAKFFFDEDLKQGLEAMGAGLASVTYQAKLGTVADKVARVAALAEIIAPQVGADPLQARRAAALAKNDLQ
SRMVNEFPELQGIAGRHYAKAAGEPSEIALAIDEAYQPRFAGDDIALSPLGKVLAIAERLDTLAGGFAAGLKPTGNKDPF
ALRRNALGLARTVIESGFDLSLIDLLKKAVSLVNSALASSQAGKQQTAAEAAKAQGVNVAERQSGGLWVPNVEATSEEIF
DFILDRLRGYYADKGVPATHFNAVAALFSVTSEAVPTPTSVGAHPGATPGSLYDFDRRIDAIGIFATLPEADALAAANKR
IRNILRKVEGEIPGDIDTSLLREPAEEALAEAVEAAIGDTGDALHRHDYVAVLARLARLRPQVDAFFDGVMVNADDPQLR
ANRLALLKKLGDRLGSVAAIEHLSS

Sequences:

>Translated_745_residues
MSEQLPLLIELGTEELPVKALPGLAQALFDGVLSGLEKRGIAVARGDAKPLSTPRRLAVLLPGVATEQPEQRSEVLGPYL
NIALDARGQPTKALAGFAAKAGIDWTALERTSDAKGERFVHRAVTPGARTADLLPEILREAIAAMPIPKPMRWGAHEYAF
ARPVQWLVLLFGTAVIPAELLGVRGDRITRGHRFMHEGAVSLAAPGDYVDALRAAHVLVDPDARRARIVDEVQAAARQAG
GSARIGDDNLEQVVNLVEWPAAVLCSFERDFLAVPQEALIETMEINQKFFPVLDDGGTLTEQFIGIANIQSKDVAEVAKG
YERVIRPRFADAKFFFDEDLKQGLEAMGAGLASVTYQAKLGTVADKVARVAALAEIIAPQVGADPLQARRAAALAKNDLQ
SRMVNEFPELQGIAGRHYAKAAGEPSEIALAIDEAYQPRFAGDDIALSPLGKVLAIAERLDTLAGGFAAGLKPTGNKDPF
ALRRNALGLARTVIESGFDLSLIDLLKKAVSLVNSALASSQAGKQQTAAEAAKAQGVNVAERQSGGLWVPNVEATSEEIF
DFILDRLRGYYADKGVPATHFNAVAALFSVTSEAVPTPTSVGAHPGATPGSLYDFDRRIDAIGIFATLPEADALAAANKR
IRNILRKVEGEIPGDIDTSLLREPAEEALAEAVEAAIGDTGDALHRHDYVAVLARLARLRPQVDAFFDGVMVNADDPQLR
ANRLALLKKLGDRLGSVAAIEHLSS
>Mature_744_residues
SEQLPLLIELGTEELPVKALPGLAQALFDGVLSGLEKRGIAVARGDAKPLSTPRRLAVLLPGVATEQPEQRSEVLGPYLN
IALDARGQPTKALAGFAAKAGIDWTALERTSDAKGERFVHRAVTPGARTADLLPEILREAIAAMPIPKPMRWGAHEYAFA
RPVQWLVLLFGTAVIPAELLGVRGDRITRGHRFMHEGAVSLAAPGDYVDALRAAHVLVDPDARRARIVDEVQAAARQAGG
SARIGDDNLEQVVNLVEWPAAVLCSFERDFLAVPQEALIETMEINQKFFPVLDDGGTLTEQFIGIANIQSKDVAEVAKGY
ERVIRPRFADAKFFFDEDLKQGLEAMGAGLASVTYQAKLGTVADKVARVAALAEIIAPQVGADPLQARRAAALAKNDLQS
RMVNEFPELQGIAGRHYAKAAGEPSEIALAIDEAYQPRFAGDDIALSPLGKVLAIAERLDTLAGGFAAGLKPTGNKDPFA
LRRNALGLARTVIESGFDLSLIDLLKKAVSLVNSALASSQAGKQQTAAEAAKAQGVNVAERQSGGLWVPNVEATSEEIFD
FILDRLRGYYADKGVPATHFNAVAALFSVTSEAVPTPTSVGAHPGATPGSLYDFDRRIDAIGIFATLPEADALAAANKRI
RNILRKVEGEIPGDIDTSLLREPAEEALAEAVEAAIGDTGDALHRHDYVAVLARLARLRPQVDAFFDGVMVNADDPQLRA
NRLALLKKLGDRLGSVAAIEHLSS

Specific function: Unknown

COG id: COG0751

COG function: function code J; Glycyl-tRNA synthetase, beta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Escherichia coli, GI1789982, Length=745, Percent_Identity=41.0738255033557, Blast_Score=503, Evalue=1e-143,

Paralogues:

None

Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008909
- InterPro:   IPR006194
- InterPro:   IPR015944
- InterPro:   IPR002311 [H]

Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]

EC number: =6.1.1.14 [H]

Molecular weight: Translated: 79464; Mature: 79333

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQLPLLIELGTEELPVKALPGLAQALFDGVLSGLEKRGIAVARGDAKPLSTPRRLAVL
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHE
LPGVATEQPEQRSEVLGPYLNIALDARGQPTKALAGFAAKAGIDWTALERTSDAKGERFV
ECCCCCCCCHHHHHHHCHHHEEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCHHHHH
HRAVTPGARTADLLPEILREAIAAMPIPKPMRWGAHEYAFARPVQWLVLLFGTAVIPAEL
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGVRGDRITRGHRFMHEGAVSLAAPGDYVDALRAAHVLVDPDARRARIVDEVQAAARQAG
HCCCCCCHHHHHHHHHHCCEEECCCCHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCC
GSARIGDDNLEQVVNLVEWPAAVLCSFERDFLAVPQEALIETMEINQKFFPVLDDGGTLT
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHCCHHCCEECCCCHHH
EQFIGIANIQSKDVAEVAKGYERVIRPRFADAKFFFDEDLKQGLEAMGAGLASVTYQAKL
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
GTVADKVARVAALAEIIAPQVGADPLQARRAAALAKNDLQSRMVNEFPELQGIAGRHYAK
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAGEPSEIALAIDEAYQPRFAGDDIALSPLGKVLAIAERLDTLAGGFAAGLKPTGNKDPF
CCCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
ALRRNALGLARTVIESGFDLSLIDLLKKAVSLVNSALASSQAGKQQTAAEAAKAQGVNVA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHH
ERQSGGLWVPNVEATSEEIFDFILDRLRGYYADKGVPATHFNAVAALFSVTSEAVPTPTS
HHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
VGAHPGATPGSLYDFDRRIDAIGIFATLPEADALAAANKRIRNILRKVEGEIPGDIDTSL
CCCCCCCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LREPAEEALAEAVEAAIGDTGDALHRHDYVAVLARLARLRPQVDAFFDGVMVNADDPQLR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEECCCCCHHH
ANRLALLKKLGDRLGSVAAIEHLSS
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEQLPLLIELGTEELPVKALPGLAQALFDGVLSGLEKRGIAVARGDAKPLSTPRRLAVL
CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHE
LPGVATEQPEQRSEVLGPYLNIALDARGQPTKALAGFAAKAGIDWTALERTSDAKGERFV
ECCCCCCCCHHHHHHHCHHHEEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCHHHHH
HRAVTPGARTADLLPEILREAIAAMPIPKPMRWGAHEYAFARPVQWLVLLFGTAVIPAEL
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGVRGDRITRGHRFMHEGAVSLAAPGDYVDALRAAHVLVDPDARRARIVDEVQAAARQAG
HCCCCCCHHHHHHHHHHCCEEECCCCHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCC
GSARIGDDNLEQVVNLVEWPAAVLCSFERDFLAVPQEALIETMEINQKFFPVLDDGGTLT
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHCCHHCCEECCCCHHH
EQFIGIANIQSKDVAEVAKGYERVIRPRFADAKFFFDEDLKQGLEAMGAGLASVTYQAKL
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
GTVADKVARVAALAEIIAPQVGADPLQARRAAALAKNDLQSRMVNEFPELQGIAGRHYAK
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAGEPSEIALAIDEAYQPRFAGDDIALSPLGKVLAIAERLDTLAGGFAAGLKPTGNKDPF
CCCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
ALRRNALGLARTVIESGFDLSLIDLLKKAVSLVNSALASSQAGKQQTAAEAAKAQGVNVA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHH
ERQSGGLWVPNVEATSEEIFDFILDRLRGYYADKGVPATHFNAVAALFSVTSEAVPTPTS
HHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
VGAHPGATPGSLYDFDRRIDAIGIFATLPEADALAAANKRIRNILRKVEGEIPGDIDTSL
CCCCCCCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LREPAEEALAEAVEAAIGDTGDALHRHDYVAVLARLARLRPQVDAFFDGVMVNADDPQLR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEECCCCCHHH
ANRLALLKKLGDRLGSVAAIEHLSS
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA