Click here to switch to the map view.

The map label for this gene is ecfR

Identifier: 21244845

GI number: 21244845

Start: 4849390

End: 4849929

Strand: Reverse

Name: ecfR

Synonym: XAC4128

Alternate gene names: NA

Gene position: 4849929-4849390 (Counterclockwise)

Preceding gene: 21244852

Following gene: 21244844

Centisome position: 93.71

GC content: 67.96

Gene sequence:

>540_bases
ATGTCCGAGCTGCCGATCACCGAGTTGTTGCAGGCCTGGCAGCGCGACGAACCCGGCGCGGGCGACGCATTGGCGCGCCA
GGTCTACGACGTGCTGCGCGCCACCGCGATGCGCGAACTGCGTCGCGACGCGCGCGCCGGCTTGCAGGCAACCGAGCTGG
TGCACGAGGCGTGGATGCGACTGGAACAGGGCCAGCAGGGTTTTCGTTCGCGGGCGCATTTCTATTCGGTGGCTGCGCTG
CAGATGCGCCACCTGTTGGTGGATCTGGCGCGCCAGCAGGCCAGCGCCAAGCGGTTGGGGCAGGCGGTGACGCTGACCAT
CAGCCTGTCCGACGGCGCCGCACGGCCGGAGGCATTGATGCTGGTGGCCGATGCCTTCGACAAGCTGGCCCAGGTGGACG
AGCGCAAAGCCAAGGCATTCGCATTGACCGAGCTGGTGGGTTTCAGCGTGGCCGAGGCAGCCGAACAGCTGGAGGTGTCG
GTGCCGACGCTGGAGCGCGATCTGCGTTTTGCCAGGGTGTGGCTGGCGGCGCAGCTGTGA

Upstream 100 bases:

>100_bases
GGGGGCGCGGTGATCGGGAATCCAATTGGTTACCGGCTGCGCGTTCCGCGTTGGCGCCAATGCGGGATACTGCGTGTCCA
CGCAGGCGAGATGGGCTTGG

Downstream 100 bases:

>100_bases
GCCTGGCGGCCACCGCGTGGCAACGTTTGGAAGCCTTGTTTCATCGGGCCTGCCAGCTGCCTGCGGCTGAGCGCGAGGCA
TTCGCGCGCGCGCAGGCCGG

Product: extracytoplasmic sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor; ECF Sigma Factor Family Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDARAGLQATELVHEAWMRLEQGQQGFRSRAHFYSVAAL
QMRHLLVDLARQQASAKRLGQAVTLTISLSDGAARPEALMLVADAFDKLAQVDERKAKAFALTELVGFSVAEAAEQLEVS
VPTLERDLRFARVWLAAQL

Sequences:

>Translated_179_residues
MSELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDARAGLQATELVHEAWMRLEQGQQGFRSRAHFYSVAAL
QMRHLLVDLARQQASAKRLGQAVTLTISLSDGAARPEALMLVADAFDKLAQVDERKAKAFALTELVGFSVAEAAEQLEVS
VPTLERDLRFARVWLAAQL
>Mature_178_residues
SELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDARAGLQATELVHEAWMRLEQGQQGFRSRAHFYSVAALQ
MRHLLVDLARQQASAKRLGQAVTLTISLSDGAARPEALMLVADAFDKLAQVDERKAKAFALTELVGFSVAEAAEQLEVSV
PTLERDLRFARVWLAAQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19911; Mature: 19780

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDARAGLQATELVHEAWMR
CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LEQGQQGFRSRAHFYSVAALQMRHLLVDLARQQASAKRLGQAVTLTISLSDGAARPEALM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
LVADAFDKLAQVDERKAKAFALTELVGFSVAEAAEQLEVSVPTLERDLRFARVWLAAQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SELPITELLQAWQRDEPGAGDALARQVYDVLRATAMRELRRDARAGLQATELVHEAWMR
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LEQGQQGFRSRAHFYSVAALQMRHLLVDLARQQASAKRLGQAVTLTISLSDGAARPEALM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH
LVADAFDKLAQVDERKAKAFALTELVGFSVAEAAEQLEVSVPTLERDLRFARVWLAAQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA