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The map label for this gene is rtcB [H]

Identifier: 21244683

GI number: 21244683

Start: 4660962

End: 4662185

Strand: Direct

Name: rtcB [H]

Synonym: XAC3965

Alternate gene names: 21244683

Gene position: 4660962-4662185 (Clockwise)

Preceding gene: 21244682

Following gene: 21244684

Centisome position: 90.06

GC content: 64.13

Gene sequence:

>1224_bases
ATGAGTACATCGCAACACTTTGAATTTCTGCACGCCGAAGGCAGCACGACCCCGATCAAGGGCTGGGTACGCGGCGTGCC
CCTGGAAGAACAGGCACATGCGCAGCTGCGCAATATCGCGGCGGTACCGTTTGTCGGTCCGTGGGTCGCGGTGATGCCAG
ACGTGCATCTGGGCAAGGGCGCAACCGTGGGCTCGGTGATTCCGACCCGTGGCGCCATCATCCCGGCGGCGGTCGGCGTG
GATATCGGCTGCGGCATGGCTGCAGTGCGCACCACACTGCGCGCCGCCGACCTGCCCGACAATCTGGCGCAGTTGCGTGC
CAGCATCGAGCGCAGCGTGCCGGTGGGCAACGGCCGTGGCGGCGAGCATCGCAAGCTGCCGGACAGCATTGAGAGCCGCA
TTGCGCAGTCCGGGCTGGTGCAGCGCCTGGATGCGATCAAGCAGCAGCACAAGCGCATCCGTACCGACAAGCTGGACTGC
CAGATCGGCACGCTGGGCGGCGGCAACCACTTCATCGAGATCTGCCTGGACGGAACCGATGCGGTATGGGTGATGCTGCA
CAGCGGGTCGCGCGGCACCGGCAACCTGATCGGCACGTACTTCATCGAGCGCGCGCGTGAGCAACTGGCACATCGCGTGC
TGGGCTTCCATCTACCCGACAAGGACCTGGCCTTCTTCATGCAGGGCGAGCCCTTGTTCGACGAATACGTCGAAGCGGTG
TCGTGGGCGCAGGATTACGCCCGCGAAAATCGTGAGGCGATGATGGCGCGCGTGCTGGCCGAGATGCGTCACCGCCTGCC
GAAATTCCAGCTGGAAAAGCTCGCAGTCAATTGCCACCACAACTACGTGCAGAAGGAAACGCACGGTGGCGAGGAATTGT
TGATCACCCGCAAGGGAGCGGTGAGCGCTCGTGCCGGCGAGCTGGGCATCATTCCGGGTAGCATGGGCACGCGCAGCTAC
ATCGTACGTGGGTTGGGCAATGCCGACAGTTTCCACAGCTGCAGCCACGGCGCAGGGCGTGTGATGAGCAGGACCGCTGC
ACGCGCGCAGATCACCCTGGCACAGCATCGGGAGGCCACCGCACATGTGGAATGCCGCAAGGACGCGGCAGTGATCGATG
AGTCGCCTGCGGCGTACAAGTCCATCGATGCGGTGATGGCGGCGCAGCAGGATCTGGTCGAGGTGCTGCACACCTTGCGC
CAAGTGGTGTGCATCAAGGGATAG

Upstream 100 bases:

>100_bases
CGGCCTGGATGGCGTGCTGAAGCAATTGGTGACGATCAGGCAATGAAGGTAGTGCGTGGCGGAAGGATCTGCCACGCACT
GCCGCAAGGGAATGACAACA

Downstream 100 bases:

>100_bases
CTGTCCATCAAGGAATGGAAAAGGGCCGCATTAGCGGCCCTTTTTGTTGCAGACACGTTGCGCGAGCGGGTGAGCAACCT
CATCCGCAATGCGGTGCACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSTSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKGATVGSVIPTRGAIIPAAVGV
DIGCGMAAVRTTLRAADLPDNLAQLRASIERSVPVGNGRGGEHRKLPDSIESRIAQSGLVQRLDAIKQQHKRIRTDKLDC
QIGTLGGGNHFIEICLDGTDAVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGAVSARAGELGIIPGSMGTRSY
IVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREATAHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLR
QVVCIKG

Sequences:

>Translated_407_residues
MSTSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKGATVGSVIPTRGAIIPAAVGV
DIGCGMAAVRTTLRAADLPDNLAQLRASIERSVPVGNGRGGEHRKLPDSIESRIAQSGLVQRLDAIKQQHKRIRTDKLDC
QIGTLGGGNHFIEICLDGTDAVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGAVSARAGELGIIPGSMGTRSY
IVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREATAHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLR
QVVCIKG
>Mature_406_residues
STSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKGATVGSVIPTRGAIIPAAVGVD
IGCGMAAVRTTLRAADLPDNLAQLRASIERSVPVGNGRGGEHRKLPDSIESRIAQSGLVQRLDAIKQQHKRIRTDKLDCQ
IGTLGGGNHFIEICLDGTDAVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAVS
WAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGAVSARAGELGIIPGSMGTRSYI
VRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREATAHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQ
VVCIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=446, Percent_Identity=26.0089686098655, Blast_Score=113, Evalue=4e-25,
Organism=Escherichia coli, GI2367224, Length=413, Percent_Identity=56.9007263922518, Blast_Score=462, Evalue=1e-131,
Organism=Caenorhabditis elegans, GI17506665, Length=423, Percent_Identity=25.2955082742317, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24585217, Length=447, Percent_Identity=26.3982102908277, Blast_Score=100, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44294; Mature: 44163

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKG
CCCCCCCCEEECCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCC
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDNLAQLRASIERSVPVGNGRG
CCCCCCCCCCCCEEHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
GEHRKLPDSIESRIAQSGLVQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLDGTD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCC
AVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
VSARAGELGIIPGSMGTRSYIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREAT
CCCCCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHEEHHHHCCCH
AHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG
HHEEECCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKG
CCCCCCCEEECCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCC
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDNLAQLRASIERSVPVGNGRG
CCCCCCCCCCCCEEHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
GEHRKLPDSIESRIAQSGLVQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLDGTD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCC
AVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
VSARAGELGIIPGSMGTRSYIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREAT
CCCCCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHEEHHHHCCCH
AHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG
HHEEECCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]