| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is trn2 [H]
Identifier: 21244535
GI number: 21244535
Start: 4482676
End: 4483452
Strand: Reverse
Name: trn2 [H]
Synonym: XAC3811
Alternate gene names: 21244535
Gene position: 4483452-4482676 (Counterclockwise)
Preceding gene: 21244537
Following gene: 21244525
Centisome position: 86.63
GC content: 64.48
Gene sequence:
>777_bases GTGACAACGCACCGTTGGCGGCTGGATGGACAGACCGCCCTCATCACCGGCGCCAGTGCCGGCATCGGCCTGGCCATCGC GCGCGAACTGCTCGGCTTCGGTGCCGACCTGCTGATGGTGGCACGCGATGCCGATGCCCTGGCGCAGGCGCGCGATGAGC TTGCCGACGAGTTTCCCGAGCGCGAGCTGCATGGGCTGGCCGCCGATGTCTCCGACGATGAAGAGCGCCGCGCCATCCTG GATTGGGTGGAAGACCATGCCGATGGCCTGCATCTGCTGATCAACAACGCCGGCGGCAACATTACCCGCGCCGCGATCGA TTACACCGAAGACCAGTGGCGCGGCATCTTCGAAACCAACGTGTTTTCCGCATTTGAATTGTCGCGTTATGCGCATCCGT TGCTGACGCAACATGCTGCGTCGGCAATCGTGAACGTCGGCAGCGTCTCGGGCATCACCCATGTACGTAGCGGCGCGCCG TACGGCATGACCAAGGCGGCGTTGCAGCAGATGACGCGCAACCTGGCGGTGGAGTGGGCCGAAGACGGCATCCGCGTCAA TGCGGTGGCGCCGTGGTATATCCGCACCCGCCGCACCTCCGGGCCGTTGTCCGATCCGGATTACTACGAGCAGGTGATCG AACGCACCCCGATGCGCCGCATTGGCGAACCGGAAGAAGTGGCCGCCGCAGTGGGTTTTTTGTGCCTGCCAGCCGCCAGT TACATCACCGGCGAATGCATCGCGGTGGACGGCGGCTTCTTGCGCTACGGGTTCTAG
Upstream 100 bases:
>100_bases TCATCTCAACGTGCATAACATGCTCTAACGCCCGGGCCACGCATGCGCGTCAACTGCGTTGCAGCGGCCGTTTCCTGCGC TTTTGAAGAGGATCACCCAC
Downstream 100 bases:
>100_bases CGCAGGCAACAAATACCGCCTGGTTCCGATTGGATGCGCATGGACGCAGAGCCGGCATGTTCATGCACACGCCGGTTCTG CACGCGTCTTCTTTCAGCAA
Product: tropinone reductase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MTTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPERELHGLAADVSDDEERRAIL DWVEDHADGLHLLINNAGGNITRAAIDYTEDQWRGIFETNVFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAP YGMTKAALQQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAAS YITGECIAVDGGFLRYGF
Sequences:
>Translated_258_residues MTTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPERELHGLAADVSDDEERRAIL DWVEDHADGLHLLINNAGGNITRAAIDYTEDQWRGIFETNVFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAP YGMTKAALQQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAAS YITGECIAVDGGFLRYGF >Mature_257_residues TTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPERELHGLAADVSDDEERRAILD WVEDHADGLHLLINNAGGNITRAAIDYTEDQWRGIFETNVFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAPY GMTKAALQQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAASY ITGECIAVDGGFLRYGF
Specific function: 7-Alpha-Dehydroxylation Of Cholic Acid, Yielding Deoxycholic Acid And Lithocholic Acid, Respectively. Highest Affinity With Taurochenodeoxycholic Acid. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=31.8897637795276, Blast_Score=146, Evalue=1e-35, Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=34.1269841269841, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=32.2448979591837, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=30.1204819277108, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=31.1740890688259, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=29.0983606557377, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=30.7392996108949, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=27.0161290322581, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=28.740157480315, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=30.5263157894737, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=28.2051282051282, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI59889578, Length=216, Percent_Identity=28.2407407407407, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI7705855, Length=199, Percent_Identity=25.1256281407035, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=26.9709543568465, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=26.984126984127, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI226371731, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI224922801, Length=183, Percent_Identity=26.775956284153, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=25.9067357512953, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1787905, Length=256, Percent_Identity=32.8125, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=34.8, Blast_Score=120, Evalue=7e-29, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=32.5490196078431, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=28.968253968254, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=26.5060240963855, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=28.0155642023346, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=32.9365079365079, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=34, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=31.3492063492063, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=32.3886639676113, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=28.4584980237154, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=24.3137254901961, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1787820, Length=228, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=28.9473684210526, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787545, Length=258, Percent_Identity=28.6821705426357, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=32.7935222672065, Blast_Score=135, Evalue=3e-32, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=31.0077519379845, Blast_Score=132, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=32.1285140562249, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=30.6513409961686, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=31.1538461538462, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=31.5985130111524, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=30, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=29.8449612403101, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=30.9160305343511, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=31.5384615384615, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=32.9317269076305, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=28.6274509803922, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=33.2, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=29.0076335877863, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=29.0697674418605, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=30.2681992337165, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=31.2977099236641, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=30.2681992337165, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=29.3436293436293, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.0566037735849, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=29.296875, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=28.8461538461538, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=29.5880149812734, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=29.1187739463602, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=27.1317829457364, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71997099, Length=226, Percent_Identity=28.3185840707965, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17555612, Length=216, Percent_Identity=30.0925925925926, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=27.1653543307087, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17559552, Length=236, Percent_Identity=25.8474576271186, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17532177, Length=212, Percent_Identity=27.3584905660377, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17557668, Length=204, Percent_Identity=27.9411764705882, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI25152911, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71997402, Length=192, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=266, Percent_Identity=24.812030075188, Blast_Score=90, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=30.7692307692308, Blast_Score=87, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6322067, Length=182, Percent_Identity=32.967032967033, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322227, Length=263, Percent_Identity=27.3764258555133, Blast_Score=75, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6319635, Length=258, Percent_Identity=23.6434108527132, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=34.6774193548387, Blast_Score=139, Evalue=2e-33, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=34.1269841269841, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=31.8548387096774, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=32.4, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=31.8548387096774, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=33.1983805668016, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=31.3492063492063, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=36, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI21356301, Length=185, Percent_Identity=29.1891891891892, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=29.3814432989691, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=29.3814432989691, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24584752, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI281364892, Length=199, Percent_Identity=24.6231155778894, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24640442, Length=214, Percent_Identity=26.6355140186916, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=28.6458333333333, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24584744, Length=228, Percent_Identity=27.6315789473684, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=26.7326732673267, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=26.2376237623762, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007238, Length=148, Percent_Identity=31.7567567567568, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI281364494, Length=209, Percent_Identity=28.2296650717703, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007234, Length=94, Percent_Identity=38.2978723404255, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007232, Length=94, Percent_Identity=38.2978723404255, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI22024069, Length=202, Percent_Identity=27.7227722772277, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 28187; Mature: 28056
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPE CCCCEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCH RELHGLAADVSDDEERRAILDWVEDHADGLHLLINNAGGNITRAAIDYTEDQWRGIFETN HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHCCHHHHH VFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAPYGMTKAALQQMTRNLAVEWA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH EDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAAS CCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHH YITGECIAVDGGFLRYGF HHCCEEEEECCCEEECCC >Mature Secondary Structure TTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPE CCCEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCH RELHGLAADVSDDEERRAILDWVEDHADGLHLLINNAGGNITRAAIDYTEDQWRGIFETN HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHCCHHHHH VFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAPYGMTKAALQQMTRNLAVEWA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH EDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAAS CCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHH YITGECIAVDGGFLRYGF HHCCEEEEECCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]