Click here to switch to the map view.

The map label for this gene is algR [C]

Identifier: 21244444

GI number: 21244444

Start: 4395361

End: 4396137

Strand: Reverse

Name: algR [C]

Synonym: XAC3719

Alternate gene names: 21244444

Gene position: 4396137-4395361 (Counterclockwise)

Preceding gene: 77748739

Following gene: 21244443

Centisome position: 84.94

GC content: 67.82

Gene sequence:

>777_bases
ATGAGCGCGCTGCGCGCCGTGGTTGCCGAAGACGAGGCCTTGCTGCGGCAGTCGTTGCTGACGCTGCTGGCCGAGGTGTG
CCCGCAGCTGCAGATCGTGGGCGACTGCGAGGACGGCGCCAGCGCGCTGGAGACCATCGCCGCGCAGCAGCCGGACGTGG
TGTTCCTGGATATCCGCATGCCCGGCCTCACCGGCATCGAGGTGGCGCGTGCGATGCGCGAGGTCAGCCCGCGCAGCCAG
GTGGTGTTCGTCACCGCGTACGACCAGTATGCCATCGATGCGTTCGAACACGGCGCAGTGGATTACCTGCTCAAGCCCAT
CGGCCGCGAGCGCCTGCAGGCCACCTGGCAGCGCGTGCAACAACGCGCGACTGCCGGCCAGCCGGATGGCGCGCTGTTGG
AAGCCTTGCTGCAGCGTCTGTCGGCACGCCCGGCCGCTGCCAGTCACACGCCGCCGCTCGCCTGGCTGACCGCCAGCAGC
GGGCGCGAGACGCGCTTGATCGCGCTTGACGAGGTGGCGTATTTCCAGGCCGATCAGAAGTACACGACGGTGATGACTGC
GGCCGGCGAAGCGGTGTTGCGCACGCCATTGCGCGAACTGCTGGATGTGCTGGATCCGCAGGTGTTCAAACAGATCCACC
GCTCCACCATCGTCAACATGAAGGCGGTTGCCTCGGTGGTGCGCGAGGACACCGGCAAGGGCCGGCTGGCGCTGCGCGGT
CGCAGCGAAACGCTCACCGTCAGCCAGCCGTTCATGAGCCTGTTCCGCGGCATGTAA

Upstream 100 bases:

>100_bases
CCCTGAGCCTGCCGCTGCCGACGCAGTTTGGTGCCGCGCCATCGCCGCCACCGTTGCCCACTGCGGGCGCACAGGCCGCA
CACGCCGCCCAGGTGCGGGC

Downstream 100 bases:

>100_bases
GTGCGGTGAGCAACACGTTGCGTGCAGCCGTCGTGCCGATAAGAACGGCGCACGCTGAACTGGCGTGCGCGCGCGAGTGC
GACACCCGATTCCGAACACC

Product: transcriptional regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSALRAVVAEDEALLRQSLLTLLAEVCPQLQIVGDCEDGASALETIAAQQPDVVFLDIRMPGLTGIEVARAMREVSPRSQ
VVFVTAYDQYAIDAFEHGAVDYLLKPIGRERLQATWQRVQQRATAGQPDGALLEALLQRLSARPAAASHTPPLAWLTASS
GRETRLIALDEVAYFQADQKYTTVMTAAGEAVLRTPLRELLDVLDPQVFKQIHRSTIVNMKAVASVVREDTGKGRLALRG
RSETLTVSQPFMSLFRGM

Sequences:

>Translated_258_residues
MSALRAVVAEDEALLRQSLLTLLAEVCPQLQIVGDCEDGASALETIAAQQPDVVFLDIRMPGLTGIEVARAMREVSPRSQ
VVFVTAYDQYAIDAFEHGAVDYLLKPIGRERLQATWQRVQQRATAGQPDGALLEALLQRLSARPAAASHTPPLAWLTASS
GRETRLIALDEVAYFQADQKYTTVMTAAGEAVLRTPLRELLDVLDPQVFKQIHRSTIVNMKAVASVVREDTGKGRLALRG
RSETLTVSQPFMSLFRGM
>Mature_257_residues
SALRAVVAEDEALLRQSLLTLLAEVCPQLQIVGDCEDGASALETIAAQQPDVVFLDIRMPGLTGIEVARAMREVSPRSQV
VFVTAYDQYAIDAFEHGAVDYLLKPIGRERLQATWQRVQQRATAGQPDGALLEALLQRLSARPAAASHTPPLAWLTASSG
RETRLIALDEVAYFQADQKYTTVMTAAGEAVLRTPLRELLDVLDPQVFKQIHRSTIVNMKAVASVVREDTGKGRLALRGR
SETLTVSQPFMSLFRGM

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=250, Percent_Identity=30.4, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788724, Length=225, Percent_Identity=29.7777777777778, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788550, Length=126, Percent_Identity=36.5079365079365, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1790299, Length=73, Percent_Identity=39.7260273972603, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28257; Mature: 28126

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALRAVVAEDEALLRQSLLTLLAEVCPQLQIVGDCEDGASALETIAAQQPDVVFLDIRM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEC
PGLTGIEVARAMREVSPRSQVVFVTAYDQYAIDAFEHGAVDYLLKPIGRERLQATWQRVQ
CCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QRATAGQPDGALLEALLQRLSARPAAASHTPPLAWLTASSGRETRLIALDEVAYFQADQK
HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCH
YTTVMTAAGEAVLRTPLRELLDVLDPQVFKQIHRSTIVNMKAVASVVREDTGKGRLALRG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
RSETLTVSQPFMSLFRGM
CCCEEEEHHHHHHHHCCC
>Mature Secondary Structure 
SALRAVVAEDEALLRQSLLTLLAEVCPQLQIVGDCEDGASALETIAAQQPDVVFLDIRM
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEC
PGLTGIEVARAMREVSPRSQVVFVTAYDQYAIDAFEHGAVDYLLKPIGRERLQATWQRVQ
CCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
QRATAGQPDGALLEALLQRLSARPAAASHTPPLAWLTASSGRETRLIALDEVAYFQADQK
HHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCH
YTTVMTAAGEAVLRTPLRELLDVLDPQVFKQIHRSTIVNMKAVASVVREDTGKGRLALRG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
RSETLTVSQPFMSLFRGM
CCCEEEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA