| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is pfeA [H]
Identifier: 21244345
GI number: 21244345
Start: 4292976
End: 4295219
Strand: Reverse
Name: pfeA [H]
Synonym: XAC3620
Alternate gene names: 21244345
Gene position: 4295219-4292976 (Counterclockwise)
Preceding gene: 21244346
Following gene: 21244344
Centisome position: 82.99
GC content: 63.81
Gene sequence:
>2244_bases ATGTCTGTGCCTGCACGTTGTCCCATTTTGTCCCATCGTCAGCTGGTGCTGGCCGTTGCGGTGGGTTGCGGCAGCTGCAT CTTCAGCGCTTCCGCCGAAGACATCGTCGCCGATCCGCAATCGCTGGACACCGTGCACGTCACTGCAGCGCAGATTGCGC GCCAGGCGCTGGGTACTTCGGTCATCACCGCCGAAGATATCGAACGGCGCCCGCCGGTCAACGATCTTTCGCAGCTGCTG CGCAGCATGCCCGGCGTCAATCTCACCGGCAACAGTGCCTCCGGGCAGTACGGCAATAACCGCCAGATCGATCTGCGCGG CATGGGGCCGGAAAACACGCTGATTCTGGTCGATGGCAAGCCGGTGGGATCGCGCGATGCGGTGCGCATGGGGCGTAGTG GCGAGCGCAATACACGCGGCGACACCAACTGGGTGCCGGCCGATGCGGTGGAGCGCATCGAGGTGCTGCGCGGCCCGGCG GCAGCGCGGTACGGCTCGGGCGCCTCCGGTGGCGTGGTCAACATCATCACCAAGAGACCCACCGGCGATCTGGCCGGTGC GATGACGCTGTTCGGTCTGGTCCCGCAGCACAGCGCCGAAGGCGGTGGTCAGCGCACCGGATTCCAGTTCAGTGGCCCGC TGTCGGACACGTTTTCGTTCCGTCTGTACGGCAATCTCAACAAGACCGATCCGGATTCGCTGGAGCTCAATCGCCGCTTT GCGAGTAACGCCGCCGCAGTGCCGCCGGCCGGACGCGAGGGCGTGCGCAACAAGGACATCAATGGCCTGTTGCGCTGGGA TCCGATGGAAGGGCAAGTGATCGAACTCGATGCCGGCTTCAGCCGCCAGGGCAATCTGTATGCGGGCGATCGCGCGGTCA GCGCCGATGGTCTGGCCGGCGCAGATCTCACTGTCTTGTTCGGCAGCGAAACCAACACCATGTTGCGCCGCACGTTCTCG CTCACCCATCGCGGCACCTGGGCGCTGGGAACCTCGCGCCTCACCGCTGCCTACGAAGGCACCGACAACACCCGCCTCAA CGAAGGCCTGGCCGGTGGCCCGGAAGGCTCCATCGCCACCAACCTGCTCGATTCCACCGCCACGCTCGATAACCTCAACA TCGACGGCGAGTTCAACCTGCCACTGCAGGCATGGGCCGAACAGGTGCTGACATTCGGTTTCGAGCGCCGCCAGAGCCGT CTCAACGATGCGTATTCGATGTCGCAGACGGTGAGCGCCGGTGGCGGCTTCCCCGGTCTGGATGCAGGCACGCGCAGTCC ACGCAGCCAAGCCTCGCTCAGTGCCGTGTATCTGGAAGACAACATCTACGCCAGCGAGCGGCTGACGCTGACGCCAGGCG TACGCCTGGATCACCACAGTCAGTTCGGCAACAACCTCAGCCCCAGTCTCAACGTGCAGTACAGGCTCAGCGAAGACTGG TTGCTCAAGGGCGGCATCGCGCGCGCCTTCAAGGCCCCCAACCTGTATCAGTCCAACACCAATTATCTGTATTACACGCG CGGCAATGGCTGCCCGGTGCTGTTCCCCAACCTCGGTTCGGGCTGCTATATCCAGGGCAACGACACCCTCGATCCGGAAA CCAGCATCAATAAGGAGATCGGCATCGAGTGGGCACCGCAGAGCGGCTACCATGCCTCGCTGACTTACTTCCATAACGCG TACGACGACAAGATCGTCGCCGGTCTGGTGCCGGTCGGCACCACCGCCGATGGACGCGGGCAGGTCTTTCAGTGGACCAA TGCATCGGAGGCGATCGTGCAGGGCGTGGAAGGCAATCTCACCCTGCCGTTGCTGGGTGAGCAGGGTCGCGTGTTGAAGT GGAATAGCAACATCACCTACATGATCGAGAACAAGAACACCGCGACCGGTCAGCCGCTGTCGGTGATCCCGGAATACACG GTCAACACCACGCTGGATTGGCAGCCGACGCAAGCGTTGTCGCTGCTGCTCGCCGGCACGTTCTACGGCAAGCAGGAATC GGCCACGCAGTCGAGCACCAGCGGCGGCGCCATCGCCTCCGACACGCGCGAGCCCTACGATGTATGGAGCATCAGTGCGC GCTACCGCGTCACCCGCACGGTCAGCCTCGGCGTGGGCGTGGACAACCTGTTCGACGCCCGGCTGTTTCGCGAGGGCACC AACAACACCGGTGGTGCAGCAGGCGCCGCCACCTATAACGAACCGGGGCGCGCGTATTGGGCGACGTTGCGCTTTGGTTT CTGA
Upstream 100 bases:
>100_bases CCTGCTGCACGCAGCACCCCCACCGTGTCACCTCAAGCCGTCGCCAGAGGTCTATCTCCTGTCGAGAGGTTTGAAAATGT CCGCATCACGCCGGCCATGG
Downstream 100 bases:
>100_bases TGTTTGGCCACCACAACACTGCCGCTGCCGGGCGGGCGGTGCGCGTGAGGAGAGCTTCGATGCATCGCTATCGGTGGACC GTTTGGGTTTGCATGTCGCT
Product: outer membrane receptor FepA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 747; Mature: 746
Protein sequence:
>747_residues MSVPARCPILSHRQLVLAVAVGCGSCIFSASAEDIVADPQSLDTVHVTAAQIARQALGTSVITAEDIERRPPVNDLSQLL RSMPGVNLTGNSASGQYGNNRQIDLRGMGPENTLILVDGKPVGSRDAVRMGRSGERNTRGDTNWVPADAVERIEVLRGPA AARYGSGASGGVVNIITKRPTGDLAGAMTLFGLVPQHSAEGGGQRTGFQFSGPLSDTFSFRLYGNLNKTDPDSLELNRRF ASNAAAVPPAGREGVRNKDINGLLRWDPMEGQVIELDAGFSRQGNLYAGDRAVSADGLAGADLTVLFGSETNTMLRRTFS LTHRGTWALGTSRLTAAYEGTDNTRLNEGLAGGPEGSIATNLLDSTATLDNLNIDGEFNLPLQAWAEQVLTFGFERRQSR LNDAYSMSQTVSAGGGFPGLDAGTRSPRSQASLSAVYLEDNIYASERLTLTPGVRLDHHSQFGNNLSPSLNVQYRLSEDW LLKGGIARAFKAPNLYQSNTNYLYYTRGNGCPVLFPNLGSGCYIQGNDTLDPETSINKEIGIEWAPQSGYHASLTYFHNA YDDKIVAGLVPVGTTADGRGQVFQWTNASEAIVQGVEGNLTLPLLGEQGRVLKWNSNITYMIENKNTATGQPLSVIPEYT VNTTLDWQPTQALSLLLAGTFYGKQESATQSSTSGGAIASDTREPYDVWSISARYRVTRTVSLGVGVDNLFDARLFREGT NNTGGAAGAATYNEPGRAYWATLRFGF
Sequences:
>Translated_747_residues MSVPARCPILSHRQLVLAVAVGCGSCIFSASAEDIVADPQSLDTVHVTAAQIARQALGTSVITAEDIERRPPVNDLSQLL RSMPGVNLTGNSASGQYGNNRQIDLRGMGPENTLILVDGKPVGSRDAVRMGRSGERNTRGDTNWVPADAVERIEVLRGPA AARYGSGASGGVVNIITKRPTGDLAGAMTLFGLVPQHSAEGGGQRTGFQFSGPLSDTFSFRLYGNLNKTDPDSLELNRRF ASNAAAVPPAGREGVRNKDINGLLRWDPMEGQVIELDAGFSRQGNLYAGDRAVSADGLAGADLTVLFGSETNTMLRRTFS LTHRGTWALGTSRLTAAYEGTDNTRLNEGLAGGPEGSIATNLLDSTATLDNLNIDGEFNLPLQAWAEQVLTFGFERRQSR LNDAYSMSQTVSAGGGFPGLDAGTRSPRSQASLSAVYLEDNIYASERLTLTPGVRLDHHSQFGNNLSPSLNVQYRLSEDW LLKGGIARAFKAPNLYQSNTNYLYYTRGNGCPVLFPNLGSGCYIQGNDTLDPETSINKEIGIEWAPQSGYHASLTYFHNA YDDKIVAGLVPVGTTADGRGQVFQWTNASEAIVQGVEGNLTLPLLGEQGRVLKWNSNITYMIENKNTATGQPLSVIPEYT VNTTLDWQPTQALSLLLAGTFYGKQESATQSSTSGGAIASDTREPYDVWSISARYRVTRTVSLGVGVDNLFDARLFREGT NNTGGAAGAATYNEPGRAYWATLRFGF >Mature_746_residues SVPARCPILSHRQLVLAVAVGCGSCIFSASAEDIVADPQSLDTVHVTAAQIARQALGTSVITAEDIERRPPVNDLSQLLR SMPGVNLTGNSASGQYGNNRQIDLRGMGPENTLILVDGKPVGSRDAVRMGRSGERNTRGDTNWVPADAVERIEVLRGPAA ARYGSGASGGVVNIITKRPTGDLAGAMTLFGLVPQHSAEGGGQRTGFQFSGPLSDTFSFRLYGNLNKTDPDSLELNRRFA SNAAAVPPAGREGVRNKDINGLLRWDPMEGQVIELDAGFSRQGNLYAGDRAVSADGLAGADLTVLFGSETNTMLRRTFSL THRGTWALGTSRLTAAYEGTDNTRLNEGLAGGPEGSIATNLLDSTATLDNLNIDGEFNLPLQAWAEQVLTFGFERRQSRL NDAYSMSQTVSAGGGFPGLDAGTRSPRSQASLSAVYLEDNIYASERLTLTPGVRLDHHSQFGNNLSPSLNVQYRLSEDWL LKGGIARAFKAPNLYQSNTNYLYYTRGNGCPVLFPNLGSGCYIQGNDTLDPETSINKEIGIEWAPQSGYHASLTYFHNAY DDKIVAGLVPVGTTADGRGQVFQWTNASEAIVQGVEGNLTLPLLGEQGRVLKWNSNITYMIENKNTATGQPLSVIPEYTV NTTLDWQPTQALSLLLAGTFYGKQESATQSSTSGGAIASDTREPYDVWSISARYRVTRTVSLGVGVDNLFDARLFREGTN NTGGAAGAATYNEPGRAYWATLRFGF
Specific function: Specific receptor for the siderophore ferric enterobactin [H]
COG id: COG4771
COG function: function code P; Outer membrane receptor for ferrienterochelin and colicins
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786798, Length=755, Percent_Identity=47.2847682119205, Blast_Score=646, Evalue=0.0, Organism=Escherichia coli, GI1788478, Length=757, Percent_Identity=31.439894319683, Blast_Score=285, Evalue=1e-77, Organism=Escherichia coli, GI1790405, Length=168, Percent_Identity=38.0952380952381, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1787723, Length=178, Percent_Identity=29.2134831460674, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80068; Mature: 79937
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00449 ATPASE_A ; PS00879 ODR_DC_2_2 ; PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVPARCPILSHRQLVLAVAVGCGSCIFSASAEDIVADPQSLDTVHVTAAQIARQALGTS CCCCCCCCCCCCCEEEEEEECCCCHHEECCCCHHHHCCCCCCCEEEEHHHHHHHHHHCCE VITAEDIERRPPVNDLSQLLRSMPGVNLTGNSASGQYGNNRQIDLRGMGPENTLILVDGK EEEHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECCCCCEEEEECCC PVGSRDAVRMGRSGERNTRGDTNWVPADAVERIEVLRGPAAARYGSGASGGVVNIITKRP CCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCEEEEEEECC TGDLAGAMTLFGLVPQHSAEGGGQRTGFQFSGPLSDTFSFRLYGNLNKTDPDSLELNRRF CCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHH ASNAAAVPPAGREGVRNKDINGLLRWDPMEGQVIELDAGFSRQGNLYAGDRAVSADGLAG CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEECCCEECCCCCCC ADLTVLFGSETNTMLRRTFSLTHRGTWALGTSRLTAAYEGTDNTRLNEGLAGGPEGSIAT CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHH NLLDSTATLDNLNIDGEFNLPLQAWAEQVLTFGFERRQSRLNDAYSMSQTVSAGGGFPGL HHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC DAGTRSPRSQASLSAVYLEDNIYASERLTLTPGVRLDHHSQFGNNLSPSLNVQYRLSEDW CCCCCCCCCCCCEEEEEEECCEEECCEEEECCCCEECCHHHCCCCCCCCEEEEEEECCCE LLKGGIARAFKAPNLYQSNTNYLYYTRGNGCPVLFPNLGSGCYIQGNDTLDPETSINKEI EEECCHHHHHCCCCCEECCCCEEEEECCCCCEEECCCCCCCEEEECCCCCCCCCCCCHHC GIEWAPQSGYHASLTYFHNAYDDKIVAGLVPVGTTADGRGQVFQWTNASEAIVQGVEGNL CEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHCCCCCE TLPLLGEQGRVLKWNSNITYMIENKNTATGQPLSVIPEYTVNTTLDWQPTQALSLLLAGT EEEEECCCCCEEEECCCEEEEEECCCCCCCCCCEECCCCEECCEECCCHHHHHHHHHHHH FYGKQESATQSSTSGGAIASDTREPYDVWSISARYRVTRTVSLGVGVDNLFDARLFREGT HCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHCCC NNTGGAAGAATYNEPGRAYWATLRFGF CCCCCCCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure SVPARCPILSHRQLVLAVAVGCGSCIFSASAEDIVADPQSLDTVHVTAAQIARQALGTS CCCCCCCCCCCCEEEEEEECCCCHHEECCCCHHHHCCCCCCCEEEEHHHHHHHHHHCCE VITAEDIERRPPVNDLSQLLRSMPGVNLTGNSASGQYGNNRQIDLRGMGPENTLILVDGK EEEHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECCCCCEEEEECCC PVGSRDAVRMGRSGERNTRGDTNWVPADAVERIEVLRGPAAARYGSGASGGVVNIITKRP CCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCEEEEEEECC TGDLAGAMTLFGLVPQHSAEGGGQRTGFQFSGPLSDTFSFRLYGNLNKTDPDSLELNRRF CCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHH ASNAAAVPPAGREGVRNKDINGLLRWDPMEGQVIELDAGFSRQGNLYAGDRAVSADGLAG CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEECCCEECCCCCCC ADLTVLFGSETNTMLRRTFSLTHRGTWALGTSRLTAAYEGTDNTRLNEGLAGGPEGSIAT CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHH NLLDSTATLDNLNIDGEFNLPLQAWAEQVLTFGFERRQSRLNDAYSMSQTVSAGGGFPGL HHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC DAGTRSPRSQASLSAVYLEDNIYASERLTLTPGVRLDHHSQFGNNLSPSLNVQYRLSEDW CCCCCCCCCCCCEEEEEEECCEEECCEEEECCCCEECCHHHCCCCCCCCEEEEEEECCCE LLKGGIARAFKAPNLYQSNTNYLYYTRGNGCPVLFPNLGSGCYIQGNDTLDPETSINKEI EEECCHHHHHCCCCCEECCCCEEEEECCCCCEEECCCCCCCEEEECCCCCCCCCCCCHHC GIEWAPQSGYHASLTYFHNAYDDKIVAGLVPVGTTADGRGQVFQWTNASEAIVQGVEGNL CEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEECCCCHHHHHCCCCCE TLPLLGEQGRVLKWNSNITYMIENKNTATGQPLSVIPEYTVNTTLDWQPTQALSLLLAGT EEEEECCCCCEEEECCCEEEEEECCCCCCCCCCEECCCCEECCEECCCHHHHHHHHHHHH FYGKQESATQSSTSGGAIASDTREPYDVWSISARYRVTRTVSLGVGVDNLFDARLFREGT HCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEEEECCCCHHHHHHHHHHCCC NNTGGAAGAATYNEPGRAYWATLRFGF CCCCCCCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8419284; 10984043 [H]