| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is xanB [H]
Identifier: 21244305
GI number: 21244305
Start: 4245585
End: 4246988
Strand: Direct
Name: xanB [H]
Synonym: XAC3580
Alternate gene names: 21244305
Gene position: 4245585-4246988 (Clockwise)
Preceding gene: 21244304
Following gene: 21244311
Centisome position: 82.03
GC content: 63.11
Gene sequence:
>1404_bases ATGAGCGACGTCCTACCCATTATCTTGTCCGGCGGCTCCGGCACGCGCCTGTGGCCGCTGTCGCGCGAGTCCTATCCCAA GCAGTTCCTGCCGCTGGTCGGCGACAAGAGCATGCTGCAGTCCACCTGGCTGCGCGCGGCTCCCGTCGCGGGCCACGCCC CCATCGTGGTCGCCAACGAAGAACACCGGTTCATGGCCGCCGAGCAACTGCAACAGTTAGGAGTGAAGCCCTCGGCCATC CTGCTGGAGCCCAAGGGACGCAACACGGCGCCGGCAATTGCCGTTGCAGCACTGGAAGCGACCCGCGATGGCGCCGATCC GCTCTTGCTGGTGCTGCCTTCCGATCACGTCATTCAAAACGAGGCTGCGTTTCAGGCAGCAGTGACCTTGGCAGCGACTG CTGCCGAACAAGGCAAGCTGGTCACCTTCGGCATCAAGCCGACTGCGCCCGAAACCGGCTATGGCTATATCAAGGCAAGC GCCGGCGCTGGTGCGAGCGCGGTCGAGCGCTTCGTCGAGAAGCCCGATCTCGCGACCGCGCAAAGCTACCTGGCAAGCGG CGAGTACTACTGGAACAGCGGCATGTTCCTGTTCCGTGCGTCGCGTTACCTGGAAGAATTGCGCAAGTTCCATCCGGCCA TCGCCGATGCGTGCCAAAAGGCGTGGGAAAACGGCAAGCGCGACGCCGATTTCACTCGTCTGGACAAGGACGCCTTCGCC GCCAGCCCGTCGGATTCGATCGACTATGCCGTGATGGAAAAGACCGCCGATGCGGTCGTGGTGCCATTGGACGCGGGCTG GAACGACGTCGGTTCGTGGTCTTCGCTGCTGGATGTTTCCAACCAGGATGCGCAAGGCAACGCGCACCATGGCGACGTGA TCCAGCTCGATTGCCAGAACACCTACGCGTACGGCTCGCGCCTGATCGCCATGGTGGGGCTTGAGGATGTGGTGGTCGTT GAAACGCCGGACGCCGTGCTGGTCGGCCACCGCGACCGCATTCAGGAGGTCAAGGACGTCGTCAGCCAGATCAAGACCGC TGGCCGTTCCGAGGCCACCTGGCATCGCAAGGTCTATCGTCCATGGGGCGCTTACGATTCCATCGACATGGGCCAGCGGC ACCAGGTCAAGCGCATCACCGTCAAACCGGGTGCGGTGCTGAGCCTGCAGATGCATCACCACCGCGCCGAACACTGGATC GTGGTGAGTGGCACTGCCGAAGTAACGCGTGGCGAAGAAGTCCTGCTGCTGACCGAAAACCAGAGCACCTACATCCCGCT GGGCGTCACCCATCGCCTGCGCAATCCGGGCAAGCTGCCGCTGGAACTGATCGAAGTGCAGTCCGGCAGCTATCTGGGCG AAGACGATATCGTGCGCTTCGAAGACACCTACGGCCGCGCCTAA
Upstream 100 bases:
>100_bases CCGCACTGCTGGAAACGCGTACGCAGGAAATTTCTAACCTGCTGCGCGGCTGATTGACCCCTCTCCCACCCATAGACGCA CTTTGGAGTTTCCCCCGCCC
Downstream 100 bases:
>100_bases TCGCGCGTCTCAACGTAGACTGCAATATCGACGGCGGCCTATGGCCGCCGTCCTGCGTTATCCATGGCCCACTTTATGGC GGCACGCTGCGCGCGCAGAT
Product: GDP-mannose pyrophosphorylase
Products: NA
Alternate protein names: Mannose-6-phosphate isomerase; Phosphohexomutase; Phosphomannose isomerase; PMI; Mannose-1-phosphate guanylyl transferase; GDP-mannose pyrophosphorylase; GMP; GMPP [H]
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MSDVLPIILSGGSGTRLWPLSRESYPKQFLPLVGDKSMLQSTWLRAAPVAGHAPIVVANEEHRFMAAEQLQQLGVKPSAI LLEPKGRNTAPAIAVAALEATRDGADPLLLVLPSDHVIQNEAAFQAAVTLAATAAEQGKLVTFGIKPTAPETGYGYIKAS AGAGASAVERFVEKPDLATAQSYLASGEYYWNSGMFLFRASRYLEELRKFHPAIADACQKAWENGKRDADFTRLDKDAFA ASPSDSIDYAVMEKTADAVVVPLDAGWNDVGSWSSLLDVSNQDAQGNAHHGDVIQLDCQNTYAYGSRLIAMVGLEDVVVV ETPDAVLVGHRDRIQEVKDVVSQIKTAGRSEATWHRKVYRPWGAYDSIDMGQRHQVKRITVKPGAVLSLQMHHHRAEHWI VVSGTAEVTRGEEVLLLTENQSTYIPLGVTHRLRNPGKLPLELIEVQSGSYLGEDDIVRFEDTYGRA
Sequences:
>Translated_467_residues MSDVLPIILSGGSGTRLWPLSRESYPKQFLPLVGDKSMLQSTWLRAAPVAGHAPIVVANEEHRFMAAEQLQQLGVKPSAI LLEPKGRNTAPAIAVAALEATRDGADPLLLVLPSDHVIQNEAAFQAAVTLAATAAEQGKLVTFGIKPTAPETGYGYIKAS AGAGASAVERFVEKPDLATAQSYLASGEYYWNSGMFLFRASRYLEELRKFHPAIADACQKAWENGKRDADFTRLDKDAFA ASPSDSIDYAVMEKTADAVVVPLDAGWNDVGSWSSLLDVSNQDAQGNAHHGDVIQLDCQNTYAYGSRLIAMVGLEDVVVV ETPDAVLVGHRDRIQEVKDVVSQIKTAGRSEATWHRKVYRPWGAYDSIDMGQRHQVKRITVKPGAVLSLQMHHHRAEHWI VVSGTAEVTRGEEVLLLTENQSTYIPLGVTHRLRNPGKLPLELIEVQSGSYLGEDDIVRFEDTYGRA >Mature_466_residues SDVLPIILSGGSGTRLWPLSRESYPKQFLPLVGDKSMLQSTWLRAAPVAGHAPIVVANEEHRFMAAEQLQQLGVKPSAIL LEPKGRNTAPAIAVAALEATRDGADPLLLVLPSDHVIQNEAAFQAAVTLAATAAEQGKLVTFGIKPTAPETGYGYIKASA GAGASAVERFVEKPDLATAQSYLASGEYYWNSGMFLFRASRYLEELRKFHPAIADACQKAWENGKRDADFTRLDKDAFAA SPSDSIDYAVMEKTADAVVVPLDAGWNDVGSWSSLLDVSNQDAQGNAHHGDVIQLDCQNTYAYGSRLIAMVGLEDVVVVE TPDAVLVGHRDRIQEVKDVVSQIKTAGRSEATWHRKVYRPWGAYDSIDMGQRHQVKRITVKPGAVLSLQMHHHRAEHWIV VSGTAEVTRGEEVLLLTENQSTYIPLGVTHRLRNPGKLPLELIEVQSGSYLGEDDIVRFEDTYGRA
Specific function: Involved in xanthan production [H]
COG id: COG0836
COG function: function code M; Mannose-1-phosphate guanylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannose-6-phosphate isomerase type 2 family [H]
Homologues:
Organism=Escherichia coli, GI1788362, Length=474, Percent_Identity=62.0253164556962, Blast_Score=571, Evalue=1e-164,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR006375 - InterPro: IPR001538 - InterPro: IPR005835 - InterPro: IPR014710 [H]
Pfam domain/function: PF01050 MannoseP_isomer; PF00483 NTP_transferase [H]
EC number: =5.3.1.8; =2.7.7.13 [H]
Molecular weight: Translated: 50961; Mature: 50830
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVLPIILSGGSGTRLWPLSRESYPKQFLPLVGDKSMLQSTWLRAAPVAGHAPIVVANE CCCCEEEEEECCCCCEEEECCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECC EHRFMAAEQLQQLGVKPSAILLEPKGRNTAPAIAVAALEATRDGADPLLLVLPSDHVIQN CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEHHCCCCCCCEEEEECCCCEECC EAAFQAAVTLAATAAEQGKLVTFGIKPTAPETGYGYIKASAGAGASAVERFVEKPDLATA HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHH QSYLASGEYYWNSGMFLFRASRYLEELRKFHPAIADACQKAWENGKRDADFTRLDKDAFA HHHHHCCCEEECCCEEEEHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHCCHHHHC ASPSDSIDYAVMEKTADAVVVPLDAGWNDVGSWSSLLDVSNQDAQGNAHHGDVIQLDCQN CCCCCCCCHHHEECCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCC TYAYGSRLIAMVGLEDVVVVETPDAVLVGHRDRIQEVKDVVSQIKTAGRSEATWHRKVYR CHHHHHHEEEEECCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC PWGAYDSIDMGQRHQVKRITVKPGAVLSLQMHHHRAEHWIVVSGTAEVTRGEEVLLLTEN CCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCEECCCCEEEEEECC QSTYIPLGVTHRLRNPGKLPLELIEVQSGSYLGEDDIVRFEDTYGRA CCEEEEECHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCC >Mature Secondary Structure SDVLPIILSGGSGTRLWPLSRESYPKQFLPLVGDKSMLQSTWLRAAPVAGHAPIVVANE CCCEEEEEECCCCCEEEECCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECC EHRFMAAEQLQQLGVKPSAILLEPKGRNTAPAIAVAALEATRDGADPLLLVLPSDHVIQN CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEHHCCCCCCCEEEEECCCCEECC EAAFQAAVTLAATAAEQGKLVTFGIKPTAPETGYGYIKASAGAGASAVERFVEKPDLATA HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHH QSYLASGEYYWNSGMFLFRASRYLEELRKFHPAIADACQKAWENGKRDADFTRLDKDAFA HHHHHCCCEEECCCEEEEHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHCCHHHHC ASPSDSIDYAVMEKTADAVVVPLDAGWNDVGSWSSLLDVSNQDAQGNAHHGDVIQLDCQN CCCCCCCCHHHEECCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCC TYAYGSRLIAMVGLEDVVVVETPDAVLVGHRDRIQEVKDVVSQIKTAGRSEATWHRKVYR CHHHHHHEEEEECCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC PWGAYDSIDMGQRHQVKRITVKPGAVLSLQMHHHRAEHWIVVSGTAEVTRGEEVLLLTEN CCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCEECCCCEEEEEECC QSTYIPLGVTHRLRNPGKLPLELIEVQSGSYLGEDDIVRFEDTYGRA CCEEEEECHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1370280; 11589581 [H]