| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yabI [H]
Identifier: 21244158
GI number: 21244158
Start: 4041331
End: 4043418
Strand: Direct
Name: yabI [H]
Synonym: XAC3433
Alternate gene names: 21244158
Gene position: 4041331-4043418 (Clockwise)
Preceding gene: 21244155
Following gene: 21244163
Centisome position: 78.08
GC content: 66.81
Gene sequence:
>2088_bases ATGAACTCATGGATCGGCGCCACGCTGGAGTGGATCGGACACCACCCCACCTTGGCTGGCGTGGTGATCTTTGGCATCGC ATTTTGTGATGCGGTCATCGTGCTGGGCGCCATCGTGCCTGCGTTGCCGTTGCTGTTCGCCATTGGCGTGCTCATCGGGC TCGGGCAGATCAACGGCCCCTATGCGGTGGCGTGCGCCACCCTGGGCGCCTTCGTTGGCGATGCGTTGAGCTTCTGGGTC GGCCATCGCTGGGGCCATCAGCTGCACACCTACTGGCCATTCCGGCGTTACCCGCAACTGCTGGAGCGCGGCGAGCTGCT GTTCCGACGCAATGCCTTCAAAAGCATCCTGATTGCGCGCTACGTGGGTGCAGTGCGCCCGTTCGTACCGGCGATTGCCG GCATGTCGCGCATGCCGTTCAAACGGTATCTGGTCGCCAGCGGCCTGGCCTGCGTGTCGTGGGCGTTGTTGTTCCTGGTG CCCGGCTGGGTGCTGGGCACGGCCTACGACGCAGTGGCCGCGGTGGCCGGGCGGCTATTTGTGGTGGTTGCATTGCTGGC GGCCGTGATCGGGCTTGCCTGGGCGGTCGTGCTGTATTCGTACCGCTGGTCGGCCGGCCATCTGGATGCCTTGCTGGCAC GTCTGCTGGAGTGGTCGCACCGGCACCCGGTCCTGGGGAATTGGTCGGTCGGCGTATTCGACCCGCGCCGTCGCGAATCG GTGCCGCTGGCCATGATGGCCTTGATGCTCTTGCTGCTCGGCTGGGGCTGGTTCGTGCTGCTGATGGTGGTGCTGGCGCA CGGCGAGCCATTGCGCGTGGACCTGGCCGTGCACGACCTGATGCTGGCGCTGCGTAACCCATTGGCCGACTACCCGATGG TGGCGCTGGCCTCATTGGGCGACTGGCAGGTGCTGTTGCCGGCCATCGCCGCCGCGATGGGCTATCTGGCCTGGCGTCGC CGCTGGATGGCCGTGGCCCATTGGGTGATCGCGCTGGCCTTCGGCCTGGCGCTCACCCAGCTGCTTGGCGCCACCGTGCA GGTGGTGCGCCCGCCTGCGGCCAGCAGCGGTTTCGGCTTTCCATCGGTTGCGGTCACCATGGCCACGATCGCCTTCGGCT TTTTCGCGCTGTTGATCGCGCGCGAGTTGCCTGGCCGCCGCCGCGTGTGGCCGTATCTGGTCAGCGGCGCCATCGTCTCG CTGATCGGTTTTGCACGTTTGTATCTCGGTGCGCACTGGCTCAGCGACGTCGTCGGCGGCATGTTGTTCGGCATCTTCTG GCTGCTGGTGCTGGGCATTGCCTACCGCCGCCGTGCCACCCGCGCGTTCTGGGTCAAGCCGGTGTCGTGGATCTTCTATG GGGTGTTCGTGAGTTGTGCCATTTATTTTGCGCCGCGCAACCTCGACATCAAGCTGGCCAAGTTCGAACCGCCTCCGCCG GCATTGATGAAGTTGCCCGCACACGAGTGGTGGGAAGAGCAATGGCGCCTGCTGCCGGCACGCCGTAACGAATTCGACGA CGATCAGCGTTGGCCGCTGGACGTCCAGTTGGCCGGCCCGCTCGCCCCGTTGCAGCGCCAGCTCCAGGCGCGCGGCTGGC GGGTCCAGCCCCAGGCGGGCTGGGAACAGGCGCTGCACCTGCTCGATGTCAGCGGCCGCCCCGACGAAGTACCGATTCTG CCGGCCACGCTGGAGACGCAGGTCGAAGCCCTGTTGATGGTGCGCCACGCCGCGCCTGGCCACGTGCATGTGCTGCGCCT GTGGCCGGCGGCTGCGCGCCTGCAGCCGGATGCACAACCGCTGTGGGTGGGCAGCACCCAGACCTTGCGCTACAGCCGCC ACTTCAGCCTGATCGGCCTGTGGTACCCGCTGCGCGGCGTCGATCCTGCACTGAGCGCATTGCGCGAGGCACTCGGCCCG CTGCCCCATCGCATGGAACAGCGTCGTCGCTCGCAGGTGCCGGTGATCCTGATCGACAGCACCTCGGGCAGTGCGGTGCG TGGCGAGGACAAACACAACGCTGTGCCGCGGACGGACACCGCTGCGTTCGATCCTGCTGCATCGGGTCCGCCGCAACAAC GCCGTTGA
Upstream 100 bases:
>100_bases CGCGTGCGGCAGCTGCATGGCCGCAACCTCAGGTGAAGCCAATCCCCCGATGTGAGGACGATGCAGGTCAGGCGCCGCCG CGCCCACCTATAATTCAGGT
Downstream 100 bases:
>100_bases TCGATCGGGCAATAGGCGATTGGCCGGCGATCGCGCGATGGGTCGAGATGGGGTGTCAGCAACAGCTATTGAACCCTGTC TCGATGGTGACGTGCTGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 695; Mature: 695
Protein sequence:
>695_residues MNSWIGATLEWIGHHPTLAGVVIFGIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGPYAVACATLGAFVGDALSFWV GHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSILIARYVGAVRPFVPAIAGMSRMPFKRYLVASGLACVSWALLFLV PGWVLGTAYDAVAAVAGRLFVVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVGVFDPRRRES VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLGDWQVLLPAIAAAMGYLAWRR RWMAVAHWVIALAFGLALTQLLGATVQVVRPPAASSGFGFPSVAVTMATIAFGFFALLIARELPGRRRVWPYLVSGAIVS LIGFARLYLGAHWLSDVVGGMLFGIFWLLVLGIAYRRRATRAFWVKPVSWIFYGVFVSCAIYFAPRNLDIKLAKFEPPPP ALMKLPAHEWWEEQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLQARGWRVQPQAGWEQALHLLDVSGRPDEVPIL PATLETQVEALLMVRHAAPGHVHVLRLWPAAARLQPDAQPLWVGSTQTLRYSRHFSLIGLWYPLRGVDPALSALREALGP LPHRMEQRRRSQVPVILIDSTSGSAVRGEDKHNAVPRTDTAAFDPAASGPPQQRR
Sequences:
>Translated_695_residues MNSWIGATLEWIGHHPTLAGVVIFGIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGPYAVACATLGAFVGDALSFWV GHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSILIARYVGAVRPFVPAIAGMSRMPFKRYLVASGLACVSWALLFLV PGWVLGTAYDAVAAVAGRLFVVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVGVFDPRRRES VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLGDWQVLLPAIAAAMGYLAWRR RWMAVAHWVIALAFGLALTQLLGATVQVVRPPAASSGFGFPSVAVTMATIAFGFFALLIARELPGRRRVWPYLVSGAIVS LIGFARLYLGAHWLSDVVGGMLFGIFWLLVLGIAYRRRATRAFWVKPVSWIFYGVFVSCAIYFAPRNLDIKLAKFEPPPP ALMKLPAHEWWEEQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLQARGWRVQPQAGWEQALHLLDVSGRPDEVPIL PATLETQVEALLMVRHAAPGHVHVLRLWPAAARLQPDAQPLWVGSTQTLRYSRHFSLIGLWYPLRGVDPALSALREALGP LPHRMEQRRRSQVPVILIDSTSGSAVRGEDKHNAVPRTDTAAFDPAASGPPQQRR >Mature_695_residues MNSWIGATLEWIGHHPTLAGVVIFGIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGPYAVACATLGAFVGDALSFWV GHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSILIARYVGAVRPFVPAIAGMSRMPFKRYLVASGLACVSWALLFLV PGWVLGTAYDAVAAVAGRLFVVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVGVFDPRRRES VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLGDWQVLLPAIAAAMGYLAWRR RWMAVAHWVIALAFGLALTQLLGATVQVVRPPAASSGFGFPSVAVTMATIAFGFFALLIARELPGRRRVWPYLVSGAIVS LIGFARLYLGAHWLSDVVGGMLFGIFWLLVLGIAYRRRATRAFWVKPVSWIFYGVFVSCAIYFAPRNLDIKLAKFEPPPP ALMKLPAHEWWEEQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLQARGWRVQPQAGWEQALHLLDVSGRPDEVPIL PATLETQVEALLMVRHAAPGHVHVLRLWPAAARLQPDAQPLWVGSTQTLRYSRHFSLIGLWYPLRGVDPALSALREALGP LPHRMEQRRRSQVPVILIDSTSGSAVRGEDKHNAVPRTDTAAFDPAASGPPQQRR
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dedA family [H]
Homologues:
Organism=Escherichia coli, GI1786252, Length=164, Percent_Identity=30.4878048780488, Blast_Score=93, Evalue=6e-20, Organism=Escherichia coli, GI1788656, Length=151, Percent_Identity=30.4635761589404, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015414 [H]
Pfam domain/function: PF09335 SNARE_assoc [H]
EC number: NA
Molecular weight: Translated: 77062; Mature: 77062
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSWIGATLEWIGHHPTLAGVVIFGIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGP CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC YAVACATLGAFVGDALSFWVGHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSILIAR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YVGAVRPFVPAIAGMSRMPFKRYLVASGLACVSWALLFLVPGWVLGTAYDAVAAVAGRLF HHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVGVFDPRRRES HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHCCC DWQVLLPAIAAAMGYLAWRRRWMAVAHWVIALAFGLALTQLLGATVQVVRPPAASSGFGF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC PSVAVTMATIAFGFFALLIARELPGRRRVWPYLVSGAIVSLIGFARLYLGAHWLSDVVGG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLFGIFWLLVLGIAYRRRATRAFWVKPVSWIFYGVFVSCAIYFAPRNLDIKLAKFEPPPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCH ALMKLPAHEWWEEQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLQARGWRVQPQAG HHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCC WEQALHLLDVSGRPDEVPILPATLETQVEALLMVRHAAPGHVHVLRLWPAAARLQPDAQP HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCC LWVGSTQTLRYSRHFSLIGLWYPLRGVDPALSALREALGPLPHRMEQRRRSQVPVILIDS EEECCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEC TSGSAVRGEDKHNAVPRTDTAAFDPAASGPPQQRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNSWIGATLEWIGHHPTLAGVVIFGIAFCDAVIVLGAIVPALPLLFAIGVLIGLGQINGP CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC YAVACATLGAFVGDALSFWVGHRWGHQLHTYWPFRRYPQLLERGELLFRRNAFKSILIAR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YVGAVRPFVPAIAGMSRMPFKRYLVASGLACVSWALLFLVPGWVLGTAYDAVAAVAGRLF HHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVVALLAAVIGLAWAVVLYSYRWSAGHLDALLARLLEWSHRHPVLGNWSVGVFDPRRRES HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC VPLAMMALMLLLLGWGWFVLLMVVLAHGEPLRVDLAVHDLMLALRNPLADYPMVALASLG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHCCC DWQVLLPAIAAAMGYLAWRRRWMAVAHWVIALAFGLALTQLLGATVQVVRPPAASSGFGF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC PSVAVTMATIAFGFFALLIARELPGRRRVWPYLVSGAIVSLIGFARLYLGAHWLSDVVGG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLFGIFWLLVLGIAYRRRATRAFWVKPVSWIFYGVFVSCAIYFAPRNLDIKLAKFEPPPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCH ALMKLPAHEWWEEQWRLLPARRNEFDDDQRWPLDVQLAGPLAPLQRQLQARGWRVQPQAG HHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCC WEQALHLLDVSGRPDEVPILPATLETQVEALLMVRHAAPGHVHVLRLWPAAARLQPDAQP HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCC LWVGSTQTLRYSRHFSLIGLWYPLRGVDPALSALREALGPLPHRMEQRRRSQVPVILIDS EEECCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEC TSGSAVRGEDKHNAVPRTDTAAFDPAASGPPQQRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1630901; 9278503 [H]