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The map label for this gene is radC [C]

Identifier: 21243995

GI number: 21243995

Start: 3850707

End: 3851270

Strand: Reverse

Name: radC [C]

Synonym: XAC3269

Alternate gene names: 21243995

Gene position: 3851270-3850707 (Counterclockwise)

Preceding gene: 21243996

Following gene: 21243993

Centisome position: 74.41

GC content: 64.18

Gene sequence:

>564_bases
GTGCTCACTCCCGGGTGCGGTAGGGCCGGACGCTTCGCCTGTCGGTTCCCACGAGGCGCACAACGCGCTGGTGGAGAAGA
ACCGATGAAGCGCACCCAAGACCGAGCAGTCCAGTATCAACTTCAGATGGACGAGGAGGGCATCTTGCTCGCCGCCGCGA
CCATCTTGGAACAGCGCCTTCAACGCCAAGGCCGCATCCACAGCCCCGACCAAGCCGGCGACTACCTAGTTGCCCGCTGC
GCTCACCTGCCGCACGAAGTCTTCGGGGTCGTCTTCCTGGACAACCAGCACCACATCATTTCTACCGAGCACTTGTTCAC
CGGCACCGTCGACGGGTGCGATGTCCACCCGCGAGTCGTGGCAAAGCGCGCTCTTGAGCTCAGCGCTGCCGCAGTCATCC
TGTTTCACAATCACCCGAGCGGCAACCCGGAGCCCAGCGAAGCCGACCGCAAGGTCACCGAACGCCTGAAGCAGGCGCTG
TCGCTTCTGGACATCCGCGTCCTCGACCACCTGGTTATTGGCGGCCAGCAGCACGTCAGCCTGGCCAGCAGGGGGTGGGC
ATAG

Upstream 100 bases:

>100_bases
CTTAACGGAAATCCTTGCTCCGCTGTCCCGACCGCAAGGGCAGGCCTCCTCCTCGACGCTGAAGCTCTGTTGCGGCCCTT
CGCTGCGCGCCGCTTGAGCG

Downstream 100 bases:

>100_bases
CCCGCCCCCTCATACCTGTCCCTAGAAGCAGACGACAGCGGCAGTCCCGTGCTGCCGCTCCGAGGTTCACATCCACCAAG
CCACGGCTCCTCTCAAAAGC

Product: RadC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MLTPGCGRAGRFACRFPRGAQRAGGEEPMKRTQDRAVQYQLQMDEEGILLAAATILEQRLQRQGRIHSPDQAGDYLVARC
AHLPHEVFGVVFLDNQHHIISTEHLFTGTVDGCDVHPRVVAKRALELSAAAVILFHNHPSGNPEPSEADRKVTERLKQAL
SLLDIRVLDHLVIGGQQHVSLASRGWA

Sequences:

>Translated_187_residues
MLTPGCGRAGRFACRFPRGAQRAGGEEPMKRTQDRAVQYQLQMDEEGILLAAATILEQRLQRQGRIHSPDQAGDYLVARC
AHLPHEVFGVVFLDNQHHIISTEHLFTGTVDGCDVHPRVVAKRALELSAAAVILFHNHPSGNPEPSEADRKVTERLKQAL
SLLDIRVLDHLVIGGQQHVSLASRGWA
>Mature_187_residues
MLTPGCGRAGRFACRFPRGAQRAGGEEPMKRTQDRAVQYQLQMDEEGILLAAATILEQRLQRQGRIHSPDQAGDYLVARC
AHLPHEVFGVVFLDNQHHIISTEHLFTGTVDGCDVHPRVVAKRALELSAAAVILFHNHPSGNPEPSEADRKVTERLKQAL
SLLDIRVLDHLVIGGQQHVSLASRGWA

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=141, Percent_Identity=41.1347517730496, Blast_Score=128, Evalue=2e-31,
Organism=Escherichia coli, GI1788997, Length=135, Percent_Identity=48.1481481481481, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1788312, Length=142, Percent_Identity=47.887323943662, Blast_Score=125, Evalue=1e-30,
Organism=Escherichia coli, GI2367100, Length=112, Percent_Identity=54.4642857142857, Blast_Score=122, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 20645; Mature: 20645

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTPGCGRAGRFACRFPRGAQRAGGEEPMKRTQDRAVQYQLQMDEEGILLAAATILEQRL
CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHH
QRQGRIHSPDQAGDYLVARCAHLPHEVFGVVFLDNQHHIISTEHLFTGTVDGCDVHPRVV
HHCCCCCCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCEEECCCEEECCCCCCCCCHHHH
AKRALELSAAAVILFHNHPSGNPEPSEADRKVTERLKQALSLLDIRVLDHLVIGGQQHVS
HHHHHHHCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LASRGWA
HHCCCCC
>Mature Secondary Structure
MLTPGCGRAGRFACRFPRGAQRAGGEEPMKRTQDRAVQYQLQMDEEGILLAAATILEQRL
CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHH
QRQGRIHSPDQAGDYLVARCAHLPHEVFGVVFLDNQHHIISTEHLFTGTVDGCDVHPRVV
HHCCCCCCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCEEECCCEEECCCCCCCCCHHHH
AKRALELSAAAVILFHNHPSGNPEPSEADRKVTERLKQALSLLDIRVLDHLVIGGQQHVS
HHHHHHHCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LASRGWA
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]