| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is bfeA [H]
Identifier: 21243934
GI number: 21243934
Start: 3776389
End: 3778824
Strand: Direct
Name: bfeA [H]
Synonym: XAC3207
Alternate gene names: 21243934
Gene position: 3776389-3778824 (Clockwise)
Preceding gene: 21243929
Following gene: 21243935
Centisome position: 72.97
GC content: 65.31
Gene sequence:
>2436_bases ATGACCCGCCCCACCCTTTCGGTGATTGGCATGGCCATCGCCGCCGTGCTCAGCGCCAACGCGCAAGCCCAGCAGGCCGA TGCCGGCGCCACCACCCTGGACACCGTGATCGTCACCGGTACCCGTGCCAGCGACCGCACCGTGCTGGAATCCACCGTAC CGGTGGACGTGCTCACCGCCGAAGACATTCGCAAGGCCGGCGTGGTCAACGGCGAGCTTGGCAGCGCGCTGCAGGCGCTG CTGCCCTCCTTCAACTTCCCGCGTCAGTCCAACTCCGGTGGCGCCGACCATATCCGCGCCGCGCAGCTACGCGGGCTCTC ACCCGACCAGGTGCTGGTACTGGTCAATGGCAAACGCCGCCACACCTCGGCGCTGGTCAACACCGACAGCAAGATCGGCA AGGGCACCACGCCGGTGGATTTCAATTCCATCCCGATCAACGCGATCAAGCGCATCGAAGTGCTGCGCGACGGTGCCGGC GCGCAATACGGCTCGGATGCGATTGCCGGCGTCATCAACGTGATCCTGGACGACAACCCCGAGCGCGGCGAACTGGAAGC CAGCTTCGGCGCCTATAACACCGATGTCGCGCCGATCGACCGCCGCGTTACCGACGGCCAGACCAGCTATGCCAGCGCCA AGGTGGGCACGCTGCTGGGCGACGACGGCGGCTTCTTCAAGGTTGGCCTGGAGCTGAAAAACCGCGAGGCGACCAACCGC GCCGGCTTCGACCAGATTCCCTCGTTCGAAGAACAGACCCCGGCCAATCTGGCGCTGCGGGGCCAGCGCAATTACGTGCT CGGCGATGGCGCCACCAAGGGTCTGAATGCCTGGCTCAACAGCAAGGTTCCGTTCAGCGCCAACGGCGAGTTCTACGCTT TCGGCACCTACAACCAGCGCGATACCGAAGGCGCCAATTACTTCCGTTATCCGGACAGCAGCGCCAACTGGCGCGAGATC TACCCCAACGGCTACCGCCCGATTTCCGAAGGCGAGAATCGCGACCTGCAACTCGTGGCCGGTGCCCGCGGGCAATGGGG CAATTGGGATTACGACGCCAGCGTCAACTACGGCCGCAACGACTTCACCTACCGGCTACGCAACTCGCTCAATGCATCGC TGGGGCCCGGCAGCACCACACGCTTCAAGACCGGCGACTTCGCCTTCGCGCAAACCGTGGGCAATTTCGACCTGACCCGC GTGCTCGACGCCGCCGGCGCTACCCATACCTTCGGTACCGGCGCCGAGTTCCGCCGCGAGCAATACCGCACCCACGCCGG CGACCCTGCCAGCTACGCGGCCGGCCCGTTCACCGATCGCCCCACCGGCTCGCAGGCCGGCGGCGGGCTCACTCCGCAGG ACGAAGCCGACCTGTCGCGCAACGTGGCCAGCGCCTACGCCAACGTCTCCAGCCAGTTCGGCGACAAGTTTTCGACCGAC CTGGCCGGCCGCTACGAGCATTACCAGGATTTCGGCAGCCAGTGGACCGGCAAACTGGCCGCGCGCTACGCGTTCGCACC GGCCTTTGCGCTGCGTGGCGCCATCTCAAACAACGTGCGTGCGCCTTCGCTCAGCCAGATCGGGTATGAAGCCACGTCCA CCGGTTACGACGCCGCCGGCCGTCTGACCCAGGGTCGCCTGCTGTCGGTCAACAACCCCATCGCGCGCGGACTCGGCGCC ACCGATCTGAAGCCGGAAAAGTCGGTCAATTACAGCCTGGGCTTCACCAGCAAGGTGGGCGATCACTTCGACGTGTCGCT GGACTTTTTCCAGATCGATATCGACGACCGCATCGCGCTGTCCGAAGACATCACCGGCGATGCGCTGACCAGCTTCGTGC AGCAGAACTACGGCGTCACCGGCGTGCAGAGCGCCAGCTATTTCCTCAACGCCGCCGACACCCGCACCCGCGGTGCCGAG CTGGTCGCCAACTGGCGCCAGTACGCCTTCGGCGGCGACCTGCTGCTGACCGGCACCTACAGCTACGCCAAGACCGAGCT GGAAAACATCATTGCCACCCCGGCCCAGTTGCTTGCATTGAACCCGGAGTACGTGCTGTTCGGCGTGGAAGAAAGCAACA CGCTCACCGACGCCGCACCGCGCACCCGCGCCTCGCTTGCCGCGAACTGGAGCAACGAGCACTGGAACCTGCAGACACGC GTCAACCGCTACGGCAGCGCCACCCGCGTATTCGATTTCGGTGGCGGCTTCGTGCCGCGCCAGACCTACGGCGCCGAGTG GCAACTGGACCTGGAAGCCGAATACCACCTGGGCACGCAATGGACGCTGGCCATCGGCGGGCAGAACATTCTGGACAACT ACTCGGACCGTTCCATCGACGACATCGCCTACTTCGGCAACCTGCCCTACGACGTGCTCTCGCCGATCGGCAGCAACGGC GCGTATTGGTATGGGCGGGTGCGGTACTCGTTCTGA
Upstream 100 bases:
>100_bases ATTTTTCCATCCGGATGAATGTGGACAATCCGCCCCCTTGCGCCCAGCCCGGCCGGATGCCGACCGCGCGGCGCGTTGCA GTTGCAGGAGAGAGAACAGC
Downstream 100 bases:
>100_bases GCAACGGCGTTGAGCCCCTCTCCCCTCGGGAGAGGGGTTGGGGTGAGGGTACGGGCGAAGCCTCGCGTCATAAGTCACTA CAGGAGGCTTCGCCCTTACC
Product: ferric enterobactin receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 811; Mature: 810
Protein sequence:
>811_residues MTRPTLSVIGMAIAAVLSANAQAQQADAGATTLDTVIVTGTRASDRTVLESTVPVDVLTAEDIRKAGVVNGELGSALQAL LPSFNFPRQSNSGGADHIRAAQLRGLSPDQVLVLVNGKRRHTSALVNTDSKIGKGTTPVDFNSIPINAIKRIEVLRDGAG AQYGSDAIAGVINVILDDNPERGELEASFGAYNTDVAPIDRRVTDGQTSYASAKVGTLLGDDGGFFKVGLELKNREATNR AGFDQIPSFEEQTPANLALRGQRNYVLGDGATKGLNAWLNSKVPFSANGEFYAFGTYNQRDTEGANYFRYPDSSANWREI YPNGYRPISEGENRDLQLVAGARGQWGNWDYDASVNYGRNDFTYRLRNSLNASLGPGSTTRFKTGDFAFAQTVGNFDLTR VLDAAGATHTFGTGAEFRREQYRTHAGDPASYAAGPFTDRPTGSQAGGGLTPQDEADLSRNVASAYANVSSQFGDKFSTD LAGRYEHYQDFGSQWTGKLAARYAFAPAFALRGAISNNVRAPSLSQIGYEATSTGYDAAGRLTQGRLLSVNNPIARGLGA TDLKPEKSVNYSLGFTSKVGDHFDVSLDFFQIDIDDRIALSEDITGDALTSFVQQNYGVTGVQSASYFLNAADTRTRGAE LVANWRQYAFGGDLLLTGTYSYAKTELENIIATPAQLLALNPEYVLFGVEESNTLTDAAPRTRASLAANWSNEHWNLQTR VNRYGSATRVFDFGGGFVPRQTYGAEWQLDLEAEYHLGTQWTLAIGGQNILDNYSDRSIDDIAYFGNLPYDVLSPIGSNG AYWYGRVRYSF
Sequences:
>Translated_811_residues MTRPTLSVIGMAIAAVLSANAQAQQADAGATTLDTVIVTGTRASDRTVLESTVPVDVLTAEDIRKAGVVNGELGSALQAL LPSFNFPRQSNSGGADHIRAAQLRGLSPDQVLVLVNGKRRHTSALVNTDSKIGKGTTPVDFNSIPINAIKRIEVLRDGAG AQYGSDAIAGVINVILDDNPERGELEASFGAYNTDVAPIDRRVTDGQTSYASAKVGTLLGDDGGFFKVGLELKNREATNR AGFDQIPSFEEQTPANLALRGQRNYVLGDGATKGLNAWLNSKVPFSANGEFYAFGTYNQRDTEGANYFRYPDSSANWREI YPNGYRPISEGENRDLQLVAGARGQWGNWDYDASVNYGRNDFTYRLRNSLNASLGPGSTTRFKTGDFAFAQTVGNFDLTR VLDAAGATHTFGTGAEFRREQYRTHAGDPASYAAGPFTDRPTGSQAGGGLTPQDEADLSRNVASAYANVSSQFGDKFSTD LAGRYEHYQDFGSQWTGKLAARYAFAPAFALRGAISNNVRAPSLSQIGYEATSTGYDAAGRLTQGRLLSVNNPIARGLGA TDLKPEKSVNYSLGFTSKVGDHFDVSLDFFQIDIDDRIALSEDITGDALTSFVQQNYGVTGVQSASYFLNAADTRTRGAE LVANWRQYAFGGDLLLTGTYSYAKTELENIIATPAQLLALNPEYVLFGVEESNTLTDAAPRTRASLAANWSNEHWNLQTR VNRYGSATRVFDFGGGFVPRQTYGAEWQLDLEAEYHLGTQWTLAIGGQNILDNYSDRSIDDIAYFGNLPYDVLSPIGSNG AYWYGRVRYSF >Mature_810_residues TRPTLSVIGMAIAAVLSANAQAQQADAGATTLDTVIVTGTRASDRTVLESTVPVDVLTAEDIRKAGVVNGELGSALQALL PSFNFPRQSNSGGADHIRAAQLRGLSPDQVLVLVNGKRRHTSALVNTDSKIGKGTTPVDFNSIPINAIKRIEVLRDGAGA QYGSDAIAGVINVILDDNPERGELEASFGAYNTDVAPIDRRVTDGQTSYASAKVGTLLGDDGGFFKVGLELKNREATNRA GFDQIPSFEEQTPANLALRGQRNYVLGDGATKGLNAWLNSKVPFSANGEFYAFGTYNQRDTEGANYFRYPDSSANWREIY PNGYRPISEGENRDLQLVAGARGQWGNWDYDASVNYGRNDFTYRLRNSLNASLGPGSTTRFKTGDFAFAQTVGNFDLTRV LDAAGATHTFGTGAEFRREQYRTHAGDPASYAAGPFTDRPTGSQAGGGLTPQDEADLSRNVASAYANVSSQFGDKFSTDL AGRYEHYQDFGSQWTGKLAARYAFAPAFALRGAISNNVRAPSLSQIGYEATSTGYDAAGRLTQGRLLSVNNPIARGLGAT DLKPEKSVNYSLGFTSKVGDHFDVSLDFFQIDIDDRIALSEDITGDALTSFVQQNYGVTGVQSASYFLNAADTRTRGAEL VANWRQYAFGGDLLLTGTYSYAKTELENIIATPAQLLALNPEYVLFGVEESNTLTDAAPRTRASLAANWSNEHWNLQTRV NRYGSATRVFDFGGGFVPRQTYGAEWQLDLEAEYHLGTQWTLAIGGQNILDNYSDRSIDDIAYFGNLPYDVLSPIGSNGA YWYGRVRYSF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=167, Percent_Identity=29.3413173652695, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1786798, Length=173, Percent_Identity=32.9479768786127, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1790405, Length=183, Percent_Identity=30.0546448087432, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87745; Mature: 87614
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.1 %Met (Mature Protein) 0.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPTLSVIGMAIAAVLSANAQAQQADAGATTLDTVIVTGTRASDRTVLESTVPVDVLTA CCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEEECCCCCCCEEECCCCCEEEEEH EDIRKAGVVNGELGSALQALLPSFNFPRQSNSGGADHIRAAQLRGLSPDQVLVLVNGKRR HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCC HTSALVNTDSKIGKGTTPVDFNSIPINAIKRIEVLRDGAGAQYGSDAIAGVINVILDDNP CCHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEECCCC ERGELEASFGAYNTDVAPIDRRVTDGQTSYASAKVGTLLGDDGGFFKVGLELKNREATNR CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEECCCCCEEEEEEEEECCCCCCC AGFDQIPSFEEQTPANLALRGQRNYVLGDGATKGLNAWLNSKVPFSANGEFYAFGTYNQR CCCCCCCCCCCCCCCCEEEECCCCEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCC DTEGANYFRYPDSSANWREIYPNGYRPISEGENRDLQLVAGARGQWGNWDYDASVNYGRN CCCCCCEEECCCCCCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC DFTYRLRNSLNASLGPGSTTRFKTGDFAFAQTVGNFDLTRVLDAAGATHTFGTGAEFRRE CCEEHHHHCCCCCCCCCCCCEEECCCCCEEHHHCCCHHHHHHHHCCCCCCCCCCHHHHHH QYRTHAGDPASYAAGPFTDRPTGSQAGGGLTPQDEADLSRNVASAYANVSSQFGDKFSTD HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH LAGRYEHYQDFGSQWTGKLAARYAFAPAFALRGAISNNVRAPSLSQIGYEATSTGYDAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCC RLTQGRLLSVNNPIARGLGATDLKPEKSVNYSLGFTSKVGDHFDVSLDFFQIDIDDRIAL CCCCCEEEECCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCCCEEE SEDITGDALTSFVQQNYGVTGVQSASYFLNAADTRTRGAELVANWRQYAFGGDLLLTGTY CCCCCHHHHHHHHHHCCCCCEECCHHHEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECC SYAKTELENIIATPAQLLALNPEYVLFGVEESNTLTDAAPRTRASLAANWSNEHWNLQTR HHHHHHHHHHHCCCHHHEEECCCEEEEEECCCCCCCCCCCCHHHHEEECCCCCCEEEHHH VNRYGSATRVFDFGGGFVPRQTYGAEWQLDLEAEYHLGTQWTLAIGGQNILDNYSDRSID HHHCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCHHHCCCCCCCHH DIAYFGNLPYDVLSPIGSNGAYWYGRVRYSF HHHHHCCCCHHHHCCCCCCCCEEEEEEEECC >Mature Secondary Structure TRPTLSVIGMAIAAVLSANAQAQQADAGATTLDTVIVTGTRASDRTVLESTVPVDVLTA CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEEECCCCCCCEEECCCCCEEEEEH EDIRKAGVVNGELGSALQALLPSFNFPRQSNSGGADHIRAAQLRGLSPDQVLVLVNGKRR HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCC HTSALVNTDSKIGKGTTPVDFNSIPINAIKRIEVLRDGAGAQYGSDAIAGVINVILDDNP CCHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEECCCC ERGELEASFGAYNTDVAPIDRRVTDGQTSYASAKVGTLLGDDGGFFKVGLELKNREATNR CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEECCCCCEEEEEEEEECCCCCCC AGFDQIPSFEEQTPANLALRGQRNYVLGDGATKGLNAWLNSKVPFSANGEFYAFGTYNQR CCCCCCCCCCCCCCCCEEEECCCCEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCCC DTEGANYFRYPDSSANWREIYPNGYRPISEGENRDLQLVAGARGQWGNWDYDASVNYGRN CCCCCCEEECCCCCCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC DFTYRLRNSLNASLGPGSTTRFKTGDFAFAQTVGNFDLTRVLDAAGATHTFGTGAEFRRE CCEEHHHHCCCCCCCCCCCCEEECCCCCEEHHHCCCHHHHHHHHCCCCCCCCCCHHHHHH QYRTHAGDPASYAAGPFTDRPTGSQAGGGLTPQDEADLSRNVASAYANVSSQFGDKFSTD HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH LAGRYEHYQDFGSQWTGKLAARYAFAPAFALRGAISNNVRAPSLSQIGYEATSTGYDAAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCC RLTQGRLLSVNNPIARGLGATDLKPEKSVNYSLGFTSKVGDHFDVSLDFFQIDIDDRIAL CCCCCEEEECCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCCCEEE SEDITGDALTSFVQQNYGVTGVQSASYFLNAADTRTRGAELVANWRQYAFGGDLLLTGTY CCCCCHHHHHHHHHHCCCCCEECCHHHEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECC SYAKTELENIIATPAQLLALNPEYVLFGVEESNTLTDAAPRTRASLAANWSNEHWNLQTR HHHHHHHHHHHCCCHHHEEECCCEEEEEECCCCCCCCCCCCHHHHEEECCCCCCEEEHHH VNRYGSATRVFDFGGGFVPRQTYGAEWQLDLEAEYHLGTQWTLAIGGQNILDNYSDRSID HHHCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCHHHCCCCCCCHH DIAYFGNLPYDVLSPIGSNGAYWYGRVRYSF HHHHHCCCCHHHHCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA