| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is fyuA [H]
Identifier: 21243927
GI number: 21243927
Start: 3766774
End: 3769029
Strand: Reverse
Name: fyuA [H]
Synonym: XAC3201
Alternate gene names: 21243927
Gene position: 3769029-3766774 (Counterclockwise)
Preceding gene: 21243930
Following gene: 21243926
Centisome position: 72.82
GC content: 66.71
Gene sequence:
>2256_bases ATGATTGCGCGACACCGGAGCCCGGCGGGCATCGTTTCTGCTTCCCGATGGTGGGGGACCCCGCAGTTGCTGGCATGGAG CCTGGCATGCGCCTGCATGCCGGCCGTTGCCGACGAAGCGGGCGATGCCGACGCAGCACCGGAGCGCACGGCGCAGACCC TGGGGGCGGTGACCGTCACCGCCACGCGCCGCGAAACCACCTTGCAACAAGTGCCGGTGGCGGTGTCCGTGGTGCAGGGC GAAACGCTGGAGCGCGAGAACCGCAACAACGTGGCCGACCTGCCGGCACTGGTGCCCAGCCTGACCTTCCGCACCGGTGC TTCCAACAAGGACACCTCGTTGTTCCTGCGCGGCGTGGGCACCATTTCGACCTCGCCGGGCGTGGAGCCCAGCGTGGCCA CCGTGATCGATGGCGTGGTGCTGGGCCGGCCGGGCCAGGCCACGCTGGATCTGCTCGATGTCGAGCGCATCGAAGTACTG CGCGGGCCGCAGGGCACCTTGTTCGGCAAGAACGCTTCCGCCGGCGTACTCAATATCGTCAGCAAGCCGGCGCCGGAGGT ATTCGGCGGGTATGTGGATTATTCGCACTTCGGTGGCGGCGACGAAGACCGCCTGCGTGCCAGCGTCGGCGGCACGCTGG TGCCGGAGCTGCTCAAGGCCAGCGTGTCGGCATTGTGGGCCGAGTACGGCGGCAACGTGCGCAATGTGGCCGACGGCCAG ACCGTCAACGGCTACCGCCGCGCCGGCGCGCGCTTGCGGCTGGACCTGAGCCCGAACCCTGGCTTGAACGCGACGCTGCT GGCCGACTACCTGCAATCGCACAGCGACGCGCCCAGCGGTGTGGTGGTGGACAGCACGCGTGCCGACTTCGCCGCGGCGC TGGCACCGGTCATCGCCAGGGACGACAACCGGCAGATCAACAGCGATTACCGCACGCATCTGGAAGACACCAACAAGGGC GCCTCGCTGCAGCTGGATCAGCAGCTCGGCGATGCAGTGCTGACATCCATCAGCGCCTGGCGGCAGTGGGACAACACCCA ATTCCAGGATGGCGACCGCACCGCGCAACGCAGCGCAACGTTTCCGTCCTCGCACGACCGTGGCGATCTGGGGTATACGC AATACTCGCAGGAAGTGCGCATCGAGACGCCGCGCGACCGTGCGGTGGAAGCGGTGGCCGGCCTGTACTACCTGCACGCG CGCAGCGACGAAACCTACCAGCGCACGGTGACCTCGCCGACCGCAAGCAACGTGGGCGTGGCCGATTACGATACCCGGGC CGAAACCTATGCAGCGTTCGGCGAGGCCACCTGGCATTGGCGTCCGGATCTGCGCGCCTTGCTCGGCGCGCGCTTCACCC GCGACACGCTCGACTATCAACACCAGCGCGTGTCCACCTCTGCAAGCGCGGTCACCGGTATCCAGCCCGCCACCGCCAGC AGCGGGAGCACCGCAGAAAACGGCGTCTCCGGCCGTGCGGGGCTGCAGTACGACGTCGATGCGCGAACCACCGGCTACCT CACGTATTCGCGCGGCTACAAGGGCCCGGCCTACAACGTGTTCTTCAACATGCAGCCGCGCGATACGCCGGCGCTGAAGC CGGAAACCTCCAACGCGTGGGAGCTGGGCCTGAAGGCGCGCGCCCTGGACGATCGCCTCAGTGCGAACGTGGCGTTGTTC CATACCGAATACGCCAACTACCAGGCCAACTTCTTCGACACCGTGGCCGGGCAGGTGGTGACGCGCCTGATCAACGCCGG GCAGGTGCGCACGCAGGGTGTGGAGCTGGATCTGGAGTATCGGCCCACCGAGCGGCTTAGCCTGGCGGCGTCGCTGGCCT ATACGCAGGCACGCATCCAGCGCTTCGCCTGCCCGGCAGCTGCGGCAGCCAATTGCAACGTGGATGGCAAGCCGTTGCCG TTCTCGCCGGACTGGAAGGGCAACCTGCGCGCGGCCTATCGCGTGCCGTTGCGCGGCAGTCTGGCGCTGGAATTCAACGG CGATGTGAGCTGGCAGGACAGCGTGCAGTACGACCTCAGCCAGACCGCACAAACCATTCAGGGCCCTTACGCAATCTGGA ATGCCAGCATTGCGTTGGCCGACGATCTGCATGGCTGGCGGGTGGCGGTGCTGGGTCGCAATCTCGGCGACCGCGCGTAT GCACCGTTGCTGGCCAATGCGACCGGCAACGTCTATCGATTGGTGCCACGCGACGATCAGCGTTATGTCGGGCTGCAAGT GCATAAGGATTTTTGA
Upstream 100 bases:
>100_bases GCTTGGCTGGCGCTACGTAAACCACGCGGCGCGGCGACCCTACGGCGCATGCCGGCCGCAGCAACGCTGCGCACCAACCA GCCCATACAAAAGGACGTCA
Downstream 100 bases:
>100_bases CGAATGGGTGTGATGTTTCTTGATGTTGCTGTGAGCAGTGACATGGCTGCCGTCCGCGGTGCGCTGCGATGAGCGCGCCA CGTCAGCTGTCGCTGGGCGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MIARHRSPAGIVSASRWWGTPQLLAWSLACACMPAVADEAGDADAAPERTAQTLGAVTVTATRRETTLQQVPVAVSVVQG ETLERENRNNVADLPALVPSLTFRTGASNKDTSLFLRGVGTISTSPGVEPSVATVIDGVVLGRPGQATLDLLDVERIEVL RGPQGTLFGKNASAGVLNIVSKPAPEVFGGYVDYSHFGGGDEDRLRASVGGTLVPELLKASVSALWAEYGGNVRNVADGQ TVNGYRRAGARLRLDLSPNPGLNATLLADYLQSHSDAPSGVVVDSTRADFAAALAPVIARDDNRQINSDYRTHLEDTNKG ASLQLDQQLGDAVLTSISAWRQWDNTQFQDGDRTAQRSATFPSSHDRGDLGYTQYSQEVRIETPRDRAVEAVAGLYYLHA RSDETYQRTVTSPTASNVGVADYDTRAETYAAFGEATWHWRPDLRALLGARFTRDTLDYQHQRVSTSASAVTGIQPATAS SGSTAENGVSGRAGLQYDVDARTTGYLTYSRGYKGPAYNVFFNMQPRDTPALKPETSNAWELGLKARALDDRLSANVALF HTEYANYQANFFDTVAGQVVTRLINAGQVRTQGVELDLEYRPTERLSLAASLAYTQARIQRFACPAAAAANCNVDGKPLP FSPDWKGNLRAAYRVPLRGSLALEFNGDVSWQDSVQYDLSQTAQTIQGPYAIWNASIALADDLHGWRVAVLGRNLGDRAY APLLANATGNVYRLVPRDDQRYVGLQVHKDF
Sequences:
>Translated_751_residues MIARHRSPAGIVSASRWWGTPQLLAWSLACACMPAVADEAGDADAAPERTAQTLGAVTVTATRRETTLQQVPVAVSVVQG ETLERENRNNVADLPALVPSLTFRTGASNKDTSLFLRGVGTISTSPGVEPSVATVIDGVVLGRPGQATLDLLDVERIEVL RGPQGTLFGKNASAGVLNIVSKPAPEVFGGYVDYSHFGGGDEDRLRASVGGTLVPELLKASVSALWAEYGGNVRNVADGQ TVNGYRRAGARLRLDLSPNPGLNATLLADYLQSHSDAPSGVVVDSTRADFAAALAPVIARDDNRQINSDYRTHLEDTNKG ASLQLDQQLGDAVLTSISAWRQWDNTQFQDGDRTAQRSATFPSSHDRGDLGYTQYSQEVRIETPRDRAVEAVAGLYYLHA RSDETYQRTVTSPTASNVGVADYDTRAETYAAFGEATWHWRPDLRALLGARFTRDTLDYQHQRVSTSASAVTGIQPATAS SGSTAENGVSGRAGLQYDVDARTTGYLTYSRGYKGPAYNVFFNMQPRDTPALKPETSNAWELGLKARALDDRLSANVALF HTEYANYQANFFDTVAGQVVTRLINAGQVRTQGVELDLEYRPTERLSLAASLAYTQARIQRFACPAAAAANCNVDGKPLP FSPDWKGNLRAAYRVPLRGSLALEFNGDVSWQDSVQYDLSQTAQTIQGPYAIWNASIALADDLHGWRVAVLGRNLGDRAY APLLANATGNVYRLVPRDDQRYVGLQVHKDF >Mature_751_residues MIARHRSPAGIVSASRWWGTPQLLAWSLACACMPAVADEAGDADAAPERTAQTLGAVTVTATRRETTLQQVPVAVSVVQG ETLERENRNNVADLPALVPSLTFRTGASNKDTSLFLRGVGTISTSPGVEPSVATVIDGVVLGRPGQATLDLLDVERIEVL RGPQGTLFGKNASAGVLNIVSKPAPEVFGGYVDYSHFGGGDEDRLRASVGGTLVPELLKASVSALWAEYGGNVRNVADGQ TVNGYRRAGARLRLDLSPNPGLNATLLADYLQSHSDAPSGVVVDSTRADFAAALAPVIARDDNRQINSDYRTHLEDTNKG ASLQLDQQLGDAVLTSISAWRQWDNTQFQDGDRTAQRSATFPSSHDRGDLGYTQYSQEVRIETPRDRAVEAVAGLYYLHA RSDETYQRTVTSPTASNVGVADYDTRAETYAAFGEATWHWRPDLRALLGARFTRDTLDYQHQRVSTSASAVTGIQPATAS SGSTAENGVSGRAGLQYDVDARTTGYLTYSRGYKGPAYNVFFNMQPRDTPALKPETSNAWELGLKARALDDRLSANVALF HTEYANYQANFFDTVAGQVVTRLINAGQVRTQGVELDLEYRPTERLSLAASLAYTQARIQRFACPAAAAANCNVDGKPLP FSPDWKGNLRAAYRVPLRGSLALEFNGDVSWQDSVQYDLSQTAQTIQGPYAIWNASIALADDLHGWRVAVLGRNLGDRAY APLLANATGNVYRLVPRDDQRYVGLQVHKDF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 81236; Mature: 81236
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIARHRSPAGIVSASRWWGTPQLLAWSLACACMPAVADEAGDADAAPERTAQTLGAVTVT CCCCCCCCCCCEECHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCEEEEE ATRRETTLQQVPVAVSVVQGETLERENRNNVADLPALVPSLTFRTGASNKDTSLFLRGVG ECCHHHHHHHCCEEEEEECCCHHCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEEEECC TISTSPGVEPSVATVIDGVVLGRPGQATLDLLDVERIEVLRGPQGTLFGKNASAGVLNIV CCCCCCCCCCCHHHHHHHHEECCCCCCEEEEHHHHHHHHHCCCCCCEECCCCCCCHHHHH SKPAPEVFGGYVDYSHFGGGDEDRLRASVGGTLVPELLKASVSALWAEYGGNVRNVADGQ CCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TVNGYRRAGARLRLDLSPNPGLNATLLADYLQSHSDAPSGVVVDSTRADFAAALAPVIAR CCCHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCC DDNRQINSDYRTHLEDTNKGASLQLDQQLGDAVLTSISAWRQWDNTQFQDGDRTAQRSAT CCCCCCCCHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC FPSSHDRGDLGYTQYSQEVRIETPRDRAVEAVAGLYYLHARSDETYQRTVTSPTASNVGV CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHEEEEEECCCCHHHHEECCCCCCCCCC ADYDTRAETYAAFGEATWHWRPDLRALLGARFTRDTLDYQHQRVSTSASAVTGIQPATAS CCCCCCHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC SGSTAENGVSGRAGLQYDVDARTTGYLTYSRGYKGPAYNVFFNMQPRDTPALKPETSNAW CCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCHH ELGLKARALDDRLSANVALFHTEYANYQANFFDTVAGQVVTRLINAGQVRTQGVELDLEY HHCEEHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEEE RPTERLSLAASLAYTQARIQRFACPAAAAANCNVDGKPLPFSPDWKGNLRAAYRVPLRGS CCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE LALEFNGDVSWQDSVQYDLSQTAQTIQGPYAIWNASIALADDLHGWRVAVLGRNLGDRAY EEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECEEEEECCCCCEEEEEECCCCCCHHH APLLANATGNVYRLVPRDDQRYVGLQVHKDF CCEEECCCCCEEEECCCCCCEEEEEEEECCC >Mature Secondary Structure MIARHRSPAGIVSASRWWGTPQLLAWSLACACMPAVADEAGDADAAPERTAQTLGAVTVT CCCCCCCCCCCEECHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCEEEEE ATRRETTLQQVPVAVSVVQGETLERENRNNVADLPALVPSLTFRTGASNKDTSLFLRGVG ECCHHHHHHHCCEEEEEECCCHHCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEEEECC TISTSPGVEPSVATVIDGVVLGRPGQATLDLLDVERIEVLRGPQGTLFGKNASAGVLNIV CCCCCCCCCCCHHHHHHHHEECCCCCCEEEEHHHHHHHHHCCCCCCEECCCCCCCHHHHH SKPAPEVFGGYVDYSHFGGGDEDRLRASVGGTLVPELLKASVSALWAEYGGNVRNVADGQ CCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TVNGYRRAGARLRLDLSPNPGLNATLLADYLQSHSDAPSGVVVDSTRADFAAALAPVIAR CCCHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCC DDNRQINSDYRTHLEDTNKGASLQLDQQLGDAVLTSISAWRQWDNTQFQDGDRTAQRSAT CCCCCCCCHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC FPSSHDRGDLGYTQYSQEVRIETPRDRAVEAVAGLYYLHARSDETYQRTVTSPTASNVGV CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHEEEEEECCCCHHHHEECCCCCCCCCC ADYDTRAETYAAFGEATWHWRPDLRALLGARFTRDTLDYQHQRVSTSASAVTGIQPATAS CCCCCCHHHHHHHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC SGSTAENGVSGRAGLQYDVDARTTGYLTYSRGYKGPAYNVFFNMQPRDTPALKPETSNAW CCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCHH ELGLKARALDDRLSANVALFHTEYANYQANFFDTVAGQVVTRLINAGQVRTQGVELDLEY HHCEEHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEEE RPTERLSLAASLAYTQARIQRFACPAAAAANCNVDGKPLPFSPDWKGNLRAAYRVPLRGS CCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE LALEFNGDVSWQDSVQYDLSQTAQTIQGPYAIWNASIALADDLHGWRVAVLGRNLGDRAY EEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECEEEEECCCCCEEEEEECCCCCCHHH APLLANATGNVYRLVPRDDQRYVGLQVHKDF CCEEECCCCCEEEECCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA