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The map label for this gene is ycaD [C]

Identifier: 21243883

GI number: 21243883

Start: 3707553

End: 3708797

Strand: Direct

Name: ycaD [C]

Synonym: XAC3157

Alternate gene names: 21243883

Gene position: 3707553-3708797 (Clockwise)

Preceding gene: 21243881

Following gene: 21243884

Centisome position: 71.64

GC content: 66.02

Gene sequence:

>1245_bases
ATGTTGCGGTTGACTGCCTTATTGCTTGGCGTTGCCCTGCTGCTCACCGGTAGCGGGTTGCTCGGCACCCTGCTCGCCGT
GCGCGGCGATCAGGCCGGCTTCGATGCGCGGGCGTTGGGGTTGATCATGTCCGGCTACTTCGCCGGCTTCTTTCTCGGCA
CCTTCTTTGCACCACCGCTGATTCGCCGCATCGGCCATATCCGCGCATTTGCGTTTTATGCGGCGCTGGCAGCCATTGCG
GTGTTGCTGCATCCGATCTGGTTGAACGCCTGGGGCTGGGGCCTGCTGCGCCTGGTGACCGGCGCGGCGCTGGTCGGCCT
GTATACGGTGATCGAAAGCTGGCTCAACGCCGAGCCGGACGCGCGCCGGCGCAGTCGGGTGTTTTCGGTCTACATGGCGA
TCAATCTGTCGGCGCTGGCACTGGGCCAGGTCCTGCTCACCATCGGCGATGCGGGCGCGCCGGCGATGTTCACGCTGACG
GCGATCCTGATCTGTGCGGCAGTGATGCCGGTGATGACCACGCGCCTGATTCCGCCCGAAGTGCCGCATGTCTCGCGCCT
GCGACTGAAAACGCTGTACGCATTGGCGCCGGTGGCAACCATCGGCGCGGGACTGTCGGGCCTGGCGATGGGTGCGTTCT
GGGGCTTGTTGCCGGTCTACGCCAACCGCATCGGACTGGATGCCGACGGCGTGGCGATGTTCATGCTCACCGCCATCGTG
GGCGGTGCGGTGCTGCAGTGGCCGATCGGGCGCATCAGCGATGGGCATGACCGCCGCATCGGCCTGGTGACCGTGAGCAC
GCTGGCCGCCGCCATCGCGATCGCTGCCGCATTGCCGATGGTGCAGACGCAGACCACCGTGCTGTTCGTGCTGTTCTTCG
TCTATGGCGGGTTGGCGTTTTCGCTGTACCCGTTCGCGGTGGCGCACATGCTCGATTACCTGCCGCGCGAAGACCTGCTT
TCCGGCAGCAGCAGCTTGTTGCTGGTGCATGGCGTAGGTGCGGCGATTGGCCCTGCACTGGCCGGCGGCGCAATGCAGAA
ATTCGGCCCGGCCGCGTTGCCGGTGTACTTCGCGGTGATGTTGTTGGCACTGGCGGGCTTCACGTTGTCGCGGCTGCTGC
GCTTCACCCGCCGCCGCACCCATCCGATCGCCTTCCGCCCAATGCTGCGCACCACCCCGTCAGCACTGGAGTTGATGCCG
GAAACACAGCAGGCCGAAGCACCGCCGCACGCCAAGGGCGGCTGA

Upstream 100 bases:

>100_bases
AGCGCTGTAGAGGCAGGTCGTTTCGATCAAGCCATACGATCCGGGCTGTTACACTCGAACTCGTGATCGACGCGCCTTTC
CCCCCACGAGGGCCGCATCC

Downstream 100 bases:

>100_bases
TACAGCTATGTCGCTGTCGTTAGTCGCTGCGCTGCTGGTCATGTGATCTGCGGCGTTGCTGCAATGGGGCCCCTTGCCCG
CCCACCATTGCGGCGGGGGC

Product: transmembrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MLRLTALLLGVALLLTGSGLLGTLLAVRGDQAGFDARALGLIMSGYFAGFFLGTFFAPPLIRRIGHIRAFAFYAALAAIA
VLLHPIWLNAWGWGLLRLVTGAALVGLYTVIESWLNAEPDARRRSRVFSVYMAINLSALALGQVLLTIGDAGAPAMFTLT
AILICAAVMPVMTTRLIPPEVPHVSRLRLKTLYALAPVATIGAGLSGLAMGAFWGLLPVYANRIGLDADGVAMFMLTAIV
GGAVLQWPIGRISDGHDRRIGLVTVSTLAAAIAIAAALPMVQTQTTVLFVLFFVYGGLAFSLYPFAVAHMLDYLPREDLL
SGSSSLLLVHGVGAAIGPALAGGAMQKFGPAALPVYFAVMLLALAGFTLSRLLRFTRRRTHPIAFRPMLRTTPSALELMP
ETQQAEAPPHAKGG

Sequences:

>Translated_414_residues
MLRLTALLLGVALLLTGSGLLGTLLAVRGDQAGFDARALGLIMSGYFAGFFLGTFFAPPLIRRIGHIRAFAFYAALAAIA
VLLHPIWLNAWGWGLLRLVTGAALVGLYTVIESWLNAEPDARRRSRVFSVYMAINLSALALGQVLLTIGDAGAPAMFTLT
AILICAAVMPVMTTRLIPPEVPHVSRLRLKTLYALAPVATIGAGLSGLAMGAFWGLLPVYANRIGLDADGVAMFMLTAIV
GGAVLQWPIGRISDGHDRRIGLVTVSTLAAAIAIAAALPMVQTQTTVLFVLFFVYGGLAFSLYPFAVAHMLDYLPREDLL
SGSSSLLLVHGVGAAIGPALAGGAMQKFGPAALPVYFAVMLLALAGFTLSRLLRFTRRRTHPIAFRPMLRTTPSALELMP
ETQQAEAPPHAKGG
>Mature_414_residues
MLRLTALLLGVALLLTGSGLLGTLLAVRGDQAGFDARALGLIMSGYFAGFFLGTFFAPPLIRRIGHIRAFAFYAALAAIA
VLLHPIWLNAWGWGLLRLVTGAALVGLYTVIESWLNAEPDARRRSRVFSVYMAINLSALALGQVLLTIGDAGAPAMFTLT
AILICAAVMPVMTTRLIPPEVPHVSRLRLKTLYALAPVATIGAGLSGLAMGAFWGLLPVYANRIGLDADGVAMFMLTAIV
GGAVLQWPIGRISDGHDRRIGLVTVSTLAAAIAIAAALPMVQTQTTVLFVLFFVYGGLAFSLYPFAVAHMLDYLPREDLL
SGSSSLLLVHGVGAAIGPALAGGAMQKFGPAALPVYFAVMLLALAGFTLSRLLRFTRRRTHPIAFRPMLRTTPSALELMP
ETQQAEAPPHAKGG

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=363, Percent_Identity=26.4462809917355, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43796; Mature: 43796

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCHHHHHCCCCHHCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCHHHHHCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA