| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is ptr [H]
Identifier: 21243728
GI number: 21243728
Start: 3512473
End: 3513846
Strand: Direct
Name: ptr [H]
Synonym: XAC3001
Alternate gene names: 21243728
Gene position: 3512473-3513846 (Clockwise)
Preceding gene: 21243721
Following gene: 21243737
Centisome position: 67.87
GC content: 68.85
Gene sequence:
>1374_bases ATGCCCACCGAGAGACCGATCACTGCCGCAGCGCTGTCCATCGAAGCGCAGCCCACCTCCATCCTGGCCGCGCCTTACCG CGCGGCGACGCTGGGCATGGTGGCGCTGGTGTCGCTCAATGCGTTCGAGTCGCTGGCGGTTGCCGCCGCCATGCCGACGG TGGCGCGCGAGTTGAACGGGCTGCCGCTGTATGCGTTGGCGTTCGGCGGCGCGCTGGCCACCAGCGTGATTGGGATGACG GCGGCCGGGCGCTGGAGCGACCGTCGCGGTCCTGGCGGTGCGTTGGCTGCCGGCCTGTTGTGCTTTGTGGTCGGCCTGCT GGTCGCCGGCCTGGCACCGAGCATGCCGATGTTGATCGTCGGGCGCCTGCTGCAGGGCCTGGGGGCCGGCGCCTATTCGG TGGCCTTGTACGTCATCGTCGGGCGGCTGTACCCCGAGGTCTTGCGCCCGCGCGTGTTCGCCGCGTTTTCGGGCGGCTGG GTGGTGCCATCGTTGATCGGGCCGGGCATCAGCGGATTGATCGTGCAGCACCTGGGCTGGCGCTGGGTATTTTTGTCGGT GCCACTGTTGGCGATTCCGGCTGGATTACTGCTGTGGCCAGCGCTGCGCGGGCAGACCTGGACACGCGACAGTTCCGACG CGCCAACCGCTTCGATGGGCTGGGCTATCGGAGCGGCGGTGGGCGTGCTTGGCGTGTATCTGGGCGGGCAACTGCACGGC ATGCTGGCACCGGGCGCCATGCTGCCGGCCTTGTTGCTCGCCGCGTATTGCGCCTGGCGCCTGCTACCGGCTGGCACGTT GCGGCTTGCGCGCGGGTTGCCCAGCGTGATCGCGCTGCGTGGCATCGCTGCGGCCGCCTTCTTCGGCTTTGAAGCCTTTT TGCCGCTACTGCTGTCGCGCGAACGCGGACTTTCGCCGCTGCTGGCCGCACGGGCACTGAGCGTGGGTGCGTTGGGCTGG TTCGGTGGCTCGTGGTACCAGGGCCACAGCCGCGCCGGTTGGTCGCGCCCTCGCCTGCTCAAGAGCGGCGCGCTGTCGAT GACACTGGGCATTGCGATCAGCTCAGGTGCGGTGTGGCCGGCGATTCCTGTGACGTTGGCAATTGCCGGCTGGGCGCTGA CCGGCCTGGGCATGGGCCTGCTGTATCCCAGCCTGTCGGTGGTACTGCTGTCGCTGTCGCCACCGGCGCAGCAAGGCGCC AACAGCTCTGCCTTGCAACTGAGCGAAGCCATCGCGGTGGCGGCCACCTTGGCGTTAGCGGGCGCATTGTTCGCTGCGCT GCTGACATCGGCCACGCGCGCCGCCTACCTGAGCGTGTTCGTGTTGGCGTGGTTGCTGGCGGTGGCGAGCCTTTTTGTGG CGCGGCGGGTGTGA
Upstream 100 bases:
>100_bases TTGCCTTGACCTCAACTTAGGTTGAGGCAGGATGCTGCGCGGCCATCACGGGTGCAAGTACCGGTCGCGCCTCTACACAC GTTTGGTTCCTGGATGTTCG
Downstream 100 bases:
>100_bases CTTCGTCCGCGTGAACGCGGGCATCGACGTGACACCGCACCGCGATTGCCGAGGCAACATGGCTGGTCGATGGCAGCACG CGAATGACATGCATGGCCTA
Product: MFS transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MPTERPITAAALSIEAQPTSILAAPYRAATLGMVALVSLNAFESLAVAAAMPTVARELNGLPLYALAFGGALATSVIGMT AAGRWSDRRGPGGALAAGLLCFVVGLLVAGLAPSMPMLIVGRLLQGLGAGAYSVALYVIVGRLYPEVLRPRVFAAFSGGW VVPSLIGPGISGLIVQHLGWRWVFLSVPLLAIPAGLLLWPALRGQTWTRDSSDAPTASMGWAIGAAVGVLGVYLGGQLHG MLAPGAMLPALLLAAYCAWRLLPAGTLRLARGLPSVIALRGIAAAAFFGFEAFLPLLLSRERGLSPLLAARALSVGALGW FGGSWYQGHSRAGWSRPRLLKSGALSMTLGIAISSGAVWPAIPVTLAIAGWALTGLGMGLLYPSLSVVLLSLSPPAQQGA NSSALQLSEAIAVAATLALAGALFAALLTSATRAAYLSVFVLAWLLAVASLFVARRV
Sequences:
>Translated_457_residues MPTERPITAAALSIEAQPTSILAAPYRAATLGMVALVSLNAFESLAVAAAMPTVARELNGLPLYALAFGGALATSVIGMT AAGRWSDRRGPGGALAAGLLCFVVGLLVAGLAPSMPMLIVGRLLQGLGAGAYSVALYVIVGRLYPEVLRPRVFAAFSGGW VVPSLIGPGISGLIVQHLGWRWVFLSVPLLAIPAGLLLWPALRGQTWTRDSSDAPTASMGWAIGAAVGVLGVYLGGQLHG MLAPGAMLPALLLAAYCAWRLLPAGTLRLARGLPSVIALRGIAAAAFFGFEAFLPLLLSRERGLSPLLAARALSVGALGW FGGSWYQGHSRAGWSRPRLLKSGALSMTLGIAISSGAVWPAIPVTLAIAGWALTGLGMGLLYPSLSVVLLSLSPPAQQGA NSSALQLSEAIAVAATLALAGALFAALLTSATRAAYLSVFVLAWLLAVASLFVARRV >Mature_456_residues PTERPITAAALSIEAQPTSILAAPYRAATLGMVALVSLNAFESLAVAAAMPTVARELNGLPLYALAFGGALATSVIGMTA AGRWSDRRGPGGALAAGLLCFVVGLLVAGLAPSMPMLIVGRLLQGLGAGAYSVALYVIVGRLYPEVLRPRVFAAFSGGWV VPSLIGPGISGLIVQHLGWRWVFLSVPLLAIPAGLLLWPALRGQTWTRDSSDAPTASMGWAIGAAVGVLGVYLGGQLHGM LAPGAMLPALLLAAYCAWRLLPAGTLRLARGLPSVIALRGIAAAAFFGFEAFLPLLLSRERGLSPLLAARALSVGALGWF GGSWYQGHSRAGWSRPRLLKSGALSMTLGIAISSGAVWPAIPVTLAIAGWALTGLGMGLLYPSLSVVLLSLSPPAQQGAN SSALQLSEAIAVAATLALAGALFAALLTSATRAAYLSVFVLAWLLAVASLFVARRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322958, Length=122, Percent_Identity=36.0655737704918, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 46792; Mature: 46661
Theoretical pI: Translated: 11.53; Mature: 11.53
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTERPITAAALSIEAQPTSILAAPYRAATLGMVALVSLNAFESLAVAAAMPTVARELNG CCCCCCCCHHEEEECCCCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LPLYALAFGGALATSVIGMTAAGRWSDRRGPGGALAAGLLCFVVGLLVAGLAPSMPMLIV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH GRLLQGLGAGAYSVALYVIVGRLYPEVLRPRVFAAFSGGWVVPSLIGPGISGLIVQHLGW HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCCCEEHHHHCCCHHHHHHHHCCC RWVFLSVPLLAIPAGLLLWPALRGQTWTRDSSDAPTASMGWAIGAAVGVLGVYLGGQLHG EEHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH MLAPGAMLPALLLAAYCAWRLLPAGTLRLARGLPSVIALRGIAAAAFFGFEAFLPLLLSR HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ERGLSPLLAARALSVGALGWFGGSWYQGHSRAGWSRPRLLKSGALSMTLGIAISSGAVWP HCCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCH AIPVTLAIAGWALTGLGMGLLYPSLSVVLLSLSPPAQQGANSSALQLSEAIAVAATLALA HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHH GALFAALLTSATRAAYLSVFVLAWLLAVASLFVARRV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PTERPITAAALSIEAQPTSILAAPYRAATLGMVALVSLNAFESLAVAAAMPTVARELNG CCCCCCCHHEEEECCCCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LPLYALAFGGALATSVIGMTAAGRWSDRRGPGGALAAGLLCFVVGLLVAGLAPSMPMLIV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH GRLLQGLGAGAYSVALYVIVGRLYPEVLRPRVFAAFSGGWVVPSLIGPGISGLIVQHLGW HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHEEEECCCCEEHHHHCCCHHHHHHHHCCC RWVFLSVPLLAIPAGLLLWPALRGQTWTRDSSDAPTASMGWAIGAAVGVLGVYLGGQLHG EEHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH MLAPGAMLPALLLAAYCAWRLLPAGTLRLARGLPSVIALRGIAAAAFFGFEAFLPLLLSR HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ERGLSPLLAARALSVGALGWFGGSWYQGHSRAGWSRPRLLKSGALSMTLGIAISSGAVWP HCCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCH AIPVTLAIAGWALTGLGMGLLYPSLSVVLLSLSPPAQQGANSSALQLSEAIAVAATLALA HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHH GALFAALLTSATRAAYLSVFVLAWLLAVASLFVARRV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]