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The map label for this gene is ahyR [H]

Identifier: 21243715

GI number: 21243715

Start: 3493810

End: 3494574

Strand: Reverse

Name: ahyR [H]

Synonym: XAC2988

Alternate gene names: 21243715

Gene position: 3494574-3493810 (Counterclockwise)

Preceding gene: 21243717

Following gene: 21243714

Centisome position: 67.52

GC content: 63.27

Gene sequence:

>765_bases
ATGTTCGACATTCTGGCCAGCCTGGGCCGCGATCTGCAGGCGTTGCGGACGCTCGATAGCTGCCTGGACCGGGTATTTGG
CGATGTCTGTGCGCTCGGTTTCCAGTCGCTGGTTTACGACTACGCGCCGGTGCCCCTGAGTCTGGAGGGGGCGCTGATCA
CGCCGACGGTGTTCATGCAGCGCAATGCGCCGGGCGATATGCAGCATGTGTGGTGCGAGCACGGGTACTACCAACATGAC
CCTGTTCAGCAGCGTGCAACGCGACGTACCACGCCGTTCGTATGGTCGTACCGCACCGACGGCCATTGCCCGGGTGTGGA
ATATGTGGGCGGTCAGCACCGGCAAGTGACCCGGTATCTATGCGATAGCGGCATGGGCACCGGTGTCACCGTGCCGCTGC
ATTTGCCTGGTGGCGCATTCGCCACCTTCAGCGGCGCAATCGATGCCGCGGCGGCACAAGCGCCGCGTTTGGCCGAAGCG
CAGTTGCTGCCCTTCCTGTTGCTGGCGCATGCCTTCCAGTCGCGTGCGCAGGAGTTGCTGGATCCGCAGGAACGCCGCTG
CCACCACATCGCGCTGACCCGTCGCGAGCGCGAATGCCTGCAATATTCGGCCAAAGGCCTGACGTCCAAACGGATCGCCG
CGGCACTTAACCGTTCAACCGCCACGGTAAACCTGCATCTGAATTCAGCCGCCCGCAAGCTGGGCGCACGTAACCGCGTG
GAAGCAGTGGCGCGTGGTATGCACTATCGGTTGCTGGAGCCATAA

Upstream 100 bases:

>100_bases
GTGACGATAATGTGGCCGGCAAGCCCATCCATTGGCAAAAGTGCTAGGTTTTCCATGCTGGATGTCATCTGCTGGCAACC
ACCGGTACCGAAGGATCACC

Downstream 100 bases:

>100_bases
GCATTATTCGAGCGTGCCTGCGTCGCTGCGGTACCGCGGCGACGCAGGTTTCGCAGTGGCAGAGCGCATATGCAATGCCG
CGTCTCTGGCGCGACCCACC

Product: AhyR/AsaR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFDILASLGRDLQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHD
PVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEA
QLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRV
EAVARGMHYRLLEP

Sequences:

>Translated_254_residues
MFDILASLGRDLQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHD
PVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEA
QLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRV
EAVARGMHYRLLEP
>Mature_254_residues
MFDILASLGRDLQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVWCEHGYYQHD
PVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEA
QLLPFLLLAHAFQSRAQELLDPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRV
EAVARGMHYRLLEP

Specific function: Functions as a BHL-responsive transcriptional regulator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 28140; Mature: 28140

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDILASLGRDLQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQ
CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEECCEEEEE
RNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYL
CCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
CDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELL
HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
DPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEECHHHHHHCCHHHH
EAVARGMHYRLLEP
HHHHCCCCCCCCCC
>Mature Secondary Structure
MFDILASLGRDLQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQ
CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEECCEEEEE
RNAPGDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYL
CCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
CDSGMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELL
HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
DPQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEECHHHHHHCCHHHH
EAVARGMHYRLLEP
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]