| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21243711
Identifier: 21243711
GI number: 21243711
Start: 3487005
End: 3488234
Strand: Reverse
Name: 21243711
Synonym: XAC2984
Alternate gene names: NA
Gene position: 3488234-3487005 (Counterclockwise)
Preceding gene: 21243712
Following gene: 77748686
Centisome position: 67.4
GC content: 63.66
Gene sequence:
>1230_bases ATGCATGCAGTTTCATCCGACAACCTGGCTGATTTGCCTTCGCCGCTCACGCTGGAAGCAGTGCATGCGTTGGCGTGTCC GGTCGATACGCATCTGGATTCGCTGTATCTGTCGCGCCTAGGCGGCTTCGATTTCTGGAAGGGCGATTGGAAAGCGCATC GGCGTTCTCCGATCCTCTGGTTGATGTCCAAGACCTCACCGAGAGGCCGCAATCAACCGCTGATGTACCACGTGAGCGGC CCGGACTTTCTCGCCGGCGGCTATGGCGGTGCCTGTTTCAGTGCCCACGCACTTTGGGAAAACCTCGTCGGCGCGCCTTT TCTCGACCCCTGGAAACACTGGGTGGAGCATCGGCGCTATGTCCAGGAGATGGTGGCGGCGAGCGGCGGGCGAATGCGGC TGGCACGCAGCGCCGCCGAGCTACGCGCGATTCGCGCAGCGGGTCTGTGCTGCGCCATCCTGTCGTTGGAAGGTGCGCAC ATGCTTGGACCACGCGGGCGCCGCAGCCAGGCGCTGCGGATAGCGCGTCTGGAAAGTGCAGCCAGGGCCGGCGCCGCCTA TCTGACGCTCAACCATTTCAGCCATACCGACATCTCCCAGGCCGGCTATGCATCGCTCAATCCGTGGCGCGAACGTCAGG GCGCGGGGCTGACGGAGTTTGGCCGGCAGGTGGTGGAGCGCTGCATCGATATCGGGCTTCTGGTGGATCTTTCGCATACC TCAAGCCAGGGGATACGCGACGCCTGCGGCATCTGCCTCCGTCGCAACGTGCCGGCCTTCGTTTCGCATGGCGCATCGCG CAGCGTCACGCGCGGTGTGGAAACGCGGCCGTCGCGTCACTTGGACCGGGCGCTCGACGACGCGGCGATCCGTGCCATCG TGCAGACCGGTGGCTGCATCAGCGTCATCCTGGCGCCGTACTTCTTGCAGCACTCCTATCTGGCCGATGGCACGCCGGAC ATGGATGCCGATCTTGCCTTCGTCGTCGGCTATTACGAAGCGTTCGCCCGACAGATTGCCGCCATGGGGATCGTGGAAGA TCCATGGAAACACTTGAGTTTCGGCAGCGACTTCGATGGCGGCATTTCCAGCCTGCCGACCGGGATGCGCAGCGGTGCGG ATCTGCCCAAGCTCACGCAGGCGATGCTGGATGCCGGCTGGCCGACGCAACGCATCGTCGATGTGTATAGCGGCAACTTT ATGCGGATCTGGGAGCGGGTGCGGCCATAG
Upstream 100 bases:
>100_bases GCTCGACCCATCAAGGCGCACGAAGAATATCGGCCGGATATTCAATGCGGGAACGCGCGTTATGGGTCACTTCTTCAGAC GTCATTGCCGGGGTTCGCCC
Downstream 100 bases:
>100_bases CGTTCCGCCGACTTGGTTGGAAGGCATGGCATGGCGGGTCCTGCGTCGTCTGTCGACGTGCATTGATTGGCGCCCGGCAC TCCGCAGCGACAGCGTTCGC
Product: peptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MHAVSSDNLADLPSPLTLEAVHALACPVDTHLDSLYLSRLGGFDFWKGDWKAHRRSPILWLMSKTSPRGRNQPLMYHVSG PDFLAGGYGGACFSAHALWENLVGAPFLDPWKHWVEHRRYVQEMVAASGGRMRLARSAAELRAIRAAGLCCAILSLEGAH MLGPRGRRSQALRIARLESAARAGAAYLTLNHFSHTDISQAGYASLNPWRERQGAGLTEFGRQVVERCIDIGLLVDLSHT SSQGIRDACGICLRRNVPAFVSHGASRSVTRGVETRPSRHLDRALDDAAIRAIVQTGGCISVILAPYFLQHSYLADGTPD MDADLAFVVGYYEAFARQIAAMGIVEDPWKHLSFGSDFDGGISSLPTGMRSGADLPKLTQAMLDAGWPTQRIVDVYSGNF MRIWERVRP
Sequences:
>Translated_409_residues MHAVSSDNLADLPSPLTLEAVHALACPVDTHLDSLYLSRLGGFDFWKGDWKAHRRSPILWLMSKTSPRGRNQPLMYHVSG PDFLAGGYGGACFSAHALWENLVGAPFLDPWKHWVEHRRYVQEMVAASGGRMRLARSAAELRAIRAAGLCCAILSLEGAH MLGPRGRRSQALRIARLESAARAGAAYLTLNHFSHTDISQAGYASLNPWRERQGAGLTEFGRQVVERCIDIGLLVDLSHT SSQGIRDACGICLRRNVPAFVSHGASRSVTRGVETRPSRHLDRALDDAAIRAIVQTGGCISVILAPYFLQHSYLADGTPD MDADLAFVVGYYEAFARQIAAMGIVEDPWKHLSFGSDFDGGISSLPTGMRSGADLPKLTQAMLDAGWPTQRIVDVYSGNF MRIWERVRP >Mature_409_residues MHAVSSDNLADLPSPLTLEAVHALACPVDTHLDSLYLSRLGGFDFWKGDWKAHRRSPILWLMSKTSPRGRNQPLMYHVSG PDFLAGGYGGACFSAHALWENLVGAPFLDPWKHWVEHRRYVQEMVAASGGRMRLARSAAELRAIRAAGLCCAILSLEGAH MLGPRGRRSQALRIARLESAARAGAAYLTLNHFSHTDISQAGYASLNPWRERQGAGLTEFGRQVVERCIDIGLLVDLSHT SSQGIRDACGICLRRNVPAFVSHGASRSVTRGVETRPSRHLDRALDDAAIRAIVQTGGCISVILAPYFLQHSYLADGTPD MDADLAFVVGYYEAFARQIAAMGIVEDPWKHLSFGSDFDGGISSLPTGMRSGADLPKLTQAMLDAGWPTQRIVDVYSGNF MRIWERVRP
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI11641269, Length=315, Percent_Identity=24.1269841269841, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI193211610, Length=326, Percent_Identity=24.8466257668712, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI193211608, Length=326, Percent_Identity=24.2331288343558, Blast_Score=70, Evalue=5e-12, Organism=Drosophila melanogaster, GI221475880, Length=258, Percent_Identity=25.968992248062, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI161083233, Length=276, Percent_Identity=26.8115942028986, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI281362638, Length=302, Percent_Identity=23.5099337748344, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI281362636, Length=302, Percent_Identity=23.5099337748344, Blast_Score=76, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 44833; Mature: 44833
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAVSSDNLADLPSPLTLEAVHALACPVDTHLDSLYLSRLGGFDFWKGDWKAHRRSPILW CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEE LMSKTSPRGRNQPLMYHVSGPDFLAGGYGGACFSAHALWENLVGAPFLDPWKHWVEHRRY EEECCCCCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VQEMVAASGGRMRLARSAAELRAIRAAGLCCAILSLEGAHMLGPRGRRSQALRIARLESA HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHH ARAGAAYLTLNHFSHTDISQAGYASLNPWRERQGAGLTEFGRQVVERCIDIGLLVDLSHT HHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCC SSQGIRDACGICLRRNVPAFVSHGASRSVTRGVETRPSRHLDRALDDAAIRAIVQTGGCI CCCCHHHHHHHHHHCCCCHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH SVILAPYFLQHSYLADGTPDMDADLAFVVGYYEAFARQIAAMGIVEDPWKHLSFGSDFDG HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC GISSLPTGMRSGADLPKLTQAMLDAGWPTQRIVDVYSGNFMRIWERVRP CHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC >Mature Secondary Structure MHAVSSDNLADLPSPLTLEAVHALACPVDTHLDSLYLSRLGGFDFWKGDWKAHRRSPILW CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEE LMSKTSPRGRNQPLMYHVSGPDFLAGGYGGACFSAHALWENLVGAPFLDPWKHWVEHRRY EEECCCCCCCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH VQEMVAASGGRMRLARSAAELRAIRAAGLCCAILSLEGAHMLGPRGRRSQALRIARLESA HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHH ARAGAAYLTLNHFSHTDISQAGYASLNPWRERQGAGLTEFGRQVVERCIDIGLLVDLSHT HHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCC SSQGIRDACGICLRRNVPAFVSHGASRSVTRGVETRPSRHLDRALDDAAIRAIVQTGGCI CCCCHHHHHHHHHHCCCCHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH SVILAPYFLQHSYLADGTPDMDADLAFVVGYYEAFARQIAAMGIVEDPWKHLSFGSDFDG HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC GISSLPTGMRSGADLPKLTQAMLDAGWPTQRIVDVYSGNFMRIWERVRP CHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]