| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is hsdM [C]
Identifier: 21243627
GI number: 21243627
Start: 3403937
End: 3405994
Strand: Reverse
Name: hsdM [C]
Synonym: XAC2900
Alternate gene names: 21243627
Gene position: 3405994-3403937 (Counterclockwise)
Preceding gene: 21243628
Following gene: 21243626
Centisome position: 65.81
GC content: 60.98
Gene sequence:
>2058_bases ATGAAAGATACCAGAACGGCCGCGGGCCATATCGAAGTCCCTAAGGCATCCGACACCGTGCTCGCCAGCTTCATCTGGAA AAATGCCGAGGACCTGTGGGGCGACTTCAAACACACCGACTTCGGCAAGATCATCCTGCCGTTCACGCTGCTGCGCCGCC TTGAATGCGTGCTGGAACCCACGCGCGATGTCGTCCGCGAGACCCACGCCAAGTTCAAGGACAAGGGCCTGGATACCGAC TTGATCCTGCGCCAGAAGGCCGGCCTTCCGTTCTACAACACCTCGCAGTACTCGCTGGCTACTTTGGGTGCGACCAAGAC CAAGTCGAACCTCGAGGCCTATGTCGCCGCCTTCTCAGACAACGCACGCGTCATCTTCGACCAGTTCAACTTCACCGACA CGATCGCCCGGCTCGCCCGCGCCGACATCTTGTTCAAGATCTGCCAGAACTTCGCCAATACCGACCTGCATCCGGATGTC GTGCCCGACCGGGTGATGTCCAACATCTACGAGCACCTGATCCGCCGGTTCGGCTCCGAGGTCAACGAGGCGGCCGAAGA TTTCATGACGCCACGCGATGTCGTTCACCTGGCCACCACTCTGTTGCTCGATCCGGACGATGCGCTCTTTCGCAACAGCC CCGGCCTGATCCGCACCCTTTACGATCCCACTTGCGGCACCGGCGGCTTCCTCACCGATGCCATGAACTACGTCGACGGC TTCGCCGCTCAGGGCAAGGCCCCGCCCGTCCTGATCCCGTTCGGCCAGGAACTGGAACCGGAAACCCACGCGGTCGCGCT CGCCAACATGCTGCTGCGTCGCCTGGAAACCGAACCCTCTCGTGACCTGTCGGCCAACGTCGCCGGCCCCAAATCCACGC TCTCTCAGGATGCCTACGCAGGCCAGCGCTTCCACTACTGCCTCTCCAACCCGCCCTTCGGCAAGAAGTGGGAGAAGGAC CAGGCGTTCGTCGAACGCGAAGCCAAGGAAAAGGGCTTCGAGGGACGTTTCGGTGCAGGCACCCCGCGCGTGTCCGACGG CTCAATGCTCTTCATTCAACACCTGATCTCTAAGCTGGAGCACCCCAACAAGGGCGGCGGCCGCGCGGCCATCATCCTGT CGGGCTCGCCCCTGTTCACCGGCACCGCAGGTGGTCATGGCCATAGCGAGTCGCAGATCCGCCGGTGGCTGCTCGAGAAG GACTACGTCGAAACCATTGTCGCCTTGCCAAACGACATCTTCTTCCGTACCGGTATCGGTACTTACATCTGGCTGCTGAC CAACAACAAGCCAGAGGACCGCCGCGGCAAGATCCAGCTGATCGACGCTACCGAGATGCACAGCCCCATGCGTAAGGCCG AAGGTAACAAGCGCCGCTACCTGAGCGACGGGCAGATCCAGGACATCGCACGGCTCTATGCCGACTACACACCCGGGGAG AATGTGCGGATCGTGGACTATCGCGATTTCGGCTATCGCCGGATCAAGGTCCAGCGACCGCTGCGCCTGGTCGCCAAGGT GACTGAGGAAGGTCTTGCCACCTTGGCGACCAGCAAGGCCTTCGCCAAGCTTGATGAGACTGAGCAATCCGGTTGGCTCA CTCTGCTGCGCAAGCATCTGGGCCAGACTTACCCCTATACCTGGTTCGCCACCTTGCCAGCTCTGGCCAAGAAGGCTGGC TTGCCGAAGATCGCAAAGGCTCTAGCGACGGCTCTGGAGAGCGCTTTGGGTGTGCGAGACGACAAGGCACCAGAAGTGGT GGACGCCGATGGCAACCTCGTTGCCGACAAGGACCTGGAAGATTTCGAGACTGTCCCGCTGGACCAGCCCATCGACACCT ACATGGCTGCCGAAGTACTGCCCCACGTGTCCGACGCATGGGTGGACGCCAGCTTTACGGATGATGAGGATGGCCAGCGC GGCAAGGTCGGCTACGAGATCAACTTCAACCGCTACTTCTACAAATACGTTCCGCCGCGTGACCTGCACGAAATCGACTC AGAGTTGAAGGCCGTTGAGGCTGAAATCGCCGCACTGCTGGATGAGGTGGCGGAATGA
Upstream 100 bases:
>100_bases TGCAACCCATTTGGAAGATCTTTCTGTATCTCAGCGGCTTCAAGCAGGGCGCCAACGGGCCGACATCATCTCTACAAGTT CAAAAATGGCTATGAATCAA
Downstream 100 bases:
>100_bases CCCCCGCCCTTTACCACAAGGCGTTCAAGTCATCTGGCGCGCCGTGGCTTGGGAATGTGCCCACCCATTGGGTGGTGAAA CCTCTGTGGTCCATGTACAG
Product: type I restriction-modification system DNA methylase
Products: NA
Alternate protein names: M.HindVIIP [H]
Number of amino acids: Translated: 685; Mature: 685
Protein sequence:
>685_residues MKDTRTAAGHIEVPKASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEPTRDVVRETHAKFKDKGLDTD LILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSDNARVIFDQFNFTDTIARLARADILFKICQNFANTDLHPDV VPDRVMSNIYEHLIRRFGSEVNEAAEDFMTPRDVVHLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDG FAAQGKAPPVLIPFGQELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYAGQRFHYCLSNPPFGKKWEKD QAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLEHPNKGGGRAAIILSGSPLFTGTAGGHGHSESQIRRWLLEK DYVETIVALPNDIFFRTGIGTYIWLLTNNKPEDRRGKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGE NVRIVDYRDFGYRRIKVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHLGQTYPYTWFATLPALAKKAG LPKIAKALATALESALGVRDDKAPEVVDADGNLVADKDLEDFETVPLDQPIDTYMAAEVLPHVSDAWVDASFTDDEDGQR GKVGYEINFNRYFYKYVPPRDLHEIDSELKAVEAEIAALLDEVAE
Sequences:
>Translated_685_residues MKDTRTAAGHIEVPKASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEPTRDVVRETHAKFKDKGLDTD LILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSDNARVIFDQFNFTDTIARLARADILFKICQNFANTDLHPDV VPDRVMSNIYEHLIRRFGSEVNEAAEDFMTPRDVVHLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDG FAAQGKAPPVLIPFGQELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYAGQRFHYCLSNPPFGKKWEKD QAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLEHPNKGGGRAAIILSGSPLFTGTAGGHGHSESQIRRWLLEK DYVETIVALPNDIFFRTGIGTYIWLLTNNKPEDRRGKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGE NVRIVDYRDFGYRRIKVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHLGQTYPYTWFATLPALAKKAG LPKIAKALATALESALGVRDDKAPEVVDADGNLVADKDLEDFETVPLDQPIDTYMAAEVLPHVSDAWVDASFTDDEDGQR GKVGYEINFNRYFYKYVPPRDLHEIDSELKAVEAEIAALLDEVAE >Mature_685_residues MKDTRTAAGHIEVPKASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEPTRDVVRETHAKFKDKGLDTD LILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSDNARVIFDQFNFTDTIARLARADILFKICQNFANTDLHPDV VPDRVMSNIYEHLIRRFGSEVNEAAEDFMTPRDVVHLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDG FAAQGKAPPVLIPFGQELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYAGQRFHYCLSNPPFGKKWEKD QAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLEHPNKGGGRAAIILSGSPLFTGTAGGHGHSESQIRRWLLEK DYVETIVALPNDIFFRTGIGTYIWLLTNNKPEDRRGKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGE NVRIVDYRDFGYRRIKVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHLGQTYPYTWFATLPALAKKAG LPKIAKALATALESALGVRDDKAPEVVDADGNLVADKDLEDFETVPLDQPIDTYMAAEVLPHVSDAWVDASFTDDEDGQR GKVGYEINFNRYFYKYVPPRDLHEIDSELKAVEAEIAALLDEVAE
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=323, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003356 - InterPro: IPR002296 [H]
Pfam domain/function: PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 76571; Mature: 76571
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDTRTAAGHIEVPKASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEP CCCCCCCCCEEECCCCCHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH TRDVVRETHAKFKDKGLDTDLILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSD HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHEEECC NARVIFDQFNFTDTIARLARADILFKICQNFANTDLHPDVVPDRVMSNIYEHLIRRFGSE CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHH VNEAAEDFMTPRDVVHLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDG HHHHHHHHCCHHHHHHHHHHHEECCCHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHH FAAQGKAPPVLIPFGQELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYA HHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC GQRFHYCLSNPPFGKKWEKDQAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLE CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC HPNKGGGRAAIILSGSPLFTGTAGGHGHSESQIRRWLLEKDYVETIVALPNDIFFRTGIG CCCCCCCEEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC TYIWLLTNNKPEDRRGKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGE EEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC NVRIVDYRDFGYRRIKVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHL CEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC GQTYPYTWFATLPALAKKAGLPKIAKALATALESALGVRDDKAPEVVDADGNLVADKDLE CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEECCCCH DFETVPLDQPIDTYMAAEVLPHVSDAWVDASFTDDEDGQRGKVGYEINFNRYFYKYVPPR HHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCC DLHEIDSELKAVEAEIAALLDEVAE HHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKDTRTAAGHIEVPKASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEP CCCCCCCCCEEECCCCCHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH TRDVVRETHAKFKDKGLDTDLILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSD HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHEEECC NARVIFDQFNFTDTIARLARADILFKICQNFANTDLHPDVVPDRVMSNIYEHLIRRFGSE CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHH VNEAAEDFMTPRDVVHLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDG HHHHHHHHCCHHHHHHHHHHHEECCCHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHH FAAQGKAPPVLIPFGQELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYA HHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC GQRFHYCLSNPPFGKKWEKDQAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLE CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC HPNKGGGRAAIILSGSPLFTGTAGGHGHSESQIRRWLLEKDYVETIVALPNDIFFRTGIG CCCCCCCEEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC TYIWLLTNNKPEDRRGKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGE EEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC NVRIVDYRDFGYRRIKVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHL CEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC GQTYPYTWFATLPALAKKAGLPKIAKALATALESALGVRDDKAPEVVDADGNLVADKDLE CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEECCCCH DFETVPLDQPIDTYMAAEVLPHVSDAWVDASFTDDEDGQRGKVGYEINFNRYFYKYVPPR HHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCC DLHEIDSELKAVEAEIAALLDEVAE HHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]