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The map label for this gene is yciR [C]

Identifier: 21243539

GI number: 21243539

Start: 3297290

End: 3299656

Strand: Reverse

Name: yciR [C]

Synonym: XAC2812

Alternate gene names: 21243539

Gene position: 3299656-3297290 (Counterclockwise)

Preceding gene: 21243540

Following gene: 21243538

Centisome position: 63.75

GC content: 64.68

Gene sequence:

>2367_bases
ATGCATCTGGTGCGTGGCTGGCTGACGCTTCCTCTGGCGCTGTTGATCGGTATCGCCGTCTGCATGACGGTGGTGTCGGC
GCTGGTGATCGAAGTCCAGTCCGGCGCTACTGCCTGGATCGTCGGCCAAAACCATTGGTCCAACGCCCAGCAAGAATCGG
TGTACTGGATGGAGCGCTACCTGGGCAGCGGCGATACGGCCGATCTGCAGGCCGCCTGCCGCGCGCTGGAAGTGCCGCTG
GGCGACCGTGCCGCACGCGTGGCGATCGAACAACCGGTGATCGATTGGGACGCGGTCTACGCCGGTCTGGGCGCTGGGCG
TAATGCTCATCAAGACATGCCGCAAATGGTGCGGTTGTATCGCTACGGGCACCAAATTCCGTATCTCGGCGACGCCATCG
CGCTGTGGAAGCGCACCGACGTCGGCATCCTGCAACTGAGCGACCTGGCCGACCGTGCCGCTTCGGTGCAGGCCGCCAAC
CGGCCCGACCCGCGTGCGCTGCAGGCACTGCGCGATGAACTGCATCTGCTGGACGGTCGCATGCGCCGCGACGCCTCCGA
ATTCCTGGCCTACCTGACCCGCTGCGCGCGGCTGCTGCACGATGTGATGGTGGTCTGCAGCCTGGCCACCTTGCTGCTGG
TATTGATCACCTGCGTACTGGCGATGCGGCGCATTCGCGATTATCTGCTGTCGCACGAAGGCCGCTTCCGCACCGCGTTT
CAGCAGGCGGCGCTGGGCATGGTCAAGTTCGATCTGCGCGGCAACGTGCTGGATGCGAACGCGTCGATGGCCAATGTGCT
GCTCTACCGCCCCGAAGAGCTGCAGGCCTGCACGCTGGCCGAGGTGATGCATCCGGAAGACATCAAGCTGGACAGCCGCG
GCATGCTCGATTGGCCCAAGCTGCTGCAGTCCGGCGAGTTGCGCTTCGTGCGTGCCGATGGCGGGGTGATGTGGGGCCGC
TGGAGCGCCTCGTTGGTCGAGCCGGGGCCGGAAGAGCCGACCCTGGTGCTGGCGGTGATCGAAGATGTCTCGCACGCCCA
TGAGCTGGCCGACGAAGTGGCCTTCCATGCGCGCCACGATGCGATGACCGGGCTGATCAATCGGCATGAAATCGAACGCC
GGCTGCTGCGCCTGATCGAGCTGCCGCAATCGCCGCAGATGTGCCACGCGCTGTGCTTTGTCGACCTGGATCATTTCAAG
CTGGTCAACGACACCTTCGGGCATGCGGTCGGCGACAGATTCCTGTGCCACTTCGCCGATGTGATCACCATGCAGCTGCG
TTCCGGCGATTGGTTGGGGCGCCTGGGCGGCGATGAGTTCGCCATCCTGTTGGCCAATACCGATCTGGCGCAGGCTCAAA
TCGTGCTGGAACGCATGCACGGCGCGCTCGGGCAACCGTGGAGCCATCAAGGCGGGCGGCCGCTGACGCCCAGTTGCAGT
TTTGGCGTGGTGGAGATTCGCCAGGGCGTCGGCGACCTCAATGCCTTGATGACCGCCGCCGATCTGGCCTGTCATGCGGC
CAAGGAAGAAGGGCGCAACCGCATTCGCTGCTTCAACGAAAACGATCTGGCACTGGCGCAGCGCCGCCACGATGGCGGCT
GGATCAGTGCGGTGCAACAGGCGATCGCCGAAGAGCGTTTGCTGTTGTACGCGCAGAAAATCCAGGTGCTGAACGACCCG
GGACGCCTGCAGTACGAGGTGCTGGTACGCATGCGCGCCAGCGACGGACGGGTGCTGACTCCGGGTGAATTCTTGCCGGC
AGTGGAGCGTTACGGCTTGGGGCGCATGGTCGATACCTATGTGCTGGAAGCGCTGTGCGCGCAGTTGTCGGCCAACCCGA
TGCATGTGGCGACGCTGGACCTGTGCCACGTCAATCTGTCTGCGCAGTCGATCGCGCAACCGGATTTTCTCGACGTCGTC
TGCGCCCTGTTCGAGCGCTACCCGGCACTGGTGCCGAAGCTGTGCATGGAGATCACCGAGACCGCGGTCATCGGCGATTT
GGAACACGCGCAGCGTTTCGTGCAGAGCGTGCGCGCGCACGGCTGCCACGTGGCGCTGGACGATTTCGGCAGCGGCCTGG
CCTCGTTCGGCTATCTCAAGCAATTCACCGTGGACGTGTTGAAGATCGATTGCGGCTTCGTCCGCAACTATGCGCACGAT
GCGGTGGATCGCGCGGCGGTGCATTCGATCGCCCAGGTCGGGCTGGCGCTGGGCATCGAGGTGGTCGCCGAAGGCGTGGA
ATCGGAGGCCGACATCCCCGGGCTGCGCGAAGCCGGTGTGGGCCAGGTGCAGGGTTTCAGCCTGCATCGTCCATGCCCGC
TGGAAGAGCTGTTGCACACGCCGCAGCTGGTGGCCGTCTCCGGGTAA

Upstream 100 bases:

>100_bases
ACTGCCTTCAGGCGCCCAGTGGGTGCCTGAATCGCACTAGGGCGGCGAAGGACGGACGGCGATGGCGCAGGCGATACGCG
GCAAGGGCGGTGGGCAGACC

Downstream 100 bases:

>100_bases
GCGCGCTTGACCCAGGCGACTTCCCGCAGCGTCATGCCGGTGCTGCGTGTACACGCCTCTGGCGGCTGCACGGTAGTTTT
GTCGGCTGCTCTAAATCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQNHWSNAQQESVYWMERYLGSGDTADLQAACRALEVPL
GDRAARVAIEQPVIDWDAVYAGLGAGRNAHQDMPQMVRLYRYGHQIPYLGDAIALWKRTDVGILQLSDLADRAASVQAAN
RPDPRALQALRDELHLLDGRMRRDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAF
QQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGELRFVRADGGVMWGR
WSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFK
LVNDTFGHAVGDRFLCHFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGALGQPWSHQGGRPLTPSCS
FGVVEIRQGVGDLNALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKIQVLNDP
GRLQYEVLVRMRASDGRVLTPGEFLPAVERYGLGRMVDTYVLEALCAQLSANPMHVATLDLCHVNLSAQSIAQPDFLDVV
CALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRAHGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
AVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLHTPQLVAVSG

Sequences:

>Translated_788_residues
MHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQNHWSNAQQESVYWMERYLGSGDTADLQAACRALEVPL
GDRAARVAIEQPVIDWDAVYAGLGAGRNAHQDMPQMVRLYRYGHQIPYLGDAIALWKRTDVGILQLSDLADRAASVQAAN
RPDPRALQALRDELHLLDGRMRRDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAF
QQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGELRFVRADGGVMWGR
WSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFK
LVNDTFGHAVGDRFLCHFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGALGQPWSHQGGRPLTPSCS
FGVVEIRQGVGDLNALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKIQVLNDP
GRLQYEVLVRMRASDGRVLTPGEFLPAVERYGLGRMVDTYVLEALCAQLSANPMHVATLDLCHVNLSAQSIAQPDFLDVV
CALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRAHGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
AVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLHTPQLVAVSG
>Mature_788_residues
MHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQNHWSNAQQESVYWMERYLGSGDTADLQAACRALEVPL
GDRAARVAIEQPVIDWDAVYAGLGAGRNAHQDMPQMVRLYRYGHQIPYLGDAIALWKRTDVGILQLSDLADRAASVQAAN
RPDPRALQALRDELHLLDGRMRRDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAF
QQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGELRFVRADGGVMWGR
WSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFK
LVNDTFGHAVGDRFLCHFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGALGQPWSHQGGRPLTPSCS
FGVVEIRQGVGDLNALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKIQVLNDP
GRLQYEVLVRMRASDGRVLTPGEFLPAVERYGLGRMVDTYVLEALCAQLSANPMHVATLDLCHVNLSAQSIAQPDFLDVV
CALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRAHGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
AVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLHTPQLVAVSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=28.3410138248848, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI1788381, Length=447, Percent_Identity=27.7404921700224, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI1788849, Length=395, Percent_Identity=26.8354430379747, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI226510982, Length=307, Percent_Identity=35.1791530944625, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=31.8181818181818, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081921, Length=423, Percent_Identity=25.531914893617, Blast_Score=122, Evalue=9e-29,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=27.9661016949153, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=36.5714285714286, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081881, Length=314, Percent_Identity=28.6624203821656, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=35.0993377483444, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=27.6422764227642, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081980, Length=217, Percent_Identity=29.9539170506912, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=33.5403726708075, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788502, Length=224, Percent_Identity=28.125, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=30.4347826086957, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786507, Length=215, Percent_Identity=29.3023255813954, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1789650, Length=479, Percent_Identity=22.964509394572, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1787055, Length=254, Percent_Identity=25.5905511811024, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87081845, Length=213, Percent_Identity=25.8215962441315, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=30.4597701149425, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=29.608938547486, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=108, Percent_Identity=37.962962962963, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86930; Mature: 86930

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQNHWSNAQQESVYWMERY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
LGSGDTADLQAACRALEVPLGDRAARVAIEQPVIDWDAVYAGLGAGRNAHQDMPQMVRLY
HCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
RYGHQIPYLGDAIALWKRTDVGILQLSDLADRAASVQAANRPDPRALQALRDELHLLDGR
HHCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
MRRDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAF
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPK
HHHHHHHEEEECCCCEEECCCCHHHEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
LLQSGELRFVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHD
HHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
AMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLCHFAD
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGALGQPWSHQGGRPLTPSCS
HHHHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
FGVVEIRQGVGDLNALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQ
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCHHHHHHHH
AIAEERLLLYAQKIQVLNDPGRLQYEVLVRMRASDGRVLTPGEFLPAVERYGLGRMVDTY
HHHHHHHHHHHHHHHHHCCCCCEEEEHHEEEECCCCCEECCHHHHHHHHHCCCHHHHHHH
VLEALCAQLSANPMHVATLDLCHVNLSAQSIAQPDFLDVVCALFERYPALVPKLCMEITE
HHHHHHHHHCCCCEEEEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TAVIGDLEHAQRFVQSVRAHGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
HHHHCCHHHHHHHHHHHHHCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLHT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHCC
PQLVAVSG
CCEEEECC
>Mature Secondary Structure
MHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQNHWSNAQQESVYWMERY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
LGSGDTADLQAACRALEVPLGDRAARVAIEQPVIDWDAVYAGLGAGRNAHQDMPQMVRLY
HCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
RYGHQIPYLGDAIALWKRTDVGILQLSDLADRAASVQAANRPDPRALQALRDELHLLDGR
HHCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
MRRDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAF
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPK
HHHHHHHEEEECCCCEEECCCCHHHEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
LLQSGELRFVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHD
HHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
AMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLCHFAD
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGALGQPWSHQGGRPLTPSCS
HHHHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
FGVVEIRQGVGDLNALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQ
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCHHHHHHHH
AIAEERLLLYAQKIQVLNDPGRLQYEVLVRMRASDGRVLTPGEFLPAVERYGLGRMVDTY
HHHHHHHHHHHHHHHHHCCCCCEEEEHHEEEECCCCCEECCHHHHHHHHHCCCHHHHHHH
VLEALCAQLSANPMHVATLDLCHVNLSAQSIAQPDFLDVVCALFERYPALVPKLCMEITE
HHHHHHHHHCCCCEEEEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TAVIGDLEHAQRFVQSVRAHGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHD
HHHHCCHHHHHHHHHHHHHCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLHT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHCC
PQLVAVSG
CCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]