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The map label for this gene is p49 [H]

Identifier: 21243471

GI number: 21243471

Start: 3210933

End: 3212552

Strand: Reverse

Name: p49 [H]

Synonym: XAC2744

Alternate gene names: 21243471

Gene position: 3212552-3210933 (Counterclockwise)

Preceding gene: 21243475

Following gene: 77748672

Centisome position: 62.07

GC content: 66.98

Gene sequence:

>1620_bases
GTGAGCGGTGCTATATACCGGTGCATGGCCATCGCCTCTGAACCCCTGGATGCACTGATCATCGGCGCCGGCCACAACGG
GCTGGTGTGCGCTGCCTATCTGGCCAGGGCCGGCAAACGGGTGCTGGTGCTGGAAGCGCGCGAGGTGGTCGGCGGTGCGG
CGGTGACCGAGGAGTTTCATCCCGGTTTCCGCAATTCGGTGGCGGCGTACACGGTGTCGTTGCTGCAGCCCAGGGTCATC
GCCGATCTGGCACTGGAGCGCCATGGCCTGCGGGTGGTGCCGCGACGCATCAACAACTTTCTGCCGTTGCCGAACGGCGA
CTATCTGCTTGCCGGGGCAGGGCGCACGGCACAGGACGTCGCCAGGTTCTCAGCGCGGGATGCGGCTGCCTTGCCCGCCT
ACGAAGCGCGATTGGAGCAACTGGCCGATGTATTGCGTGCGCTGGCCTTGCAGCCACCGCCCGATGTCACCGATGGCGGC
TGGCTGCAGGCATTGCCGCAGCTATGGCGGGCAGGCAAGCTCGGACTGCAGTTGCAGGGCCTGCCGCTGACATTGCGTCA
GGAGCTGTTGGACCTGTTCACGATTTCAGCGGCCGAGTATCTGGATCGCTGGTTCGAAAGCGCGCCGATCAAGGCCTTGT
TCGGCTTCGATGGCATCGTCGGCAATTACGCCAGCCCTCACACGCCGGGCACCGCATACGTGTTGTTGCACCACGTGTTC
GGGCAGAGCAACGGGGTCAAGGGGGCGTGGGGCCACGCCATTGGCGGCATGGGCGCGATCACTCAGGCCATGGCCGCCAG
CGCGCGCGAGTACGGGGCGCAACTGCGTACCGGCTGCGCGGTGGAGCGCGTGCTGGTAGAGCAGGGGCATGCGGTCGGTG
TCGTCACGACCGCCGGCGAAACCGTCCGCGCTCGCGCGGTCGTGGCCAACGTCAACCCGAAACTGCTGTATCAGCGCCTG
ATGCGGCCAGACGACGTGCCTGCGACAACGCGCGAACGTATTGCGCATTACCGCTGCGGGTCGGGCACCTTCCGCATGAA
TGTCGCGCTCTCGCGCCTGCCGGACTTCGCGGCATTACCCGGCAATGGCGATCATCTGACCGCCGGCATCATCCTGGCGC
CGAGCCTGGACTACATGGACCGCGCCTGGCACGACGCGCGCGCTTTCGGGTGGTCGCGTGAGCCGGTGGTCGAACTGCTC
ATTCCCAGCACCCTGGACGACACCCTTGCGCCACCTGGCCAACATGTCGCCAGCCTGTTCTGCCAGCACGTGGCCCCGCA
ACTGCCCGACGGCAGGCGGTGGGACGATCACCGCGAAGAGGTGGCCGATCTGATGATCGCCACGGTGGAACGCTACGCGC
CCGGGTTCGCCGCATCGGTACTGGGCCGGCAAGTGCTGAGCCCGCTCGATCTGGAACGCATGTTCGGCCTGGTTGGCGGC
GACATCTTCCACGGCGCCCTCAGCCTCAATCAGCTGTTCAGCGCACGCCCGCTACTGGGCCAGGGTGCGTATCGCGGCGC
GGTGCCAGGGCTGTATCTGTGCGGCTCCGGGACCCATCCCGGTGGAGGCGTGACGGGTGCGCCTGGGCATAACGCGGCGC
GGGTGATCTTGGGTGGGTGA

Upstream 100 bases:

>100_bases
GCGGCTGTTCCTCGCCTACCACTGCACGCGCCGGCGCGGTGTTGCGTCGATAGCGACGGGCGGGCGTGCATGCGCTGCCG
CTGCCAGATGGTGGGCGCGG

Downstream 100 bases:

>100_bases
GGTGGTTGGCAATGGCTCCAAAAAGATGGCAGCCAAAAAAGGCCCCGGAAAAACCGGGGCCAGAGACAGTACGCTTGCAG
TACGAAGGCGAAATGAGCCA

Product: phytoene dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MSGAIYRCMAIASEPLDALIIGAGHNGLVCAAYLARAGKRVLVLEAREVVGGAAVTEEFHPGFRNSVAAYTVSLLQPRVI
ADLALERHGLRVVPRRINNFLPLPNGDYLLAGAGRTAQDVARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGG
WLQALPQLWRAGKLGLQLQGLPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVF
GQSNGVKGAWGHAIGGMGAITQAMAASAREYGAQLRTGCAVERVLVEQGHAVGVVTTAGETVRARAVVANVNPKLLYQRL
MRPDDVPATTRERIAHYRCGSGTFRMNVALSRLPDFAALPGNGDHLTAGIILAPSLDYMDRAWHDARAFGWSREPVVELL
IPSTLDDTLAPPGQHVASLFCQHVAPQLPDGRRWDDHREEVADLMIATVERYAPGFAASVLGRQVLSPLDLERMFGLVGG
DIFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG

Sequences:

>Translated_539_residues
MSGAIYRCMAIASEPLDALIIGAGHNGLVCAAYLARAGKRVLVLEAREVVGGAAVTEEFHPGFRNSVAAYTVSLLQPRVI
ADLALERHGLRVVPRRINNFLPLPNGDYLLAGAGRTAQDVARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGG
WLQALPQLWRAGKLGLQLQGLPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVF
GQSNGVKGAWGHAIGGMGAITQAMAASAREYGAQLRTGCAVERVLVEQGHAVGVVTTAGETVRARAVVANVNPKLLYQRL
MRPDDVPATTRERIAHYRCGSGTFRMNVALSRLPDFAALPGNGDHLTAGIILAPSLDYMDRAWHDARAFGWSREPVVELL
IPSTLDDTLAPPGQHVASLFCQHVAPQLPDGRRWDDHREEVADLMIATVERYAPGFAASVLGRQVLSPLDLERMFGLVGG
DIFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG
>Mature_538_residues
SGAIYRCMAIASEPLDALIIGAGHNGLVCAAYLARAGKRVLVLEAREVVGGAAVTEEFHPGFRNSVAAYTVSLLQPRVIA
DLALERHGLRVVPRRINNFLPLPNGDYLLAGAGRTAQDVARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGGW
LQALPQLWRAGKLGLQLQGLPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVFG
QSNGVKGAWGHAIGGMGAITQAMAASAREYGAQLRTGCAVERVLVEQGHAVGVVTTAGETVRARAVVANVNPKLLYQRLM
RPDDVPATTRERIAHYRCGSGTFRMNVALSRLPDFAALPGNGDHLTAGIILAPSLDYMDRAWHDARAFGWSREPVVELLI
PSTLDDTLAPPGQHVASLFCQHVAPQLPDGRRWDDHREEVADLMIATVERYAPGFAASVLGRQVLSPLDLERMFGLVGGD
IFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=546, Percent_Identity=42.8571428571429, Blast_Score=395, Evalue=1e-110,
Organism=Caenorhabditis elegans, GI17540238, Length=532, Percent_Identity=39.4736842105263, Blast_Score=378, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57461; Mature: 57329

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAIYRCMAIASEPLDALIIGAGHNGLVCAAYLARAGKRVLVLEAREVVGGAAVTEEFH
CCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHCCHHHHHHHC
PGFRNSVAAYTVSLLQPRVIADLALERHGLRVVPRRINNFLPLPNGDYLLAGAGRTAQDV
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEHHHHHHCCCCCCCCCEEEECCCCCHHHH
ARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGGWLQALPQLWRAGKLGLQLQG
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
LPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCCCCHHHHHHHHHH
GQSNGVKGAWGHAIGGMGAITQAMAASAREYGAQLRTGCAVERVLVEQGHAVGVVTTAGE
CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
TVRARAVVANVNPKLLYQRLMRPDDVPATTRERIAHYRCGSGTFRMNVALSRLPDFAALP
CEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHEECCCCEEEEEEHHHHCCCCEECC
GNGDHLTAGIILAPSLDYMDRAWHDARAFGWSREPVVELLIPSTLDDTLAPPGQHVASLF
CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHH
CQHVAPQLPDGRRWDDHREEVADLMIATVERYAPGFAASVLGRQVLSPLDLERMFGLVGG
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
DIFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
SGAIYRCMAIASEPLDALIIGAGHNGLVCAAYLARAGKRVLVLEAREVVGGAAVTEEFH
CCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHCCHHHHHHHC
PGFRNSVAAYTVSLLQPRVIADLALERHGLRVVPRRINNFLPLPNGDYLLAGAGRTAQDV
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEHHHHHHCCCCCCCCCEEEECCCCCHHHH
ARFSARDAAALPAYEARLEQLADVLRALALQPPPDVTDGGWLQALPQLWRAGKLGLQLQG
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
LPLTLRQELLDLFTISAAEYLDRWFESAPIKALFGFDGIVGNYASPHTPGTAYVLLHHVF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCCCCCCCCCHHHHHHHHHH
GQSNGVKGAWGHAIGGMGAITQAMAASAREYGAQLRTGCAVERVLVEQGHAVGVVTTAGE
CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
TVRARAVVANVNPKLLYQRLMRPDDVPATTRERIAHYRCGSGTFRMNVALSRLPDFAALP
CEEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHEECCCCEEEEEEHHHHCCCCEECC
GNGDHLTAGIILAPSLDYMDRAWHDARAFGWSREPVVELLIPSTLDDTLAPPGQHVASLF
CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHH
CQHVAPQLPDGRRWDDHREEVADLMIATVERYAPGFAASVLGRQVLSPLDLERMFGLVGG
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
DIFHGALSLNQLFSARPLLGQGAYRGAVPGLYLCGSGTHPGGGVTGAPGHNAARVILGG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]