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The map label for this gene is virB1 [H]

Identifier: 21243348

GI number: 21243348

Start: 3082452

End: 3083294

Strand: Reverse

Name: virB1 [H]

Synonym: XAC2617

Alternate gene names: 21243348

Gene position: 3083294-3082452 (Counterclockwise)

Preceding gene: 21243349

Following gene: 21243347

Centisome position: 59.57

GC content: 59.31

Gene sequence:

>843_bases
ATGTTGCCTGGCATGGAACTGATGGGGTGCACTGGACTGGCCGTCCCCGGCGAGGTAATGCAGCACGTTGTCCGTATCGA
GTCGTCGCGTAATCCCTACGCCATTGGTGTCGTTGGTGGACGCCTGGTGCGCGAGCCACGCGGTCTGGCTGAGGCCGTCG
CCACAGCGAAGATGCTGGAGCAGAAGGGTTACAACTTTTCGCTGGGTCTAGGTCAGGTCAATCGGTACAACCTGCAGAAG
TACGGTTTGGCTACCTATGAGATGGCATTCGACAAATGCCCTAACTTGGTCGCTGCGTCAAAAATTCTGGCCGAATGCCA
CTCGCGTTCTGGCGCCAATTGGGGGAAGTCGTTTAGCTGCTACTACTCCGGAAATTTTGAAACCGGCTTCAAACATGGCT
ACGTGCAGAAGATCTATGCCTCCATTCGTCAGTCGGTCGCGTCTTCCGGCGCAGAGCCCATCGCGGTCGTGCCAACCCGC
CAGGTGCAATTGAAGCCCGCAAATCCCCTGCGACAGGCTGCAGCCGAGTTGGCAGACGCGATTGTGGCTCGTCGCATTCA
GGAATTTTCCGGGGCGAGCCACACAGCGGCTTCACCGCCAGGGCCTATGCTATCCCAGCCTGCACCAGCGTATTCCTTGC
CGAGTCGGGTGGCGCCTGTGGCTCCTGCAGCTGCTCCGGAAGAAAACGAACTGTATGTGGTGAAGGCAACCGGGCAGGGG
CGTGGGGTGGCGGTACCAGCCCCCGGTCCGCAGGCCTTGACGCCGACCGACCAATCTGTACCGGCTTCTATGCAGCGAGC
ACCGCAGACAGTTCCGCAAGTGGATAGCGCATTCGTTTTTTAG

Upstream 100 bases:

>100_bases
TCATCACGGGTATCGATTTCGATCCTCTTCGCACCCTGCGCGGCGGCTAGGGCATCGAGTTCGTCGCTGATTTTGATCTG
GTTTTGGAAGGAGTACTGAC

Downstream 100 bases:

>100_bases
GATGGAAATTGCCAAGGATATGGCTGCTGGACCCCCTCTGTTCCCAAGGAGTTAGACATGAAGTTTGAAATCGATAACAA
GACGATCGCCGATGCCAAAA

Product: VirB1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MLPGMELMGCTGLAVPGEVMQHVVRIESSRNPYAIGVVGGRLVREPRGLAEAVATAKMLEQKGYNFSLGLGQVNRYNLQK
YGLATYEMAFDKCPNLVAASKILAECHSRSGANWGKSFSCYYSGNFETGFKHGYVQKIYASIRQSVASSGAEPIAVVPTR
QVQLKPANPLRQAAAELADAIVARRIQEFSGASHTAASPPGPMLSQPAPAYSLPSRVAPVAPAAAPEENELYVVKATGQG
RGVAVPAPGPQALTPTDQSVPASMQRAPQTVPQVDSAFVF

Sequences:

>Translated_280_residues
MLPGMELMGCTGLAVPGEVMQHVVRIESSRNPYAIGVVGGRLVREPRGLAEAVATAKMLEQKGYNFSLGLGQVNRYNLQK
YGLATYEMAFDKCPNLVAASKILAECHSRSGANWGKSFSCYYSGNFETGFKHGYVQKIYASIRQSVASSGAEPIAVVPTR
QVQLKPANPLRQAAAELADAIVARRIQEFSGASHTAASPPGPMLSQPAPAYSLPSRVAPVAPAAAPEENELYVVKATGQG
RGVAVPAPGPQALTPTDQSVPASMQRAPQTVPQVDSAFVF
>Mature_280_residues
MLPGMELMGCTGLAVPGEVMQHVVRIESSRNPYAIGVVGGRLVREPRGLAEAVATAKMLEQKGYNFSLGLGQVNRYNLQK
YGLATYEMAFDKCPNLVAASKILAECHSRSGANWGKSFSCYYSGNFETGFKHGYVQKIYASIRQSVASSGAEPIAVVPTR
QVQLKPANPLRQAAAELADAIVARRIQEFSGASHTAASPPGPMLSQPAPAYSLPSRVAPVAPAAAPEENELYVVKATGQG
RGVAVPAPGPQALTPTDQSVPASMQRAPQTVPQVDSAFVF

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 29614; Mature: 29614

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPGMELMGCTGLAVPGEVMQHVVRIESSRNPYAIGVVGGRLVREPRGLAEAVATAKMLE
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHH
QKGYNFSLGLGQVNRYNLQKYGLATYEMAFDKCPNLVAASKILAECHSRSGANWGKSFSC
HCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEE
YYSGNFETGFKHGYVQKIYASIRQSVASSGAEPIAVVPTRQVQLKPANPLRQAAAELADA
EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHHH
IVARRIQEFSGASHTAASPPGPMLSQPAPAYSLPSRVAPVAPAAAPEENELYVVKATGQG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
RGVAVPAPGPQALTPTDQSVPASMQRAPQTVPQVDSAFVF
CEEEECCCCCCCCCCCCCCCCHHHHHCCCHHCCCHHHCCC
>Mature Secondary Structure
MLPGMELMGCTGLAVPGEVMQHVVRIESSRNPYAIGVVGGRLVREPRGLAEAVATAKMLE
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHH
QKGYNFSLGLGQVNRYNLQKYGLATYEMAFDKCPNLVAASKILAECHSRSGANWGKSFSC
HCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEE
YYSGNFETGFKHGYVQKIYASIRQSVASSGAEPIAVVPTRQVQLKPANPLRQAAAELADA
EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHHH
IVARRIQEFSGASHTAASPPGPMLSQPAPAYSLPSRVAPVAPAAAPEENELYVVKATGQG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
RGVAVPAPGPQALTPTDQSVPASMQRAPQTVPQVDSAFVF
CEEEECCCCCCCCCCCCCCCCHHHHHCCCHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]