| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is yieO [H]
Identifier: 21243227
GI number: 21243227
Start: 2909542
End: 2910957
Strand: Direct
Name: yieO [H]
Synonym: XAC2494
Alternate gene names: 21243227
Gene position: 2909542-2910957 (Clockwise)
Preceding gene: 21243226
Following gene: 21243230
Centisome position: 56.22
GC content: 66.67
Gene sequence:
>1416_bases GTGTCCGAGGCCGGCGCTACGCCGCCGCGTTATCCCGATTACCGCATCATCTCGCTGATCCTGGCTTGCGCCATTTTCAT GGAGCAGATGGATGCCACCGTGCTGGCCACCGCGCTGCCGACGCTGGCGCGCGATTTCGGCGTGGCGGCGCCGGCCATGA GCATCGCCATGACCAGCTACCTGCTGGCCCTGGCGGTGCTGATCCCGGCCAGCGGCGCCATCGCCGACCGCTTCGGCCTG CGCCGCGTGTTCGGCGCCTCCATCTGGGTGTTCGTCGGTGGTTCGATCCTGTGTTCGCTGGCCGACAGCCTGCCCACCAT GGTGGCCGCGCGCGTGCTGCAGGGCGCAGGCGGCGCCATGATGGCCCCGCTGGGCCGGCTGATCCTGCTGCGCACGGTGG AACGCCGCCATCTGGTGTCGGCGATGGCCTGGACGCTGGTGCCGGCCTTCATCGGCCCGATGCTCGGCCCGCCGCTGGGC GGCTTTTTCGTCTCGTACCTGGATTGGCGCTGGATCTTCTATATCAACGTGCCGATCGGTATCGCCGGCTTCCTGCTGGT GCGGCGCTTCATTCCCGAGATTCCCACCGAATCGGGGCCAGCGCGCTTCGACCTGCGCGGCTTCGTGCTGTGCGGCACTG CGCTCGGTTGCCTGCTGTTCGGCCTGGAAATGGTCAGCCAGCAAAACGGCATCGGCACGGCCAGCTGGTTGCTGGCGATC GGCGGCAGCGCTGCGCTGGGGTATCTCTGGCACGCGCGTCACCACCCTGCTCCGCTGCTGGATCTGAGCTTGCTGCGGAT CGACTCGTTCCGGTTGTCGGTGATCGGCGGCGCATTGATGCGCATCACCCAGGGCGCGCATCCGTTTCTGCTGCCGCTGC TGTTTCAGATCGGCTTCGGCATGAGCGCTGCGCACAGCGGCCGCCTGATCCTGGCCACCGCGCTCGGCGCGTTGTTGATG CGCAGCATCACCCCGCAATTGCTGCGCCGCTTCGGTTATCGCAACAGCCTGATCGGCAACGGTGTGCTCGCCAGCCTGGG CTACATGGTGTGCGCGTTGTTCCGCCCCGATTGGCCGCCGGCGCTGATGTTCGGCCTGTTGCTGTGCTGCGGCGCCTTCA TGTCGTTCCAGTTCGCCGACTACAACACCATCGCCTACGAGAACGTGCCTGCCGCGTGCATGAGCCGCGCCAGCAGCCTG TATACGACCTTGCAGCAACTGATGCTCTCGGTGGGCGTGTGCGCCGGTGCGATGATCCTCAAACTGGCGATGCTGGCCGG CGATCACAGCCAGCCTGCGCAACGCGATTTCTCGCTGGCGTTCTGCGTGGTCAGCCTGATCTCGCTCAGCGCCACCTGGT GGCATCTGCGCTTCGACAAGCATGCCGGGCAGGAAATGAGCGGGCATCGGGCGTGA
Upstream 100 bases:
>100_bases CATGTTGCGCCGCACAACACCGTGCGACGCGGGCCGACCCTGCAGTCGTCTGCGACGCAGGCGGCGCGGCCCCGCAACCG AGAGTCCGATGTCCTCCAGC
Downstream 100 bases:
>100_bases GGTAAGGGGAGATATCGCTGACGCTCCAGCCGAGCCGCTTCGGCTGTGTGACGAACCCAACTCCAACCTCTTCTTGCGTG CTGCATCAAGCAGACGACTA
Product: drug resistance translocase
Products: Proton [Cytoplasm]; drug [Periplasm] [C]
Alternate protein names: High-copy suppressor of rspA [H]
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MSEAGATPPRYPDYRIISLILACAIFMEQMDATVLATALPTLARDFGVAAPAMSIAMTSYLLALAVLIPASGAIADRFGL RRVFGASIWVFVGGSILCSLADSLPTMVAARVLQGAGGAMMAPLGRLILLRTVERRHLVSAMAWTLVPAFIGPMLGPPLG GFFVSYLDWRWIFYINVPIGIAGFLLVRRFIPEIPTESGPARFDLRGFVLCGTALGCLLFGLEMVSQQNGIGTASWLLAI GGSAALGYLWHARHHPAPLLDLSLLRIDSFRLSVIGGALMRITQGAHPFLLPLLFQIGFGMSAAHSGRLILATALGALLM RSITPQLLRRFGYRNSLIGNGVLASLGYMVCALFRPDWPPALMFGLLLCCGAFMSFQFADYNTIAYENVPAACMSRASSL YTTLQQLMLSVGVCAGAMILKLAMLAGDHSQPAQRDFSLAFCVVSLISLSATWWHLRFDKHAGQEMSGHRA
Sequences:
>Translated_471_residues MSEAGATPPRYPDYRIISLILACAIFMEQMDATVLATALPTLARDFGVAAPAMSIAMTSYLLALAVLIPASGAIADRFGL RRVFGASIWVFVGGSILCSLADSLPTMVAARVLQGAGGAMMAPLGRLILLRTVERRHLVSAMAWTLVPAFIGPMLGPPLG GFFVSYLDWRWIFYINVPIGIAGFLLVRRFIPEIPTESGPARFDLRGFVLCGTALGCLLFGLEMVSQQNGIGTASWLLAI GGSAALGYLWHARHHPAPLLDLSLLRIDSFRLSVIGGALMRITQGAHPFLLPLLFQIGFGMSAAHSGRLILATALGALLM RSITPQLLRRFGYRNSLIGNGVLASLGYMVCALFRPDWPPALMFGLLLCCGAFMSFQFADYNTIAYENVPAACMSRASSL YTTLQQLMLSVGVCAGAMILKLAMLAGDHSQPAQRDFSLAFCVVSLISLSATWWHLRFDKHAGQEMSGHRA >Mature_470_residues SEAGATPPRYPDYRIISLILACAIFMEQMDATVLATALPTLARDFGVAAPAMSIAMTSYLLALAVLIPASGAIADRFGLR RVFGASIWVFVGGSILCSLADSLPTMVAARVLQGAGGAMMAPLGRLILLRTVERRHLVSAMAWTLVPAFIGPMLGPPLGG FFVSYLDWRWIFYINVPIGIAGFLLVRRFIPEIPTESGPARFDLRGFVLCGTALGCLLFGLEMVSQQNGIGTASWLLAIG GSAALGYLWHARHHPAPLLDLSLLRIDSFRLSVIGGALMRITQGAHPFLLPLLFQIGFGMSAAHSGRLILATALGALLMR SITPQLLRRFGYRNSLIGNGVLASLGYMVCALFRPDWPPALMFGLLLCCGAFMSFQFADYNTIAYENVPAACMSRASSLY TTLQQLMLSVGVCAGAMILKLAMLAGDHSQPAQRDFSLAFCVVSLISLSATWWHLRFDKHAGQEMSGHRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI1790195, Length=451, Percent_Identity=36.8070953436807, Blast_Score=286, Evalue=2e-78, Organism=Escherichia coli, GI1788392, Length=408, Percent_Identity=37.0098039215686, Blast_Score=228, Evalue=5e-61, Organism=Escherichia coli, GI87081983, Length=420, Percent_Identity=28.0952380952381, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1788710, Length=406, Percent_Identity=28.3251231527094, Blast_Score=121, Evalue=8e-29, Organism=Escherichia coli, GI1789042, Length=405, Percent_Identity=26.9135802469136, Blast_Score=112, Evalue=6e-26, Organism=Saccharomyces cerevisiae, GI6325455, Length=163, Percent_Identity=31.2883435582822, Blast_Score=79, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6321663, Length=153, Percent_Identity=31.3725490196078, Blast_Score=75, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322958, Length=233, Percent_Identity=26.6094420600858, Blast_Score=73, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 50706; Mature: 50575
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEAGATPPRYPDYRIISLILACAIFMEQMDATVLATALPTLARDFGVAAPAMSIAMTSY CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LLALAVLIPASGAIADRFGLRRVFGASIWVFVGGSILCSLADSLPTMVAARVLQGAGGAM HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH MAPLGRLILLRTVERRHLVSAMAWTLVPAFIGPMLGPPLGGFFVSYLDWRWIFYINVPIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEECCHH IAGFLLVRRFIPEIPTESGPARFDLRGFVLCGTALGCLLFGLEMVSQQNGIGTASWLLAI HHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH GGSAALGYLWHARHHPAPLLDLSLLRIDSFRLSVIGGALMRITQGAHPFLLPLLFQIGFG CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC MSAAHSGRLILATALGALLMRSITPQLLRRFGYRNSLIGNGVLASLGYMVCALFRPDWPP CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH ALMFGLLLCCGAFMSFQFADYNTIAYENVPAACMSRASSLYTTLQQLMLSVGVCAGAMIL HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLAMLAGDHSQPAQRDFSLAFCVVSLISLSATWWHLRFDKHAGQEMSGHRA HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECHHCCCCCCCCCC >Mature Secondary Structure SEAGATPPRYPDYRIISLILACAIFMEQMDATVLATALPTLARDFGVAAPAMSIAMTSY CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LLALAVLIPASGAIADRFGLRRVFGASIWVFVGGSILCSLADSLPTMVAARVLQGAGGAM HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH MAPLGRLILLRTVERRHLVSAMAWTLVPAFIGPMLGPPLGGFFVSYLDWRWIFYINVPIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEECCHH IAGFLLVRRFIPEIPTESGPARFDLRGFVLCGTALGCLLFGLEMVSQQNGIGTASWLLAI HHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH GGSAALGYLWHARHHPAPLLDLSLLRIDSFRLSVIGGALMRITQGAHPFLLPLLFQIGFG CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC MSAAHSGRLILATALGALLMRSITPQLLRRFGYRNSLIGNGVLASLGYMVCALFRPDWPP CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH ALMFGLLLCCGAFMSFQFADYNTIAYENVPAACMSRASSLYTTLQQLMLSVGVCAGAMIL HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLAMLAGDHSQPAQRDFSLAFCVVSLISLSATWWHLRFDKHAGQEMSGHRA HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; drug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + drug [Cytoplasm] = Proton [Cytoplasm] + drug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7686882; 9278503 [H]