| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is ybaP [C]
Identifier: 21243137
GI number: 21243137
Start: 2799026
End: 2800000
Strand: Reverse
Name: ybaP [C]
Synonym: XAC2403
Alternate gene names: 21243137
Gene position: 2800000-2799026 (Counterclockwise)
Preceding gene: 21243138
Following gene: 21243133
Centisome position: 54.1
GC content: 68.0
Gene sequence:
>975_bases TTGACCGGGCGACGGACGACGTCGAAACGCCAACGGGTTGCCGCCTGGTGCGGCGGCGCGCTGCTCGGCCTGGCCTTGTG GAGCGGGGCGCTCGTGCCGGTGTGGGCGCGCGGTGCCGGCGACGCGCCGGCGGGCCCGCCGGTGCCGCTGCTGTGGAAGG TCGATGGCAAGGGTGGCACGCTGTATCTGCTGGGCTCGTTTCATGTGCTCAAGCCCAGCGACTATCCGCTATCGCCGGAT GTGATGCAGGCCTTCGCCAGGGCCGACCGCCTGCTGTTCGAGTTGCCGCCTGACGATGCGCAATCGCCCGAGCTGGCCGG TCGCATGTTGCAGGCGGCGCGGCGCACCGACGGGCGTACGCTGCAAGACACGCTGGATGCGAAGACTTGGCAGGCGCTGA GCGCCTACGCGCGCAAGTACGGCATGTCGCTGGCGAGCCTGCAGCCGCTCGAGCCCTGGTTCGTGGCGCTGACGATCAGC CTGGCGGAGATGACCCGGCAAGGCATGGACCCGAACGCGGGGCTGGACCATTACCTGATGGAACAGGCGCAGGCGCGCGG CAAACCGGCCGACGGCCTGGAACGCGCCGCCGAGCAAATCGCCTTGCTCGATGGCATGTCGCCGACCGAGCAGCATCAGT TGCTGGAAGAATCGCTGGAAGAGGCCGATGCCTCCGACCAGCTACGCCAGCTGCATGCAGCCTGGCGCAATGGCGATGTG CATACGCTGTCCACGCAGATGGCCGACGACATGCGCCGCCAGTATCCGGCGCTGTATCAGGACATCAACGTCGAGCGCAA TGCGCGCTGGGTGCCGCGGCTGGAACAGCGGCTCGGCAAAGGCAGCGGGACCACGCTGGTGGTGGTCGGTGCGCTGCATT TACTAGGCAATGACGGGGTAGTGGAGCGTCTGCGTGTTCGCGGCTACCACGTGGAGCGCATCTGCTCGGCCTGCACAACG CAGGCCGGCCACTGA
Upstream 100 bases:
>100_bases GCCACCGGAAAACCGCATCGATCTGGCGGTGTCGGCAGGCGAGAAGGCCTACAAGGTGCCGCACTGACATGCGCGACATT CACACGCGCGGAGAAGCCTC
Downstream 100 bases:
>100_bases TCGGCTGCGCCTGGGAGCGTGACGCTCCTGGCGCAGCGTTCGATGTTTGGAAGGGTCGACACCACAGAGCGACCAGCCGT CAGCTGGCATTGCCCGCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: GumN Protein; Gumn Family Protein; SLA2 Protein; GumN-Family Protein; GumN Protein Superfamily; Secreted Protein; Lipoprotein
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MTGRRTTSKRQRVAAWCGGALLGLALWSGALVPVWARGAGDAPAGPPVPLLWKVDGKGGTLYLLGSFHVLKPSDYPLSPD VMQAFARADRLLFELPPDDAQSPELAGRMLQAARRTDGRTLQDTLDAKTWQALSAYARKYGMSLASLQPLEPWFVALTIS LAEMTRQGMDPNAGLDHYLMEQAQARGKPADGLERAAEQIALLDGMSPTEQHQLLEESLEEADASDQLRQLHAAWRNGDV HTLSTQMADDMRRQYPALYQDINVERNARWVPRLEQRLGKGSGTTLVVVGALHLLGNDGVVERLRVRGYHVERICSACTT QAGH
Sequences:
>Translated_324_residues MTGRRTTSKRQRVAAWCGGALLGLALWSGALVPVWARGAGDAPAGPPVPLLWKVDGKGGTLYLLGSFHVLKPSDYPLSPD VMQAFARADRLLFELPPDDAQSPELAGRMLQAARRTDGRTLQDTLDAKTWQALSAYARKYGMSLASLQPLEPWFVALTIS LAEMTRQGMDPNAGLDHYLMEQAQARGKPADGLERAAEQIALLDGMSPTEQHQLLEESLEEADASDQLRQLHAAWRNGDV HTLSTQMADDMRRQYPALYQDINVERNARWVPRLEQRLGKGSGTTLVVVGALHLLGNDGVVERLRVRGYHVERICSACTT QAGH >Mature_323_residues TGRRTTSKRQRVAAWCGGALLGLALWSGALVPVWARGAGDAPAGPPVPLLWKVDGKGGTLYLLGSFHVLKPSDYPLSPDV MQAFARADRLLFELPPDDAQSPELAGRMLQAARRTDGRTLQDTLDAKTWQALSAYARKYGMSLASLQPLEPWFVALTISL AEMTRQGMDPNAGLDHYLMEQAQARGKPADGLERAAEQIALLDGMSPTEQHQLLEESLEEADASDQLRQLHAAWRNGDVH TLSTQMADDMRRQYPALYQDINVERNARWVPRLEQRLGKGSGTTLVVVGALHLLGNDGVVERLRVRGYHVERICSACTTQ AGH
Specific function: Unknown
COG id: COG3735
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786689, Length=253, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35553; Mature: 35422
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGRRTTSKRQRVAAWCGGALLGLALWSGALVPVWARGAGDAPAGPPVPLLWKVDGKGGT CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCE LYLLGSFHVLKPSDYPLSPDVMQAFARADRLLFELPPDDAQSPELAGRMLQAARRTDGRT EEEEECEEEECCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHCCCCH LQDTLDAKTWQALSAYARKYGMSLASLQPLEPWFVALTISLAEMTRQGMDPNAGLDHYLM HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH EQAQARGKPADGLERAAEQIALLDGMSPTEQHQLLEESLEEADASDQLRQLHAAWRNGDV HHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCE HTLSTQMADDMRRQYPALYQDINVERNARWVPRLEQRLGKGSGTTLVVVGALHLLGNDGV EEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCH VERLRVRGYHVERICSACTTQAGH HHHHHHCCCCHHHHHHHHHCCCCC >Mature Secondary Structure TGRRTTSKRQRVAAWCGGALLGLALWSGALVPVWARGAGDAPAGPPVPLLWKVDGKGGT CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCE LYLLGSFHVLKPSDYPLSPDVMQAFARADRLLFELPPDDAQSPELAGRMLQAARRTDGRT EEEEECEEEECCCCCCCCHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHCCCCH LQDTLDAKTWQALSAYARKYGMSLASLQPLEPWFVALTISLAEMTRQGMDPNAGLDHYLM HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH EQAQARGKPADGLERAAEQIALLDGMSPTEQHQLLEESLEEADASDQLRQLHAAWRNGDV HHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCE HTLSTQMADDMRRQYPALYQDINVERNARWVPRLEQRLGKGSGTTLVVVGALHLLGNDGV EEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCH VERLRVRGYHVERICSACTTQAGH HHHHHHCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA