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The map label for this gene is pel

Identifier: 21243107

GI number: 21243107

Start: 2765321

End: 2766625

Strand: Direct

Name: pel

Synonym: XAC2373

Alternate gene names: NA

Gene position: 2765321-2766625 (Clockwise)

Preceding gene: 21243104

Following gene: 21243108

Centisome position: 53.43

GC content: 46.97

Gene sequence:

>1305_bases
GTGATCCGTGGAACTCCCACGCAAAGCGCCAGAAATGGCGAAATTCCGAGGATTCAAACGCCACTCTTCGGAACGACGCG
ACATCCCGCACTCTCAGGCCTCGTTGTTCAGACCCTCCCTAGAGATTCTACATACATTTTTCTCTTTGCAATAAAGATCC
GAATTTTGCATTTACATTTACCTACTATCTCGCTGTTTTTTGCCATTTTTATCACACAGGCTGGTATCGCCAATGCTGAT
ACCGGAGGATTTTCTTCTGCATCTGTATCTGGCGAAACTGCCATTACAGTGACAACACTTGCAGAGCTGCAAACGGCACT
CAATGCCAAAAGTCACCATATCATCATCCGTGGAAAGATCTACGGCGGCCCCAAATTGACTACCCTGAATTTCTCCAGCA
CTATTTGGAACAACATAACAATCGAGGGTGCTGCAGGCGGTGGAGCGGCCTTGCAGAATATCCAATTGAAATTTAGCGGC
GAGAACTTGCCCGCCGGGATAAACATTCAGAATGTGGTTATCAGAAACATCTCATTCTCTGGCAATATCGGCGACTTGCA
AGCCCTGCCTGACCAGGTCAAAGGAACGTCCAACAACACTGGCATCAACTACGTAGGCGTATCATTGCGGCGTATATCCA
ATGCTTGGATCGACCATTGCGATTTCTATGATATTAGCGATGACCTTTTATCAGTCGGCATGTCATCTAATTACGTCACG
CTGTCGTACAATCACTTTTACTTCAGTAACAGCTGGGTCAACATGAATCCGGATCCGGTATGGAACTGGGTCGAAAAAAA
TTACCATGACCTCGCAAATGAGCGCTTAGCAATCCTTATTGGTCACAACAAGAAAGATTCATATGTATATGGCGGCAATA
AGCTGCACGTAACGCTGCACCACAACTGGTTTGGCCCCAATCTTGCCGGGCGCCCCTTACTGCGTGGCTGGGTGCATGCC
TATAATAATTACTTTGACAATAGCACATCACCTAATGGTGAGCGAACCGCTGCCGATGGTCGCGGCTATGAAAAGCAGCA
GTACAACGCTTTGCAGGTAGGTAGCGGCAGTATTGTTTTTTCCGAATCAAACTATTTCTACAAAACCAACAATAGCAACC
AGATTCGACTAGAATCAGACGGTGACATGTACAATTTTTACGAAAAAGAAAACGTTTATGACGCAGTAACAGGCAATTCG
GCGATCGGCTCAACCTTCAATAATGCACCAGTCAAATACAGCTACGAGCCTGATGATTCGGCAAGAGTCCCCGGAATCGT
TCGGTCCTCTGCGGGGCCGCACTAA

Upstream 100 bases:

>100_bases
AGATCTACTTATGCGGTGTCTGCGGATCGGGGGAGCTTACGGAGTCGACACTGTGGATGAAGCGAAAGCAGTTACTGCCT
GCTATGGGGAGCGTGCGCCT

Downstream 100 bases:

>100_bases
ACACGATTTCTCCAGCATTCACCGCGCACCAGAAAGAGGCGCCTAAAGAATGTTTGAGGGGCCCCATATATTCAAGGCCA
GGGAAGGCATTAACAACTCA

Product: degenerated pectate lyase

Products: NA

Alternate protein names: Pectate Lyase; Degenerated Pectate Lyase

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MIRGTPTQSARNGEIPRIQTPLFGTTRHPALSGLVVQTLPRDSTYIFLFAIKIRILHLHLPTISLFFAIFITQAGIANAD
TGGFSSASVSGETAITVTTLAELQTALNAKSHHIIIRGKIYGGPKLTTLNFSSTIWNNITIEGAAGGGAALQNIQLKFSG
ENLPAGINIQNVVIRNISFSGNIGDLQALPDQVKGTSNNTGINYVGVSLRRISNAWIDHCDFYDISDDLLSVGMSSNYVT
LSYNHFYFSNSWVNMNPDPVWNWVEKNYHDLANERLAILIGHNKKDSYVYGGNKLHVTLHHNWFGPNLAGRPLLRGWVHA
YNNYFDNSTSPNGERTAADGRGYEKQQYNALQVGSGSIVFSESNYFYKTNNSNQIRLESDGDMYNFYEKENVYDAVTGNS
AIGSTFNNAPVKYSYEPDDSARVPGIVRSSAGPH

Sequences:

>Translated_434_residues
MIRGTPTQSARNGEIPRIQTPLFGTTRHPALSGLVVQTLPRDSTYIFLFAIKIRILHLHLPTISLFFAIFITQAGIANAD
TGGFSSASVSGETAITVTTLAELQTALNAKSHHIIIRGKIYGGPKLTTLNFSSTIWNNITIEGAAGGGAALQNIQLKFSG
ENLPAGINIQNVVIRNISFSGNIGDLQALPDQVKGTSNNTGINYVGVSLRRISNAWIDHCDFYDISDDLLSVGMSSNYVT
LSYNHFYFSNSWVNMNPDPVWNWVEKNYHDLANERLAILIGHNKKDSYVYGGNKLHVTLHHNWFGPNLAGRPLLRGWVHA
YNNYFDNSTSPNGERTAADGRGYEKQQYNALQVGSGSIVFSESNYFYKTNNSNQIRLESDGDMYNFYEKENVYDAVTGNS
AIGSTFNNAPVKYSYEPDDSARVPGIVRSSAGPH
>Mature_434_residues
MIRGTPTQSARNGEIPRIQTPLFGTTRHPALSGLVVQTLPRDSTYIFLFAIKIRILHLHLPTISLFFAIFITQAGIANAD
TGGFSSASVSGETAITVTTLAELQTALNAKSHHIIIRGKIYGGPKLTTLNFSSTIWNNITIEGAAGGGAALQNIQLKFSG
ENLPAGINIQNVVIRNISFSGNIGDLQALPDQVKGTSNNTGINYVGVSLRRISNAWIDHCDFYDISDDLLSVGMSSNYVT
LSYNHFYFSNSWVNMNPDPVWNWVEKNYHDLANERLAILIGHNKKDSYVYGGNKLHVTLHHNWFGPNLAGRPLLRGWVHA
YNNYFDNSTSPNGERTAADGRGYEKQQYNALQVGSGSIVFSESNYFYKTNNSNQIRLESDGDMYNFYEKENVYDAVTGNS
AIGSTFNNAPVKYSYEPDDSARVPGIVRSSAGPH

Specific function: Unknown

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47757; Mature: 47757

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRGTPTQSARNGEIPRIQTPLFGTTRHPALSGLVVQTLPRDSTYIFLFAIKIRILHLHL
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEEEC
PTISLFFAIFITQAGIANADTGGFSSASVSGETAITVTTLAELQTALNAKSHHIIIRGKI
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCEEEEEEEE
YGGPKLTTLNFSSTIWNNITIEGAAGGGAALQNIQLKFSGENLPAGINIQNVVIRNISFS
ECCCEEEEEECCHHCCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEEEC
GNIGDLQALPDQVKGTSNNTGINYVGVSLRRISNAWIDHCDFYDISDDLLSVGMSSNYVT
CCCCCHHHCCHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEE
LSYNHFYFSNSWVNMNPDPVWNWVEKNYHDLANERLAILIGHNKKDSYVYGGNKLHVTLH
EEEEEEEEECCEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCEEEEEEE
HNWFGPNLAGRPLLRGWVHAYNNYFDNSTSPNGERTAADGRGYEKQQYNALQVGSGSIVF
ECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCEEEECCCEEEE
SESNYFYKTNNSNQIRLESDGDMYNFYEKENVYDAVTGNSAIGSTFNNAPVKYSYEPDDS
ECCCEEEEECCCCEEEECCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEECCCCC
ARVPGIVRSSAGPH
CCCCEEEECCCCCC
>Mature Secondary Structure
MIRGTPTQSARNGEIPRIQTPLFGTTRHPALSGLVVQTLPRDSTYIFLFAIKIRILHLHL
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEEEC
PTISLFFAIFITQAGIANADTGGFSSASVSGETAITVTTLAELQTALNAKSHHIIIRGKI
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCEEEEEEEE
YGGPKLTTLNFSSTIWNNITIEGAAGGGAALQNIQLKFSGENLPAGINIQNVVIRNISFS
ECCCEEEEEECCHHCCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEEEC
GNIGDLQALPDQVKGTSNNTGINYVGVSLRRISNAWIDHCDFYDISDDLLSVGMSSNYVT
CCCCCHHHCCHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEE
LSYNHFYFSNSWVNMNPDPVWNWVEKNYHDLANERLAILIGHNKKDSYVYGGNKLHVTLH
EEEEEEEEECCEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCCEEEEEEE
HNWFGPNLAGRPLLRGWVHAYNNYFDNSTSPNGERTAADGRGYEKQQYNALQVGSGSIVF
ECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCEEEECCCEEEE
SESNYFYKTNNSNQIRLESDGDMYNFYEKENVYDAVTGNSAIGSTFNNAPVKYSYEPDDS
ECCCEEEEECCCCEEEECCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEECCCCC
ARVPGIVRSSAGPH
CCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA