Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 21243071

GI number: 21243071

Start: 2730540

End: 2732162

Strand: Direct

Name: cydA [H]

Synonym: XAC2336

Alternate gene names: 21243071

Gene position: 2730540-2732162 (Clockwise)

Preceding gene: 21243068

Following gene: 21243072

Centisome position: 52.76

GC content: 61.43

Gene sequence:

>1623_bases
ATGATCGACTCGACAGTTGTCGAATTGTCGCGGCTGCAGTTCGCAGTCACCGCGATGTACCACTTCATCTTTCCGCCGCT
CACCATGGGTCTGTCGTTCCTGCTGGGCATCATGGAAAGCGTCTACGTCATGACCGGCAAGCAGATCTGGCGGCGCATGA
CCATGTTCTGGGGCGTGCTGTTCGGCATCAACTTCGCCATGGGTGTCGGCACCGGCATCGTGATGGAGTTCGAGTTCGGC
ATGAACTGGTCGTACTACAGCCATTACGTGGGCGACATCTTCGGTGCCCCGCTGGCGATCGAGGGACTGATGGCGTTCTT
TCTGGAAGCCACCTTTTTGGGCCTGTTCTTTCTTGGCTGGAATCGCCTGAGCAAGGTGCAGCACCTGGTCACCACCTGGC
TGGTGGCGCTGGGCAGCAACTTCTCCGCGTTATGGATCCTGATCGCCAACGGCTGGATGCAGAATCCGGCCGGCGCGGTA
TTCAACCCGGACACCATGCGCATGGAAGTGGTGGATTTCGTGGCGGTGCTGTTCAACCCGGTGGCGCAAGCCAAGTTCGT
GCATACCGTCAGCGCAGGCTACGTGCTGGGCGCGGTGTTCGTGATGTCGATCAGTGCGTTTTATCTATTGCGCGGCAAGC
ATATTGAAATGGCGCGGCGTTCGTTTGCGGTGGCCGCAGCGTTCGGTCTGCTGTCGTCGCTGTCGGTGGTGGTGCTGGGC
GACGAGAGCGGCTACGCCGCCAGTGAACACCAGAAGATGAAACTGGCCGCCATCGAAGCGATGTGGGAAACCGAAGCTGC
GCCGGCCGACTTCACCGCGTTCGGCATTCCGAACCAGACCACCCATCGCAACGATTACGCCATCAAGATTCCGTACCTGA
TGGGATTGATCGCCACGCGTTCGCTGGACGAGCCAATTCCAGGCATTCTCGAATTGGTGGGCCGTGCCGAACACCGCATC
CGCGGCGGTCAAATCGCCTACGGCGCACTGCAACGCATCCGCGCCGACAGGAACGATGCCCAAGCGCGCAAGGTTTTCGA
TGCGCATTGGCAGGACCTGGGCCACGGCCTGCTGCTCAAGCGCTACCGCGACGATATCGGCAATGCAACGCCGGAGCAGA
TTGCCCAGGCCGCGATGGACACCGTGCCGCGCGTGCTGCCGCTGTTCTGGACCTTCCGCATCATGGCCGCCATCGGCATG
TATCTCATCGCGTTTTTCGCTGTCGCCTTCTGGCTTGCCTGCAAGCACAACTTCCAGGAAAAACGCTGGTTCCTGACCTT
GGCCCTGTGGACGTTGCCGCTGCCCTGGATCGCGATCGAATGCGGTTGGTTCGTTGCCGAATACGGCCGCCAGCCGTGGG
CGGTGGAAGGCGTGCTGCCCACGTTCTACGCCGCTTCCGGGCTGGATCTGTACGAGATCGTGCTGACGCTGGTGGGCTTC
ACCGCGCTGTACACCACGCTACTGGTGATTGCGATCAAGTTGTCGCTGAAGACCATCAACAAGGGCCCGGATGTGCTGTT
CCCGCCGATGCTGCCCAACGCATCGCCCGCCGCCCTGCAAGACCATGCCCCGTCGCGTCACGCACCGCTGAGTCCCGGTG
CCGTGGCCGGCAGCGCACCGTAA

Upstream 100 bases:

>100_bases
GCACCTGTCCAGGGCCGCATTGATTTGGATCAACGCGGCCGGCGCGATCGCGGCAGATGATCGCCACATTCCTTACCGAC
CCTCAACCAGGCCACCCGCC

Downstream 100 bases:

>100_bases
GCGAAGGAGAAACATCATGGATTTCGTATTGCTCGATTACACAACCCTGCGCGTGATCTGGTGGCTGCTGCTCGGCGTGC
TGCTGTCCGGTTACGCGGTG

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MIDSTVVELSRLQFAVTAMYHFIFPPLTMGLSFLLGIMESVYVMTGKQIWRRMTMFWGVLFGINFAMGVGTGIVMEFEFG
MNWSYYSHYVGDIFGAPLAIEGLMAFFLEATFLGLFFLGWNRLSKVQHLVTTWLVALGSNFSALWILIANGWMQNPAGAV
FNPDTMRMEVVDFVAVLFNPVAQAKFVHTVSAGYVLGAVFVMSISAFYLLRGKHIEMARRSFAVAAAFGLLSSLSVVVLG
DESGYAASEHQKMKLAAIEAMWETEAAPADFTAFGIPNQTTHRNDYAIKIPYLMGLIATRSLDEPIPGILELVGRAEHRI
RGGQIAYGALQRIRADRNDAQARKVFDAHWQDLGHGLLLKRYRDDIGNATPEQIAQAAMDTVPRVLPLFWTFRIMAAIGM
YLIAFFAVAFWLACKHNFQEKRWFLTLALWTLPLPWIAIECGWFVAEYGRQPWAVEGVLPTFYAASGLDLYEIVLTLVGF
TALYTTLLVIAIKLSLKTINKGPDVLFPPMLPNASPAALQDHAPSRHAPLSPGAVAGSAP

Sequences:

>Translated_540_residues
MIDSTVVELSRLQFAVTAMYHFIFPPLTMGLSFLLGIMESVYVMTGKQIWRRMTMFWGVLFGINFAMGVGTGIVMEFEFG
MNWSYYSHYVGDIFGAPLAIEGLMAFFLEATFLGLFFLGWNRLSKVQHLVTTWLVALGSNFSALWILIANGWMQNPAGAV
FNPDTMRMEVVDFVAVLFNPVAQAKFVHTVSAGYVLGAVFVMSISAFYLLRGKHIEMARRSFAVAAAFGLLSSLSVVVLG
DESGYAASEHQKMKLAAIEAMWETEAAPADFTAFGIPNQTTHRNDYAIKIPYLMGLIATRSLDEPIPGILELVGRAEHRI
RGGQIAYGALQRIRADRNDAQARKVFDAHWQDLGHGLLLKRYRDDIGNATPEQIAQAAMDTVPRVLPLFWTFRIMAAIGM
YLIAFFAVAFWLACKHNFQEKRWFLTLALWTLPLPWIAIECGWFVAEYGRQPWAVEGVLPTFYAASGLDLYEIVLTLVGF
TALYTTLLVIAIKLSLKTINKGPDVLFPPMLPNASPAALQDHAPSRHAPLSPGAVAGSAP
>Mature_540_residues
MIDSTVVELSRLQFAVTAMYHFIFPPLTMGLSFLLGIMESVYVMTGKQIWRRMTMFWGVLFGINFAMGVGTGIVMEFEFG
MNWSYYSHYVGDIFGAPLAIEGLMAFFLEATFLGLFFLGWNRLSKVQHLVTTWLVALGSNFSALWILIANGWMQNPAGAV
FNPDTMRMEVVDFVAVLFNPVAQAKFVHTVSAGYVLGAVFVMSISAFYLLRGKHIEMARRSFAVAAAFGLLSSLSVVVLG
DESGYAASEHQKMKLAAIEAMWETEAAPADFTAFGIPNQTTHRNDYAIKIPYLMGLIATRSLDEPIPGILELVGRAEHRI
RGGQIAYGALQRIRADRNDAQARKVFDAHWQDLGHGLLLKRYRDDIGNATPEQIAQAAMDTVPRVLPLFWTFRIMAAIGM
YLIAFFAVAFWLACKHNFQEKRWFLTLALWTLPLPWIAIECGWFVAEYGRQPWAVEGVLPTFYAASGLDLYEIVLTLVGF
TALYTTLLVIAIKLSLKTINKGPDVLFPPMLPNASPAALQDHAPSRHAPLSPGAVAGSAP

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=506, Percent_Identity=59.4861660079051, Blast_Score=630, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=501, Percent_Identity=52.2954091816367, Blast_Score=540, Evalue=1e-155,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59878; Mature: 59878

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]