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The map label for this gene is cydB [H]

Identifier: 21243072

GI number: 21243072

Start: 2732179

End: 2733330

Strand: Direct

Name: cydB [H]

Synonym: XAC2337

Alternate gene names: 21243072

Gene position: 2732179-2733330 (Clockwise)

Preceding gene: 21243071

Following gene: 21243073

Centisome position: 52.79

GC content: 65.28

Gene sequence:

>1152_bases
ATGGATTTCGTATTGCTCGATTACACAACCCTGCGCGTGATCTGGTGGCTGCTGCTCGGCGTGCTGCTGTCCGGTTACGC
GGTGATGGGCGGCTTCGATCTTGGCGTGGGCGCGCTGCTGCCGTTCGTCGCCAACAACGATGCCGAACGCCGGCTGGTGA
TCAATACCGTCGGCCCGGTCTGGGAAGGCAACCAGGTGTGGTTGATCCTGGGCGGCGGCGCGATCTTTGCAGCGTTCCCG
CCGTTGTACGCAGTGAGTTTCTCCGGGTTTTATCTGGCGATGTTCCTGATCCTGTTCGCGCTGATCCTGCGCCCGGTCGG
TTTCAAGTTCCGCGGCAAGCTGGCGAGTGCACGCTGGCGCAGCAATTGGGACTGGGCGTTGTTCGTCGGCGGTTTCATTC
CGGCACTGATCATGGGCGTGGCGGTCGGCAATGTGCTGCTGGGGGTGCCGTTCCATTTCGACGACAGCATGCGCACGTTC
TACACCGGCAACCTGTTGGGGCTGCTGACGCCGTTCGCGTTGCTCGCCGGCTTGCTCAGCGTGGCGATGCTGCTGGCGCA
TGGCGCCGCGATGCTGGTGCTCAAGACCGATGGCCCGGTGGCCGCGCGCGCGGCGCGGTTCGGCAGCAGCGCTGCGCTGT
GTGCGCTGGCACTGTTTGCAGCGGGCGGCGCATGGGTGGCGCTGGGTCTGCCCGGCTATGCGGTGACATCGTTGCTGGCG
ACCGACGCGGCCACCAACCCGCTCGGCAAGACCGCTGCGCTCACCGCCGCGGGCGGCTGGTTGCACAACTACAGCAGCAT
GCCGGCCACGTTGATGGCGCCGCTGGTGGGCCTGGTCGGGCTTGCGATGAGCGCGGTGTTGTTACGCGTGCGCCGCGGTG
GCCTGGCCTTCATCGCCTCCGGCAGCGCCATCGTCGGCATCGTGTTCACGGTGGGCTTTGCGTTGTTTCCGTTCCTGCTG
CCCTCCTCCGCGGCGCCAAGCATGAGCCTGACGTTGTGGGATGCATCCAGCAGCCGTCTGACGTTGTGGATCATGTTGCT
GGCCACTGCCGTGTTCATGCCGATCGTGCTGGCGTACACCAGCTGGGTATATCGCGTGCTCAAGGGCAAGGTCACCGACG
ATGCGGTCACGGCCAATCCCAACGCGTACTGA

Upstream 100 bases:

>100_bases
GCATCGCCCGCCGCCCTGCAAGACCATGCCCCGTCGCGTCACGCACCGCTGAGTCCCGGTGCCGTGGCCGGCAGCGCACC
GTAAGCGAAGGAGAAACATC

Downstream 100 bases:

>100_bases
GCGCCGCGGCAGCGATCGCAATGCCTGCGCTGCCGTTGACGCACCGCGCGCGCCCATCTTTTTCAACGATTCGAGGAGCA
CACCAATGTGGTATTTCGCA

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MDFVLLDYTTLRVIWWLLLGVLLSGYAVMGGFDLGVGALLPFVANNDAERRLVINTVGPVWEGNQVWLILGGGAIFAAFP
PLYAVSFSGFYLAMFLILFALILRPVGFKFRGKLASARWRSNWDWALFVGGFIPALIMGVAVGNVLLGVPFHFDDSMRTF
YTGNLLGLLTPFALLAGLLSVAMLLAHGAAMLVLKTDGPVAARAARFGSSAALCALALFAAGGAWVALGLPGYAVTSLLA
TDAATNPLGKTAALTAAGGWLHNYSSMPATLMAPLVGLVGLAMSAVLLRVRRGGLAFIASGSAIVGIVFTVGFALFPFLL
PSSAAPSMSLTLWDASSSRLTLWIMLLATAVFMPIVLAYTSWVYRVLKGKVTDDAVTANPNAY

Sequences:

>Translated_383_residues
MDFVLLDYTTLRVIWWLLLGVLLSGYAVMGGFDLGVGALLPFVANNDAERRLVINTVGPVWEGNQVWLILGGGAIFAAFP
PLYAVSFSGFYLAMFLILFALILRPVGFKFRGKLASARWRSNWDWALFVGGFIPALIMGVAVGNVLLGVPFHFDDSMRTF
YTGNLLGLLTPFALLAGLLSVAMLLAHGAAMLVLKTDGPVAARAARFGSSAALCALALFAAGGAWVALGLPGYAVTSLLA
TDAATNPLGKTAALTAAGGWLHNYSSMPATLMAPLVGLVGLAMSAVLLRVRRGGLAFIASGSAIVGIVFTVGFALFPFLL
PSSAAPSMSLTLWDASSSRLTLWIMLLATAVFMPIVLAYTSWVYRVLKGKVTDDAVTANPNAY
>Mature_383_residues
MDFVLLDYTTLRVIWWLLLGVLLSGYAVMGGFDLGVGALLPFVANNDAERRLVINTVGPVWEGNQVWLILGGGAIFAAFP
PLYAVSFSGFYLAMFLILFALILRPVGFKFRGKLASARWRSNWDWALFVGGFIPALIMGVAVGNVLLGVPFHFDDSMRTF
YTGNLLGLLTPFALLAGLLSVAMLLAHGAAMLVLKTDGPVAARAARFGSSAALCALALFAAGGAWVALGLPGYAVTSLLA
TDAATNPLGKTAALTAAGGWLHNYSSMPATLMAPLVGLVGLAMSAVLLRVRRGGLAFIASGSAIVGIVFTVGFALFPFLL
PSSAAPSMSLTLWDASSSRLTLWIMLLATAVFMPIVLAYTSWVYRVLKGKVTDDAVTANPNAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=46.5608465608466, Blast_Score=361, Evalue=1e-101,
Organism=Escherichia coli, GI1787213, Length=380, Percent_Identity=46.8421052631579, Blast_Score=337, Evalue=6e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 40392; Mature: 40392

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFVLLDYTTLRVIWWLLLGVLLSGYAVMGGFDLGVGALLPFVANNDAERRLVINTVGPV
CCEEEECHHHHHHHHHHHHHHHHCCHHHCCCCHHCHHHHHHHHCCCCCCCEEEEEECCCC
WEGNQVWLILGGGAIFAAFPPLYAVSFSGFYLAMFLILFALILRPVGFKFRGKLASARWR
CCCCEEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHCHHC
SNWDWALFVGGFIPALIMGVAVGNVLLGVPFHFDDSMRTFYTGNLLGLLTPFALLAGLLS
CCCCEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
VAMLLAHGAAMLVLKTDGPVAARAARFGSSAALCALALFAAGGAWVALGLPGYAVTSLLA
HHHHHHCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
TDAATNPLGKTAALTAAGGWLHNYSSMPATLMAPLVGLVGLAMSAVLLRVRRGGLAFIAS
HHCCCCCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
GSAIVGIVFTVGFALFPFLLPSSAAPSMSLTLWDASSSRLTLWIMLLATAVFMPIVLAYT
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
SWVYRVLKGKVTDDAVTANPNAY
HHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDFVLLDYTTLRVIWWLLLGVLLSGYAVMGGFDLGVGALLPFVANNDAERRLVINTVGPV
CCEEEECHHHHHHHHHHHHHHHHCCHHHCCCCHHCHHHHHHHHCCCCCCCEEEEEECCCC
WEGNQVWLILGGGAIFAAFPPLYAVSFSGFYLAMFLILFALILRPVGFKFRGKLASARWR
CCCCEEEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHCHHC
SNWDWALFVGGFIPALIMGVAVGNVLLGVPFHFDDSMRTFYTGNLLGLLTPFALLAGLLS
CCCCEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
VAMLLAHGAAMLVLKTDGPVAARAARFGSSAALCALALFAAGGAWVALGLPGYAVTSLLA
HHHHHHCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
TDAATNPLGKTAALTAAGGWLHNYSSMPATLMAPLVGLVGLAMSAVLLRVRRGGLAFIAS
HHCCCCCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
GSAIVGIVFTVGFALFPFLLPSSAAPSMSLTLWDASSSRLTLWIMLLATAVFMPIVLAYT
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
SWVYRVLKGKVTDDAVTANPNAY
HHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]