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The map label for this gene is yggB [C]

Identifier: 21242784

GI number: 21242784

Start: 2384048

End: 2385022

Strand: Reverse

Name: yggB [C]

Synonym: XAC2040

Alternate gene names: 21242784

Gene position: 2385022-2384048 (Counterclockwise)

Preceding gene: 21242785

Following gene: 21242780

Centisome position: 46.08

GC content: 62.56

Gene sequence:

>975_bases
ATGTGGGCGGCAGCTGCAGGAGCAGCTGCTGCAAAACCGGTTGCGGCAGCAGGAGCGGCAGCCGCGAAGCCGGCCGCGAC
CAGCGAGCCGGCCTTCAATTGGGCCGCCATCCCGTGGGCGCAGTACGCGGTCAATTGGGGGGTGGCACTGCTGATCGTCG
TGGTCGGCATGTGGCTGGCCCGGCAACTCAGTCAGTGGTTGCACCGCGCGCTTACCCGCGCACGCGTCGAGATCACGCTC
ACCAACTTCCTGCGCAACGTGATGTACGCGTTGTTGCTGGTGTTGGTGTTCGTCAGCGCGTTGAGTCAGATCGGTGTGCC
ACCGACCTCACTGATCGCAGTGCTCGGCGCAGCAGGCCTGGCGGTCGGCCTTGCGCTGAAGGATTCGCTGTCCAACATCG
CTGCTGGCGTGATGCTCATCGTGCTGCGGCCGATGCGCGATGGCGACCACGTATTGATTGCCGGCCAGGAAGGCATCGTC
GACGAGATCCGGATCTTCCAGACCAGGATCCGTTCGTTCGACGAACGCATGATCACCCTGCCAAACAGCACGATTACCAC
TGCCCCCATCGTCAACTACAGCACTTTGCCCAACCGCCGCCTGGAAGTGACGGTCGGCGTGGGCTATGAAGACGATCTGA
AGAAAGCGCAGCAGTTGTTGCTGCAGATCGCCAAGGACAACCCGAACATCCTGGAGTCGCCTGCACCATTCGTGCAGGTG
ACCAACCTGGGCGAGAGTACGGTCGACCTGATGTTGTTCGCGTATGCGACCAACGGCAACTTCGGCGCCGCCAAGAGCAC
CACGCTGGAGCAGATCCGCAACCAGTTGCTGGAAAACGGACTCAACATCCCCTACCCGCAGCGCGACCTGCACGTGTATC
ACCACGATGCCGATGGCAAGCCGATCTCCGGCCTGTTGCTGAAAGGCATCGCCGACGATGGCGACCTGAGCAAGGGGCCG
TCGCTGGCGCGTTGA

Upstream 100 bases:

>100_bases
AAGGAATCGAATCGGTGTCGTTGAATCCCGATACCGTGGTCGACACCTGGCTGCGTCTGGCCAAGCTCAAGAGCGAGGGC
TGATGGGACCGATGGGTGCA

Downstream 100 bases:

>100_bases
TGCGGCGTCCCCAGCATTACCGCAGTAGAAAAAACAGAGGCCGCATCGATTGATGCGGCCTTTTTGTGAGTGTGGATAGC
TCAGGCTCGTATGTGCGGGA

Product: small conductance mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MWAAAAGAAAAKPVAAAGAAAAKPAATSEPAFNWAAIPWAQYAVNWGVALLIVVVGMWLARQLSQWLHRALTRARVEITL
TNFLRNVMYALLLVLVFVSALSQIGVPPTSLIAVLGAAGLAVGLALKDSLSNIAAGVMLIVLRPMRDGDHVLIAGQEGIV
DEIRIFQTRIRSFDERMITLPNSTITTAPIVNYSTLPNRRLEVTVGVGYEDDLKKAQQLLLQIAKDNPNILESPAPFVQV
TNLGESTVDLMLFAYATNGNFGAAKSTTLEQIRNQLLENGLNIPYPQRDLHVYHHDADGKPISGLLLKGIADDGDLSKGP
SLAR

Sequences:

>Translated_324_residues
MWAAAAGAAAAKPVAAAGAAAAKPAATSEPAFNWAAIPWAQYAVNWGVALLIVVVGMWLARQLSQWLHRALTRARVEITL
TNFLRNVMYALLLVLVFVSALSQIGVPPTSLIAVLGAAGLAVGLALKDSLSNIAAGVMLIVLRPMRDGDHVLIAGQEGIV
DEIRIFQTRIRSFDERMITLPNSTITTAPIVNYSTLPNRRLEVTVGVGYEDDLKKAQQLLLQIAKDNPNILESPAPFVQV
TNLGESTVDLMLFAYATNGNFGAAKSTTLEQIRNQLLENGLNIPYPQRDLHVYHHDADGKPISGLLLKGIADDGDLSKGP
SLAR
>Mature_324_residues
MWAAAAGAAAAKPVAAAGAAAAKPAATSEPAFNWAAIPWAQYAVNWGVALLIVVVGMWLARQLSQWLHRALTRARVEITL
TNFLRNVMYALLLVLVFVSALSQIGVPPTSLIAVLGAAGLAVGLALKDSLSNIAAGVMLIVLRPMRDGDHVLIAGQEGIV
DEIRIFQTRIRSFDERMITLPNSTITTAPIVNYSTLPNRRLEVTVGVGYEDDLKKAQQLLLQIAKDNPNILESPAPFVQV
TNLGESTVDLMLFAYATNGNFGAAKSTTLEQIRNQLLENGLNIPYPQRDLHVYHHDADGKPISGLLLKGIADDGDLSKGP
SLAR

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=258, Percent_Identity=36.046511627907, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1786670, Length=226, Percent_Identity=29.2035398230088, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787591, Length=251, Percent_Identity=25.4980079681275, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367355, Length=242, Percent_Identity=23.5537190082645, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 34714; Mature: 34714

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWAAAAGAAAAKPVAAAGAAAAKPAATSEPAFNWAAIPWAQYAVNWGVALLIVVVGMWLA
CCCCCCCCHHCCCHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
RQLSQWLHRALTRARVEITLTNFLRNVMYALLLVLVFVSALSQIGVPPTSLIAVLGAAGL
HHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AVGLALKDSLSNIAAGVMLIVLRPMRDGDHVLIAGQEGIVDEIRIFQTRIRSFDERMITL
HHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEEC
PNSTITTAPIVNYSTLPNRRLEVTVGVGYEDDLKKAQQLLLQIAKDNPNILESPAPFVQV
CCCCCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
TNLGESTVDLMLFAYATNGNFGAAKSTTLEQIRNQLLENGLNIPYPQRDLHVYHHDADGK
ECCCCHHEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC
PISGLLLKGIADDGDLSKGPSLAR
CHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MWAAAAGAAAAKPVAAAGAAAAKPAATSEPAFNWAAIPWAQYAVNWGVALLIVVVGMWLA
CCCCCCCCHHCCCHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
RQLSQWLHRALTRARVEITLTNFLRNVMYALLLVLVFVSALSQIGVPPTSLIAVLGAAGL
HHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AVGLALKDSLSNIAAGVMLIVLRPMRDGDHVLIAGQEGIVDEIRIFQTRIRSFDERMITL
HHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEEC
PNSTITTAPIVNYSTLPNRRLEVTVGVGYEDDLKKAQQLLLQIAKDNPNILESPAPFVQV
CCCCCCCCCCEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
TNLGESTVDLMLFAYATNGNFGAAKSTTLEQIRNQLLENGLNIPYPQRDLHVYHHDADGK
ECCCCHHEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC
PISGLLLKGIADDGDLSKGPSLAR
CHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]