Click here to switch to the map view.

The map label for this gene is pilF

Identifier: 21242761

GI number: 21242761

Start: 2360135

End: 2360914

Strand: Direct

Name: pilF

Synonym: XAC2017

Alternate gene names: NA

Gene position: 2360135-2360914 (Clockwise)

Preceding gene: 21242760

Following gene: 21242762

Centisome position: 45.6

GC content: 63.97

Gene sequence:

>780_bases
GTGGCGATCGCGCTGAGCGCGGTCGGTTGCGGTGGTCGCAATGCCAAGGCCGGCTCGGCCAAGAGTGTGGAGGAAGTCGC
GCCGGTGTATTCGTTCCGCGACGACAAGGCCACCAAGAATCGCCTGGCCGTCCAGGAGAAATTGGGTCTGGCCCGCAACC
GGCTGCAGACCGGCGATTACGCCAGTGCCGAAGAGCAGGTGCGCGCCGCCTTGAAAAAGGACCCGCAGTCGGTGGATGCC
ATCGGCCTGCTGGCGCTGATTCAGGGCGCCAGGGGCGATGCGGCGGCAGCTGGTGCGTCGTACCGGCGGGCCGCAGAAAT
CGCGCCGCAACGCGGCGACGTGCTGAATAACTATGGCGCCTGGTTGTGCGCGAATGGCTCGCCCAGCGAAGCGTTGACCT
GGTTCGATCGCGCACTGGCCGACCGGACGTACGCTTCGCCTGCGTCTGCATTGGGCAATGCCGGCGGTTGCGCGCTTAAG
GCAGGACAGCCTGAGCGAGCAGCAGGCGATCTGCGCAAAGCGCTCGATCTAGACCCGAATAATCCGTATGCGCTCGAATC
GATGGCACGTCTGGAAGCCGGGCGCCGCAATTATTTCGAAGCCCGCGCTTTTATCGAACGCCGCCTTGCGGCTGCACCGG
CAACTGCTTCCGTGTTACAACTCGCCATTCAGATCGAGCAAGGGCTAGGCGACAAGGTAGCTGCCGGCCGTTACCAACAG
CGGTTGGTCAAGGAATTCCCTGACGCAGCGACCGCTACTCCCGGGGCCAATGCATTGTGA

Upstream 100 bases:

>100_bases
CAGGTCATGGACCGTACCCGTCGCCAGGCGGAGTTCCGCCGCACATTGGAAGGGCAGGCCGATCGAGATGCGGCAGCGTG
AACTCGCGTTAATGGCGGCC

Downstream 100 bases:

>100_bases
TCAGTGATTCCAATCCGAACCTTTTCGAGCAGGAAAAGGGCTGCGGACAGCATTTGCGCGAAGCGCGCGAGGCGGCAGGC
CTGAGTGTGGACGAGGTGGC

Product: fimbrial biogenesis protein

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; Fimbrial Biogenesis Protein; Fimbrial Biogenesis And Twitching Motility Protein; Type IV Pilus Assembly Protein PilF; Type IV Pilus Biogenesis Protein PilF; Tfp Pilus Assembly Protein PilF; PilF Type IV Pilus Assembly Protein; Type IV Pili Biogenesis Protein PilF; TPR Repeat-Containing Pilus Assembly Protein PilF; Fimbrial Biogenesis And Twitching Motility Protein PilF; Type Iv Pilus Biogenesis/Stability Protein Pilw; Type IV Fimbrial Biogenesis Protein; Tpr Repeat Protein; LysM Domain-Containing Protein; ATP-Dependent Protease La; Protein Involved In Fimbrial Biogenesis; TPR Domain-Containing Protein; Type IV Pilus Biogenesis Protein Pilf; Lipoprotein

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAIALSAVGCGGRNAKAGSAKSVEEVAPVYSFRDDKATKNRLAVQEKLGLARNRLQTGDYASAEEQVRAALKKDPQSVDA
IGLLALIQGARGDAAAAGASYRRAAEIAPQRGDVLNNYGAWLCANGSPSEALTWFDRALADRTYASPASALGNAGGCALK
AGQPERAAGDLRKALDLDPNNPYALESMARLEAGRRNYFEARAFIERRLAAAPATASVLQLAIQIEQGLGDKVAAGRYQQ
RLVKEFPDAATATPGANAL

Sequences:

>Translated_259_residues
MAIALSAVGCGGRNAKAGSAKSVEEVAPVYSFRDDKATKNRLAVQEKLGLARNRLQTGDYASAEEQVRAALKKDPQSVDA
IGLLALIQGARGDAAAAGASYRRAAEIAPQRGDVLNNYGAWLCANGSPSEALTWFDRALADRTYASPASALGNAGGCALK
AGQPERAAGDLRKALDLDPNNPYALESMARLEAGRRNYFEARAFIERRLAAAPATASVLQLAIQIEQGLGDKVAAGRYQQ
RLVKEFPDAATATPGANAL
>Mature_258_residues
AIALSAVGCGGRNAKAGSAKSVEEVAPVYSFRDDKATKNRLAVQEKLGLARNRLQTGDYASAEEQVRAALKKDPQSVDAI
GLLALIQGARGDAAAAGASYRRAAEIAPQRGDVLNNYGAWLCANGSPSEALTWFDRALADRTYASPASALGNAGGCALKA
GQPERAAGDLRKALDLDPNNPYALESMARLEAGRRNYFEARAFIERRLAAAPATASVLQLAIQIEQGLGDKVAAGRYQQR
LVKEFPDAATATPGANAL

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27158; Mature: 27027

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIALSAVGCGGRNAKAGSAKSVEEVAPVYSFRDDKATKNRLAVQEKLGLARNRLQTGDY
CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
ASAEEQVRAALKKDPQSVDAIGLLALIQGARGDAAAAGASYRRAAEIAPQRGDVLNNYGA
CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCCCHHHCCCC
WLCANGSPSEALTWFDRALADRTYASPASALGNAGGCALKAGQPERAAGDLRKALDLDPN
EEECCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCC
NPYALESMARLEAGRRNYFEARAFIERRLAAAPATASVLQLAIQIEQGLGDKVAAGRYQQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
RLVKEFPDAATATPGANAL
HHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AIALSAVGCGGRNAKAGSAKSVEEVAPVYSFRDDKATKNRLAVQEKLGLARNRLQTGDY
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
ASAEEQVRAALKKDPQSVDAIGLLALIQGARGDAAAAGASYRRAAEIAPQRGDVLNNYGA
CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCCCHHHCCCC
WLCANGSPSEALTWFDRALADRTYASPASALGNAGGCALKAGQPERAAGDLRKALDLDPN
EEECCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCC
NPYALESMARLEAGRRNYFEARAFIERRLAAAPATASVLQLAIQIEQGLGDKVAAGRYQQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
RLVKEFPDAATATPGANAL
HHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA