| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is paaF [C]
Identifier: 21242597
GI number: 21242597
Start: 2148671
End: 2149468
Strand: Reverse
Name: paaF [C]
Synonym: XAC1853
Alternate gene names: 21242597
Gene position: 2149468-2148671 (Counterclockwise)
Preceding gene: 21242615
Following gene: 21242596
Centisome position: 41.53
GC content: 68.55
Gene sequence:
>798_bases ATGCAGGACACCGGCTTGATTGTCGAAGACCACGGAGCGGTCCGCACCTTGCGATTGCATCGCCCCGCAGTCCACAACGC CTTCGATGCGACGCTGATCGCCGCGCTGACCGATGCATTGCGCGAGGCTGGCCGGGCCTCGCAGATCCGCATCGTCGTGC TGACCGGTGATGGCGCGGCCTTTTCGGCCGGCGCAGACCTGAACTGGATGCGCGGCATGGCCAGCGCCAACGAAGCGGAG AACGCCGCCGACGCACTGGCGCTGGCGCAGTTGATGCGCACCCTGGATGAACTGCCCAAGCCCACCATCGCGCGCGTCAA CGGGGCCGCCTTCGGCGGTGGTGTCGGCCTGGTGGCGTGTTGCGATATCGCCATCGGTTGTACCGAGGCGCGCTTCGGCC TGACCGAGAGCAAGCTCGGCCTGCTGCCGGCGGTCATTTCGCCTTATGTGGTTGCAGCGATCGGTGCGCGCCAGGCGCGG CGCTGGTTCGCAACCGCCGAGATCTTCGATGCCGGCACCGCGCAGTTGCTGGGTCTGCTGCACCAACTGGTGGCCGCCGA TCAGCTGGATATCGCCGTGGAGCGGCAGGTCCGTCTGCTGCTGGCTGCAGCGCCGCTGGCCACCAGCAGCGCCAAGGCGC TGGTGCGCTCGGTGCTGCCACCTGCCGACCGCGATGCCATCGATGCCGCCAATGCGGCGTTGATTGCCCGTCTGCGCGTG TCGCCCGAAGGCCAGGAAGGCCTGGGGGCGTTCCTCGACAAGCGCAGCGCCGCGTGGGTGCCGGAGAGCATGGCGTGA
Upstream 100 bases:
>100_bases TGTTAGGAATGGTTCTCAATTCTAGCATCGACGCACCGCGTCATGGCTCCGGCGACCCGGCCCGCTATCATGGTTCGCAT CCCATTCATGGACGTACGCA
Downstream 100 bases:
>100_bases TCGACCATATCGGCCTGGCCTGCAGCGATCTGCAAACCAGCACCGCGTTCTACCAGGCCGCGCTCGCGCCCCTGGGCATC GCGCTGCTGGTGGAACTGAC
Product: enoyl-CoA hydratase
Products: NA
Alternate protein names: 3-hydroxypropionyl-CoA dehydratase [H]
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MQDTGLIVEDHGAVRTLRLHRPAVHNAFDATLIAALTDALREAGRASQIRIVVLTGDGAAFSAGADLNWMRGMASANEAE NAADALALAQLMRTLDELPKPTIARVNGAAFGGGVGLVACCDIAIGCTEARFGLTESKLGLLPAVISPYVVAAIGARQAR RWFATAEIFDAGTAQLLGLLHQLVAADQLDIAVERQVRLLLAAAPLATSSAKALVRSVLPPADRDAIDAANAALIARLRV SPEGQEGLGAFLDKRSAAWVPESMA
Sequences:
>Translated_265_residues MQDTGLIVEDHGAVRTLRLHRPAVHNAFDATLIAALTDALREAGRASQIRIVVLTGDGAAFSAGADLNWMRGMASANEAE NAADALALAQLMRTLDELPKPTIARVNGAAFGGGVGLVACCDIAIGCTEARFGLTESKLGLLPAVISPYVVAAIGARQAR RWFATAEIFDAGTAQLLGLLHQLVAADQLDIAVERQVRLLLAAAPLATSSAKALVRSVLPPADRDAIDAANAALIARLRV SPEGQEGLGAFLDKRSAAWVPESMA >Mature_265_residues MQDTGLIVEDHGAVRTLRLHRPAVHNAFDATLIAALTDALREAGRASQIRIVVLTGDGAAFSAGADLNWMRGMASANEAE NAADALALAQLMRTLDELPKPTIARVNGAAFGGGVGLVACCDIAIGCTEARFGLTESKLGLLPAVISPYVVAAIGARQAR RWFATAEIFDAGTAQLLGLLHQLVAADQLDIAVERQVRLLLAAAPLATSSAKALVRSVLPPADRDAIDAANAALIARLRV SPEGQEGLGAFLDKRSAAWVPESMA
Specific function: Plays a role in autotrophic carbon fixation via the 3- hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl- CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crot
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI31542718, Length=249, Percent_Identity=26.1044176706827, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI194097323, Length=269, Percent_Identity=26.7657992565056, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI45643119, Length=256, Percent_Identity=26.171875, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI260275230, Length=256, Percent_Identity=26.171875, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI260274832, Length=256, Percent_Identity=26.171875, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI68989263, Length=184, Percent_Identity=30.9782608695652, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI157694516, Length=192, Percent_Identity=23.9583333333333, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI213417737, Length=192, Percent_Identity=23.9583333333333, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1787659, Length=253, Percent_Identity=33.201581027668, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1788597, Length=252, Percent_Identity=30.1587301587302, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI221142681, Length=269, Percent_Identity=27.1375464684015, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI87082183, Length=252, Percent_Identity=25.3968253968254, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787660, Length=254, Percent_Identity=31.1023622047244, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790281, Length=170, Percent_Identity=31.7647058823529, Blast_Score=68, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17540714, Length=206, Percent_Identity=29.6116504854369, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17554946, Length=258, Percent_Identity=29.4573643410853, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI25145438, Length=260, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17540306, Length=237, Percent_Identity=25.7383966244726, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17535521, Length=256, Percent_Identity=25.78125, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653139, Length=268, Percent_Identity=27.9850746268657, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI19922422, Length=256, Percent_Identity=25.390625, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI20129971, Length=253, Percent_Identity=28.8537549407115, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24653477, Length=253, Percent_Identity=28.8537549407115, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI19920382, Length=227, Percent_Identity=25.5506607929515, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.116 [H]
Molecular weight: Translated: 27573; Mature: 27573
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDTGLIVEDHGAVRTLRLHRPAVHNAFDATLIAALTDALREAGRASQIRIVVLTGDGAA CCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCE FSAGADLNWMRGMASANEAENAADALALAQLMRTLDELPKPTIARVNGAAFGGGVGLVAC EECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHCCCCCCCCCHHHHHH CDIAIGCTEARFGLTESKLGLLPAVISPYVVAAIGARQARRWFATAEIFDAGTAQLLGLL HHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH HQLVAADQLDIAVERQVRLLLAAAPLATSSAKALVRSVLPPADRDAIDAANAALIARLRV HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHEEEEEC SPEGQEGLGAFLDKRSAAWVPESMA CCCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MQDTGLIVEDHGAVRTLRLHRPAVHNAFDATLIAALTDALREAGRASQIRIVVLTGDGAA CCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCE FSAGADLNWMRGMASANEAENAADALALAQLMRTLDELPKPTIARVNGAAFGGGVGLVAC EECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHCCCCCCCCCHHHHHH CDIAIGCTEARFGLTESKLGLLPAVISPYVVAAIGARQARRWFATAEIFDAGTAQLLGLL HHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH HQLVAADQLDIAVERQVRLLLAAAPLATSSAKALVRSVLPPADRDAIDAANAALIARLRV HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHEEEEEC SPEGQEGLGAFLDKRSAAWVPESMA CCCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA