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The map label for this gene is ygaD [H]

Identifier: 21242486

GI number: 21242486

Start: 1996379

End: 1996879

Strand: Direct

Name: ygaD [H]

Synonym: XAC1737

Alternate gene names: 21242486

Gene position: 1996379-1996879 (Clockwise)

Preceding gene: 21242485

Following gene: 21242487

Centisome position: 38.57

GC content: 65.87

Gene sequence:

>501_bases
GTGCCCATGTCTTTTTCCGCCGATTCCGAACTGCAGCAGCTGGCCGAAGCCCTCGGGCAGCAATTGCTTGCCGCGCGCGA
GCGCCTGGTCACTGCCGAGAGTTGCACCGGAGGCTGGATCGCCAAGGCAGTGACCGATGTCGCCGGCTCCTCGCATTGGT
TCGATTGCGGGATGGCCGCCTACAGCTATGAGGCCAAGCAGGCGCTGCTCGGCGTCCGCCCACAGACCCTGGAAGTGCAT
GGGGCGGTCAGTCGCGAAACGGTGATCGAGATGGTCTCTGGGGCCCTGGTGAATTCCGGCGCAAGCATCGCAGTGGCGGT
GACCGGCATTGCCGGGCCCGGCGGCGGCAGTGAGGACAAGCCGGTCGGCACGGTCTGGATCGGCTGGAAACGTCGCGGTG
GTTACGCCACGGCGCAACTGTTCCAGTTCAATGGCGACCGCGATGCGGTGCGTCGTCAGACCGTCGCTGCAGCACTGCGC
GGATTGAGCGCGCTGCTTTAG

Upstream 100 bases:

>100_bases
CGCCACTGAACCTTGGCCGCCTGGCGCCCAGGCGGAATCGGCGCCAGCGGCAGACAGGCGCGACGAATTGGGCTAAAACG
TCCGCTGCCCCCTCCTTGCC

Downstream 100 bases:

>100_bases
CACTCGTTGGGTCCACTGGATGGGGTTCGGTAGCAGATCCGCAACGCCCTATTGTCAACGCAATCTCGCCCAGCATGGAA
ACCCAAACGCTGTAGTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPMSFSADSELQQLAEALGQQLLAARERLVTAESCTGGWIAKAVTDVAGSSHWFDCGMAAYSYEAKQALLGVRPQTLEVH
GAVSRETVIEMVSGALVNSGASIAVAVTGIAGPGGGSEDKPVGTVWIGWKRRGGYATAQLFQFNGDRDAVRRQTVAAALR
GLSALL

Sequences:

>Translated_166_residues
MPMSFSADSELQQLAEALGQQLLAARERLVTAESCTGGWIAKAVTDVAGSSHWFDCGMAAYSYEAKQALLGVRPQTLEVH
GAVSRETVIEMVSGALVNSGASIAVAVTGIAGPGGGSEDKPVGTVWIGWKRRGGYATAQLFQFNGDRDAVRRQTVAAALR
GLSALL
>Mature_165_residues
PMSFSADSELQQLAEALGQQLLAARERLVTAESCTGGWIAKAVTDVAGSSHWFDCGMAAYSYEAKQALLGVRPQTLEVHG
AVSRETVIEMVSGALVNSGASIAVAVTGIAGPGGGSEDKPVGTVWIGWKRRGGYATAQLFQFNGDRDAVRRQTVAAALRG
LSALL

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=155, Percent_Identity=55.4838709677419, Blast_Score=164, Evalue=2e-42,
Organism=Escherichia coli, GI1787818, Length=140, Percent_Identity=38.5714285714286, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17325; Mature: 17194

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMSFSADSELQQLAEALGQQLLAARERLVTAESCTGGWIAKAVTDVAGSSHWFDCGMAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHCCHHH
YSYEAKQALLGVRPQTLEVHGAVSRETVIEMVSGALVNSGASIAVAVTGIAGPGGGSEDK
HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC
PVGTVWIGWKRRGGYATAQLFQFNGDRDAVRRQTVAAALRGLSALL
CEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PMSFSADSELQQLAEALGQQLLAARERLVTAESCTGGWIAKAVTDVAGSSHWFDCGMAA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHCCHHH
YSYEAKQALLGVRPQTLEVHGAVSRETVIEMVSGALVNSGASIAVAVTGIAGPGGGSEDK
HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC
PVGTVWIGWKRRGGYATAQLFQFNGDRDAVRRQTVAAALRGLSALL
CEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]