| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is gcd [H]
Identifier: 21242383
GI number: 21242383
Start: 1882248
End: 1884242
Strand: Direct
Name: gcd [H]
Synonym: XAC1633
Alternate gene names: 21242383
Gene position: 1882248-1884242 (Clockwise)
Preceding gene: 21242382
Following gene: 21242389
Centisome position: 36.37
GC content: 65.71
Gene sequence:
>1995_bases GTGCTCGGGGGCCTGGTCACCCGCGACACATCCGCCCCGGTTGCGGCGTCTGGCGCGCAGCCGGCGAATGCACCTGCCGA CGGCGATTGGGCCGCGTACGGACGCAGCCAGGCCGGCCAACGCTATTCGCCGCTGCAGCAGATCAATCGCGACAATGTGA CGCAGCTGCAGCAAGCCTGGCTTTTCCACACCGGCGATTTGCCGAACAAGCGCTGGGGTGCGGAAACCACGCCGCTGAAG GTGGGCGACAGCCTGTATCTGTGCACTGCGCGCAACCAGGTGATAGCGCTGGATGCCGCCAGCGGCAAGCAGCGCTGGCG CTACGATCCCAAGGTCAAGGACGAGGCGATCCCGTACACGGCGGCATGCCGTGGCGTCTCGTATTACGAAGTACCGGCGG CTGCCGACGTTGCGGATGCTGGAGCAACGACAGCGCTATGCCGCACGCGCGTGATCGAAGGCACGCTCGACGGGCGCTTG ATTGCGCTGGACGCACGCAGCGGCACGCCGTGCCCGGATTTCGGCAGCAACGGTCAGGTGGATATCACCGTCGGTATGGG CGAGACGCCGCCTGGCTATGTGTCGATCAATTCGCCGCCGGCCATCGTGCGCGGCGTGGTGGTCACCGGGCATCAGGTGC TCGACGGGCAGAAGCGTTACGAGCCCTCCGGTGTGATCGAAGGTTTCGATGCGGTGACCGGCAAGTTGCGCTGGGCCTGG GACATGACGCATCCGGAATGGAACGGCGCACCGCCGCCGGGCCAGAGCTGGACGCGCGGCACGCCCAATATGTGGACCAC CGCCGCAGCCGATGAGCAGTTGGGCTACGTGTATCTGCCGATGGGCAATTCCACCGCCGATTACTGGAGCAGCTCGCGCA CGCCGCAGGAGAACCGTTATGCGACCTCGCTGGTGGCGCTGGATGTCACCACCGGCAAGCCGGTGTGGAATTTCCAGACC ACGCACATCGATGCCTGGGATTACGACCTGGGCTCGCAGCCGAGCCTGATCGACTTCCCCAAGGACGGCGTCAACGTGCC GGCGGTGCTGTTGCCGAGCAAGCAGGGCGAGCTGTACGTGCTAGATCGGCGTACCGGCAAGCCGCTGGTGGGCGTGGAAG AGCGTACGGTGCCAGGCGGTGGCGTGGAGCCTCAGATGCGTGCCAAGACGCAGCCGTTCTCGCTGTATCACACGCTGCGC AAGCCGGACCTGAGCGAGCGCGACATGTGGGGCATGACTCCGATCGACCAGCTGGTTTGCCGGATCCAGTTTCGCAAGGC CAGTTACAAGGGCATTTACACGCCGCCGGGAGCGGACCGGCATTCGATCGAGTACCCCGGTTACAACGGCGGTTCGGATT GGGGCAGCGTGGCGGTGGATCCGCACCGCGGTGTGATCGTGGCCAACTACAACGACATGCCCAACTACAACCTGCTGGTG CCGCGCGCCAAGGCCGACAAGCTGGGCTGGGCACCGCGCGATGAAGTGCGTGGCGATGCCGGCGGCGCGGAAGGCGCAGG CGACCCGCAGACCGGCACGCCGTATGCAGTCAACGTCAATGCCGGCTGGCGTCTGCCGTTCACCAAGTTGCTGTGCAAGG AACCGCCGTACGGCGGCATCCGCGCCATCGATCTGGCCAGTGGCAAGACCCTGTGGGACCGCCCCTTCGGCAGTGCGCGT GGCAATGGCCCGTTCGGCATCCGTTCCGGCCTCCCGATCGAAATCGGTACACCGAACAATGGTGGCGCGGTGGTGACGGC AAGCGGTTTGATCTTCATTGCCGCCGCCACCGACGACCTGATCCGCGCGATCGATCTGGCCACCGGCAAGGAGCTGTGGC ATGCCAAGTTGCCGGCCGGCGGCCAGGCCAACCCGATGGTGTACGAATACGGTGGCCGCGAGTATCTGGTCATCATGGCC GGCGGGCACCACTTCATGGAGACACCGGCAGGCGATGCGGTGATCGCCTACGCGTTACCGCTTAAAGCGCAGTGA
Upstream 100 bases:
>100_bases CTGGCCGGTGCGCTGGCGGTGGTATTTGTGGTGGCGTTCGCATTGGCGTTCATGCCGCATGGCGTGACTGAAGCCGATCG CGCTGGCGCATGCGGCAGGC
Downstream 100 bases:
>100_bases TTTCGGAGACGAGCGAGATCGGCTGCTAAAGCGGCACGCAAACGCCTGCGTAGGCGCCATGCCACGTGGCCCGTGTCTGG AATCGGAGTGTGCCAATGCA
Product: glucose dehydrogenase
Products: NA
Alternate protein names: D-arabitol dehydrogenase large subunit; ARDH; D-sorbitol dehydrogenase subunit sldA; SLDH; Gluconate/polyol dehydrogenase large subunit [H]
Number of amino acids: Translated: 664; Mature: 664
Protein sequence:
>664_residues MLGGLVTRDTSAPVAASGAQPANAPADGDWAAYGRSQAGQRYSPLQQINRDNVTQLQQAWLFHTGDLPNKRWGAETTPLK VGDSLYLCTARNQVIALDAASGKQRWRYDPKVKDEAIPYTAACRGVSYYEVPAAADVADAGATTALCRTRVIEGTLDGRL IALDARSGTPCPDFGSNGQVDITVGMGETPPGYVSINSPPAIVRGVVVTGHQVLDGQKRYEPSGVIEGFDAVTGKLRWAW DMTHPEWNGAPPPGQSWTRGTPNMWTTAAADEQLGYVYLPMGNSTADYWSSSRTPQENRYATSLVALDVTTGKPVWNFQT THIDAWDYDLGSQPSLIDFPKDGVNVPAVLLPSKQGELYVLDRRTGKPLVGVEERTVPGGGVEPQMRAKTQPFSLYHTLR KPDLSERDMWGMTPIDQLVCRIQFRKASYKGIYTPPGADRHSIEYPGYNGGSDWGSVAVDPHRGVIVANYNDMPNYNLLV PRAKADKLGWAPRDEVRGDAGGAEGAGDPQTGTPYAVNVNAGWRLPFTKLLCKEPPYGGIRAIDLASGKTLWDRPFGSAR GNGPFGIRSGLPIEIGTPNNGGAVVTASGLIFIAAATDDLIRAIDLATGKELWHAKLPAGGQANPMVYEYGGREYLVIMA GGHHFMETPAGDAVIAYALPLKAQ
Sequences:
>Translated_664_residues MLGGLVTRDTSAPVAASGAQPANAPADGDWAAYGRSQAGQRYSPLQQINRDNVTQLQQAWLFHTGDLPNKRWGAETTPLK VGDSLYLCTARNQVIALDAASGKQRWRYDPKVKDEAIPYTAACRGVSYYEVPAAADVADAGATTALCRTRVIEGTLDGRL IALDARSGTPCPDFGSNGQVDITVGMGETPPGYVSINSPPAIVRGVVVTGHQVLDGQKRYEPSGVIEGFDAVTGKLRWAW DMTHPEWNGAPPPGQSWTRGTPNMWTTAAADEQLGYVYLPMGNSTADYWSSSRTPQENRYATSLVALDVTTGKPVWNFQT THIDAWDYDLGSQPSLIDFPKDGVNVPAVLLPSKQGELYVLDRRTGKPLVGVEERTVPGGGVEPQMRAKTQPFSLYHTLR KPDLSERDMWGMTPIDQLVCRIQFRKASYKGIYTPPGADRHSIEYPGYNGGSDWGSVAVDPHRGVIVANYNDMPNYNLLV PRAKADKLGWAPRDEVRGDAGGAEGAGDPQTGTPYAVNVNAGWRLPFTKLLCKEPPYGGIRAIDLASGKTLWDRPFGSAR GNGPFGIRSGLPIEIGTPNNGGAVVTASGLIFIAAATDDLIRAIDLATGKELWHAKLPAGGQANPMVYEYGGREYLVIMA GGHHFMETPAGDAVIAYALPLKAQ >Mature_664_residues MLGGLVTRDTSAPVAASGAQPANAPADGDWAAYGRSQAGQRYSPLQQINRDNVTQLQQAWLFHTGDLPNKRWGAETTPLK VGDSLYLCTARNQVIALDAASGKQRWRYDPKVKDEAIPYTAACRGVSYYEVPAAADVADAGATTALCRTRVIEGTLDGRL IALDARSGTPCPDFGSNGQVDITVGMGETPPGYVSINSPPAIVRGVVVTGHQVLDGQKRYEPSGVIEGFDAVTGKLRWAW DMTHPEWNGAPPPGQSWTRGTPNMWTTAAADEQLGYVYLPMGNSTADYWSSSRTPQENRYATSLVALDVTTGKPVWNFQT THIDAWDYDLGSQPSLIDFPKDGVNVPAVLLPSKQGELYVLDRRTGKPLVGVEERTVPGGGVEPQMRAKTQPFSLYHTLR KPDLSERDMWGMTPIDQLVCRIQFRKASYKGIYTPPGADRHSIEYPGYNGGSDWGSVAVDPHRGVIVANYNDMPNYNLLV PRAKADKLGWAPRDEVRGDAGGAEGAGDPQTGTPYAVNVNAGWRLPFTKLLCKEPPYGGIRAIDLASGKTLWDRPFGSAR GNGPFGIRSGLPIEIGTPNNGGAVVTASGLIFIAAATDDLIRAIDLATGKELWHAKLPAGGQANPMVYEYGGREYLVIMA GGHHFMETPAGDAVIAYALPLKAQ
Specific function: Catalyzes the oxidation of glycerol to glycerone. Also acts, more slowly, on a number of other polyols including D- sorbitol, D-arabinitol, D-mannitol, meso-erythritol, adonitol and propylene glycol [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Secreted (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=649, Percent_Identity=43.4514637904468, Blast_Score=512, Evalue=1e-146,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.99.22 [H]
Molecular weight: Translated: 71435; Mature: 71435
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGGLVTRDTSAPVAASGAQPANAPADGDWAAYGRSQAGQRYSPLQQINRDNVTQLQQAW CCCCEEECCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHH LFHTGDLPNKRWGAETTPLKVGDSLYLCTARNQVIALDAASGKQRWRYDPKVKDEAIPYT EEECCCCCCCCCCCCCCCEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCHH AACRGVSYYEVPAAADVADAGATTALCRTRVIEGTLDGRLIALDARSGTPCPDFGSNGQV HHHCCCEEEECCCCCCHHCCCCHHHHHHHHHEEECCCCEEEEEECCCCCCCCCCCCCCEE DITVGMGETPPGYVSINSPPAIVRGVVVTGHQVLDGQKRYEPSGVIEGFDAVTGKLRWAW EEEEECCCCCCCEEEECCCCHHEEEEEEECCHHHCCHHHCCCCCHHCCCHHHCCEEEEEE DMTHPEWNGAPPPGQSWTRGTPNMWTTAAADEQLGYVYLPMGNSTADYWSSSRTPQENRY ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCE ATSLVALDVTTGKPVWNFQTTHIDAWDYDLGSQPSLIDFPKDGVNVPAVLLPSKQGELYV EEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEE LDRRTGKPLVGVEERTVPGGGVEPQMRAKTQPFSLYHTLRKPDLSERDMWGMTPIDQLVC EECCCCCCEECCCCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHH RIQFRKASYKGIYTPPGADRHSIEYPGYNGGSDWGSVAVDPHRGVIVANYNDMPNYNLLV EEEEECCCCCEEECCCCCCCCEEECCCCCCCCCCCCEEECCCCCEEEECCCCCCCCEEEE PRAKADKLGWAPRDEVRGDAGGAEGAGDPQTGTPYAVNVNAGWRLPFTKLLCKEPPYGGI ECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCE RAIDLASGKTLWDRPFGSARGNGPFGIRSGLPIEIGTPNNGGAVVTASGLIFIAAATDDL EEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCEEEEEECCHHH IRAIDLATGKELWHAKLPAGGQANPMVYEYGGREYLVIMAGGHHFMETPAGDAVIAYALP HHHHHHHCCCHHEEEECCCCCCCCCEEEEECCCEEEEEEECCCEEECCCCCCEEEEEEEC LKAQ CCCC >Mature Secondary Structure MLGGLVTRDTSAPVAASGAQPANAPADGDWAAYGRSQAGQRYSPLQQINRDNVTQLQQAW CCCCEEECCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHH LFHTGDLPNKRWGAETTPLKVGDSLYLCTARNQVIALDAASGKQRWRYDPKVKDEAIPYT EEECCCCCCCCCCCCCCCEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCHH AACRGVSYYEVPAAADVADAGATTALCRTRVIEGTLDGRLIALDARSGTPCPDFGSNGQV HHHCCCEEEECCCCCCHHCCCCHHHHHHHHHEEECCCCEEEEEECCCCCCCCCCCCCCEE DITVGMGETPPGYVSINSPPAIVRGVVVTGHQVLDGQKRYEPSGVIEGFDAVTGKLRWAW EEEEECCCCCCCEEEECCCCHHEEEEEEECCHHHCCHHHCCCCCHHCCCHHHCCEEEEEE DMTHPEWNGAPPPGQSWTRGTPNMWTTAAADEQLGYVYLPMGNSTADYWSSSRTPQENRY ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCE ATSLVALDVTTGKPVWNFQTTHIDAWDYDLGSQPSLIDFPKDGVNVPAVLLPSKQGELYV EEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEE LDRRTGKPLVGVEERTVPGGGVEPQMRAKTQPFSLYHTLRKPDLSERDMWGMTPIDQLVC EECCCCCCEECCCCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHH RIQFRKASYKGIYTPPGADRHSIEYPGYNGGSDWGSVAVDPHRGVIVANYNDMPNYNLLV EEEEECCCCCEEECCCCCCCCEEECCCCCCCCCCCCEEECCCCCEEEECCCCCCCCEEEE PRAKADKLGWAPRDEVRGDAGGAEGAGDPQTGTPYAVNVNAGWRLPFTKLLCKEPPYGGI ECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCE RAIDLASGKTLWDRPFGSARGNGPFGIRSGLPIEIGTPNNGGAVVTASGLIFIAAATDDL EEEEECCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCEEEEEECCHHH IRAIDLATGKELWHAKLPAGGQANPMVYEYGGREYLVIMAGGHHFMETPAGDAVIAYALP HHHHHHHCCCHHEEEECCCCCCCCCEEEEECCCEEEEEEECCCEEECCCCCCEEEEEEEC LKAQ CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12686146 [H]