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The map label for this gene is sdeB [H]

Identifier: 21242389

GI number: 21242389

Start: 1891212

End: 1892567

Strand: Direct

Name: sdeB [H]

Synonym: XAC1639

Alternate gene names: 21242389

Gene position: 1891212-1892567 (Clockwise)

Preceding gene: 21242383

Following gene: 77748599

Centisome position: 36.54

GC content: 68.58

Gene sequence:

>1356_bases
ATGCAGGTGTTCTGGGCCGCCCGGGCATTGTTGCCCGACGGCTGGGCGAGCGGCGTGCGGATCGCACTAGCGCAGGGCCG
TATCGGCGCGGTGCAGGTCGATGCGCCTGCTGCCCCCACCGACACGCGTTGCGAGGTATTGCTGCCAGGCCTGGGCAACC
TGCATAGCCATGCCTTTCAGCGCGGCATGGCGGGGTTGACCGAAGTGAGTGGGCGCAGCGGCGACAGCTTCTGGAGCTGG
CGCGAGCTGATGTACCGCTTCGTCGACCGGCTCGACCCGGACAGCCTGCAGGCGATCGCCGAGCAGGCCTATGTGGAAAT
GCTCGAAAGCGGCTTCACCCGGGTCGGCGAATTCCATTACCTGCACCACGCGGCGAGCGGTGCGCGGTATGCGCAGGCCG
GCGAAATGTCCGAGCGCATTGCCGCCGCTGCCGCCAACACCGGTATCGGGCTCAGCTTGTTGCCGGTGTTCTATGCGCAC
TCGGATTTCGGTGGTGCCGCCCCCAGCCCGGCGCAACGCCGTCTGATCCACGACATCGACGGCTTCGCGCGCTTGCTGGA
CGACTGCAGACACAGCCTGAAAGCGCTGCCGGACGCGGTGCTCGGGCTGGCGCCGCACAGCCTGCGCGCGGTCACTCCGC
AGCAACTGGCAGCGCTGGTGCCGCTTACCGATGGCCCCATTCATCTGCATATCGCCGAGCAACAGCGTGAAGTGGACGCC
TGCCTGGCCTGGTCCAAGCAGCGCCCGGTGCAGTGGCTGCTGGCCAACGCGCCGGTGGATGCGCGCTGGTGCCTGGTGCA
CGCCACGCATGTGGATGCACGCGAACTGCAGGCGATTGTCACCAGCGGCGCGGTGGTCGGGCTGTGCCCGATCACCGAAG
CGAACCTGGGCGATGGCGTGTTCCCGATGCAGGCCTTTGCTGCTGCGGGCGGGCGTTTTGGAGTGGGTTCGGATTCGAAT
GTGCTGATCGATGCAGCCGAAGAACTGCGCCTGCTCGAGTACGGCCAGCGCCTGACGCTGCAGGCGCGCAATGTCCTGGC
GCAGGGGCCTGTCTCGAGCGGGCGCTGGCTCTACGATCAGGCTGGCATGGGTGCCGCGCAGGCGCTGGGCCTCGCGCAGA
CCGGCATCCGTGCCGGCGCAGCGGCCGATCTGATCGAACTGGACGCCGCGCATCCGGCCCTGCTGGCGCGCAGCGACGAC
GCCTTGCTGGACAGCTGGCTGTTTGCCGCGCGTGGCACCGCGGTGCGCAACGTCTGGCGTGGCGGGCGCTGGGTGGTGCG
CAACGGGCAGCATGTCGACCGCGCCCGTATCGCCATACGGTTTGCCGCGGTGTTGCGCAGCCTGCTGGGCCAGTGA

Upstream 100 bases:

>100_bases
TGTGCCACAGAACGTCGCAATGCATGGCGCAGGCTCGTGGTGTCTGATATGTATATACAATAGATTCGGCGATCGAGGGT
GTCCAGTGGCAGACCAACAG

Downstream 100 bases:

>100_bases
CATTGGCCATCGCACGATGCAAGAGTGGTCAGGTGGATGCCCAACGGCGCGCAGAAGTCGTGGTGTACGCTTTACACCTG
CCGATGACGGGCCCCGGCCG

Product: N-formimino-L-glutamate deiminase

Products: NA

Alternate protein names: MTA/SAH deaminase [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MQVFWAARALLPDGWASGVRIALAQGRIGAVQVDAPAAPTDTRCEVLLPGLGNLHSHAFQRGMAGLTEVSGRSGDSFWSW
RELMYRFVDRLDPDSLQAIAEQAYVEMLESGFTRVGEFHYLHHAASGARYAQAGEMSERIAAAAANTGIGLSLLPVFYAH
SDFGGAAPSPAQRRLIHDIDGFARLLDDCRHSLKALPDAVLGLAPHSLRAVTPQQLAALVPLTDGPIHLHIAEQQREVDA
CLAWSKQRPVQWLLANAPVDARWCLVHATHVDARELQAIVTSGAVVGLCPITEANLGDGVFPMQAFAAAGGRFGVGSDSN
VLIDAAEELRLLEYGQRLTLQARNVLAQGPVSSGRWLYDQAGMGAAQALGLAQTGIRAGAAADLIELDAAHPALLARSDD
ALLDSWLFAARGTAVRNVWRGGRWVVRNGQHVDRARIAIRFAAVLRSLLGQ

Sequences:

>Translated_451_residues
MQVFWAARALLPDGWASGVRIALAQGRIGAVQVDAPAAPTDTRCEVLLPGLGNLHSHAFQRGMAGLTEVSGRSGDSFWSW
RELMYRFVDRLDPDSLQAIAEQAYVEMLESGFTRVGEFHYLHHAASGARYAQAGEMSERIAAAAANTGIGLSLLPVFYAH
SDFGGAAPSPAQRRLIHDIDGFARLLDDCRHSLKALPDAVLGLAPHSLRAVTPQQLAALVPLTDGPIHLHIAEQQREVDA
CLAWSKQRPVQWLLANAPVDARWCLVHATHVDARELQAIVTSGAVVGLCPITEANLGDGVFPMQAFAAAGGRFGVGSDSN
VLIDAAEELRLLEYGQRLTLQARNVLAQGPVSSGRWLYDQAGMGAAQALGLAQTGIRAGAAADLIELDAAHPALLARSDD
ALLDSWLFAARGTAVRNVWRGGRWVVRNGQHVDRARIAIRFAAVLRSLLGQ
>Mature_451_residues
MQVFWAARALLPDGWASGVRIALAQGRIGAVQVDAPAAPTDTRCEVLLPGLGNLHSHAFQRGMAGLTEVSGRSGDSFWSW
RELMYRFVDRLDPDSLQAIAEQAYVEMLESGFTRVGEFHYLHHAASGARYAQAGEMSERIAAAAANTGIGLSLLPVFYAH
SDFGGAAPSPAQRRLIHDIDGFARLLDDCRHSLKALPDAVLGLAPHSLRAVTPQQLAALVPLTDGPIHLHIAEQQREVDA
CLAWSKQRPVQWLLANAPVDARWCLVHATHVDARELQAIVTSGAVVGLCPITEANLGDGVFPMQAFAAAGGRFGVGSDSN
VLIDAAEELRLLEYGQRLTLQARNVLAQGPVSSGRWLYDQAGMGAAQALGLAQTGIRAGAAADLIELDAAHPALLARSDD
ALLDSWLFAARGTAVRNVWRGGRWVVRNGQHVDRARIAIRFAAVLRSLLGQ

Specific function: Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine [H]

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MTA/SAH deaminase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17540282, Length=384, Percent_Identity=30.7291666666667, Blast_Score=179, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006680
- InterPro:   IPR011059 [H]

Pfam domain/function: PF01979 Amidohydro_1 [H]

EC number: =3.5.4.28 [H]

Molecular weight: Translated: 48341; Mature: 48341

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVFWAARALLPDGWASGVRIALAQGRIGAVQVDAPAAPTDTRCEVLLPGLGNLHSHAFQ
CCHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHH
RGMAGLTEVSGRSGDSFWSWRELMYRFVDRLDPDSLQAIAEQAYVEMLESGFTRVGEFHY
HHHCCHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHHAASGARYAQAGEMSERIAAAAANTGIGLSLLPVFYAHSDFGGAAPSPAQRRLIHDID
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
GFARLLDDCRHSLKALPDAVLGLAPHSLRAVTPQQLAALVPLTDGPIHLHIAEQQREVDA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHEEEECCCCCEEEEECHHHHHHHH
CLAWSKQRPVQWLLANAPVDARWCLVHATHVDARELQAIVTSGAVVGLCPITEANLGDGV
HHHCCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCC
FPMQAFAAAGGRFGVGSDSNVLIDAAEELRLLEYGQRLTLQARNVLAQGPVSSGRWLYDQ
CHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEHH
AGMGAAQALGLAQTGIRAGAAADLIELDAAHPALLARSDDALLDSWLFAARGTAVRNVWR
CCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHC
GGRWVVRNGQHVDRARIAIRFAAVLRSLLGQ
CCEEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQVFWAARALLPDGWASGVRIALAQGRIGAVQVDAPAAPTDTRCEVLLPGLGNLHSHAFQ
CCHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHH
RGMAGLTEVSGRSGDSFWSWRELMYRFVDRLDPDSLQAIAEQAYVEMLESGFTRVGEFHY
HHHCCHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHHAASGARYAQAGEMSERIAAAAANTGIGLSLLPVFYAHSDFGGAAPSPAQRRLIHDID
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
GFARLLDDCRHSLKALPDAVLGLAPHSLRAVTPQQLAALVPLTDGPIHLHIAEQQREVDA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHEEEECCCCCEEEEECHHHHHHHH
CLAWSKQRPVQWLLANAPVDARWCLVHATHVDARELQAIVTSGAVVGLCPITEANLGDGV
HHHCCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCC
FPMQAFAAAGGRFGVGSDSNVLIDAAEELRLLEYGQRLTLQARNVLAQGPVSSGRWLYDQ
CHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEHH
AGMGAAQALGLAQTGIRAGAAADLIELDAAHPALLARSDDALLDSWLFAARGTAVRNVWR
CCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHC
GGRWVVRNGQHVDRARIAIRFAAVLRSLLGQ
CCEEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA