| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21242315
Identifier: 21242315
GI number: 21242315
Start: 1807388
End: 1808818
Strand: Direct
Name: 21242315
Synonym: XAC1564
Alternate gene names: NA
Gene position: 1807388-1808818 (Clockwise)
Preceding gene: 21242313
Following gene: 77748594
Centisome position: 34.92
GC content: 66.18
Gene sequence:
>1431_bases ATGGCAAGCGCGCAAACGCCGCCACCGTCGATCGTGCCGACCGATCGTCTGCAGGAGTCCTGGTGGGCGCAGCGGCATGC CCAGGTGCTGGAACAGGTCAAGCAGCACCCGGATGCCAAGTTGCTGCTGATCGGCGATTCGATCACCCAAAACTACGAAA AAGCCAAGGCGCCGGACGAAGACTTCCAGCCGACCTGGCAAACCTTCTACGGTAGCCGCGGCGCACTCAACCTGGGTTTC AGTGGCGACGGCACCGAAAACGTGTTGTGGCGGCTGGCCAATGGCGAAGTCGACGGGCTGCAGCCGAAGGTCGCGCTGGT GCTGATCGGCACCAATAACACCGGCCATCTCGGTCAAACCGCCGAGCAGACCCAACTCGGTATCGATGCGGTGGTCGCAG CGATCGAGCAAAAGCTGCCGCGCACGCACATCCTGCTGCTGAGTGTGTTGCCCAGCGATCTCTCCAGCGAAAAATCGCGG CGCGATGCGCAGATCAATCAGGGCCTGGCCGTGCGTTACGGCGACAACCCACGCGTGACCTATCTGGATGTGAGCTCGGT CTTCCAGCGCGACGGCAAGCTGCGCACCGAGCTGTTTTACGACACCCGGTTCCGTCCGGCGGCCGGTGCCTTGCATCCGG ACACGCGGGGGCAGCGCATGCTGGCCGAAGCGATCGAGCCCACGCTCGCGCGGCTGCTGGGCGAGCCGCCGGTCAAGCCG GTGGCCGAACTCGGCCGTGACGCGGCGACCTCGCTGATGCCGGTCGACTGGCTGGAGCAGGATTCCTACGACTGGTACGC ACGCCACCACGCAGCGCTGGCCATCGCGCGCAGCCTGAAGCCGGAGGTAGTGATGATCGGCGACTCGATCACCCATTTCT GGTCTGGGCCGCCGCAGGCCACGCGCGTCAGTGGCCCCGAATCGTGGCAATGGTTGTATGGCATGCGGCCGGTACTGAAT CTGGGCTTCGGCTGGGACCGCACGCAAAATGTGCTGTGGCGCATCCGCCAGGGCGAACTCGATGGTCTGGACCCGCGCTG GGTGGTGCTGCATCTCGGCACCAACAATCTCAGCGGCACGGCGCAATCGCGCGCCAGTACCCCGGCTGAAGCGGCGTTGG GTGTGCAGGCGGTGGTGAGTGAGGTGCGCCGCCGCCTGCCCAACAGCAAGCTGATCCTGATGGCGATCATGCCGCGTGGC CGCAACCCCGACGATGCGCGGCGCGCGCCGATCGCCGAGACAAACCGGCTGCTGGTCGCGCGCTATGCCAAGGATCCGGC GGTGCAGTTGGTCGATATCGGCCCCAGGCTGCTGCAGCCCGACGGCACGCTGCCCGAAGCGCTGATGCCCGATGGCACCC ATCCCAGCGAATCCGGCTACCGCATCTGGGCACGGGCGCTGCGCGAGGCAGGAATTACCGCTGCGCCGTGA
Upstream 100 bases:
>100_bases TGCGCGCATGTCCCGGTCTTCGCACGCTGCTTCGTCCCGTGTTTCACGCTCCGGCTTTGCATATACGCTTTGGTGCTGGG GGCTGCTGCTGTTCTGCACG
Downstream 100 bases:
>100_bases CGGGGGCGGCGCGCGCGCGTTCGTCGAAAGGCGAGCGCGGCTGGTGAGTGTGGCACTGCGGCCGCCCGCGCGCTGCTGCG TTGTGCGTGCCGACAGTCGC
Product: acetylhydrolase
Products: NA
Alternate protein names: GDSL Family Lipase; Acetylhydrolase; Mucin-Desulfating Sulfatase; 1-Alkyl-2-Acetylglycerophosphocholine Esterase; Exo-1 4-Beta-Glucosidase; Sialate O-Acetylesterase; Acetylhydrolase Lipase_gdsl Protein; GDSL-Like Lipase/Acylhydrolase Domain-Containing Protein; 1 4-Beta-D-Glucan Glucohydrolase Cel3D; Glycoside Hydrolase Family 3 Domain Protein; Lipolytic G-D-S-L; GDSL-Like Lipase/Acylhydrolase; Lipolytic GDSL Family; Lipase/Acylhydrolase Family Protein; Platelet-Activating Factor Acetylhydrolase IB Gamma Subunit
Number of amino acids: Translated: 476; Mature: 475
Protein sequence:
>476_residues MASAQTPPPSIVPTDRLQESWWAQRHAQVLEQVKQHPDAKLLLIGDSITQNYEKAKAPDEDFQPTWQTFYGSRGALNLGF SGDGTENVLWRLANGEVDGLQPKVALVLIGTNNTGHLGQTAEQTQLGIDAVVAAIEQKLPRTHILLLSVLPSDLSSEKSR RDAQINQGLAVRYGDNPRVTYLDVSSVFQRDGKLRTELFYDTRFRPAAGALHPDTRGQRMLAEAIEPTLARLLGEPPVKP VAELGRDAATSLMPVDWLEQDSYDWYARHHAALAIARSLKPEVVMIGDSITHFWSGPPQATRVSGPESWQWLYGMRPVLN LGFGWDRTQNVLWRIRQGELDGLDPRWVVLHLGTNNLSGTAQSRASTPAEAALGVQAVVSEVRRRLPNSKLILMAIMPRG RNPDDARRAPIAETNRLLVARYAKDPAVQLVDIGPRLLQPDGTLPEALMPDGTHPSESGYRIWARALREAGITAAP
Sequences:
>Translated_476_residues MASAQTPPPSIVPTDRLQESWWAQRHAQVLEQVKQHPDAKLLLIGDSITQNYEKAKAPDEDFQPTWQTFYGSRGALNLGF SGDGTENVLWRLANGEVDGLQPKVALVLIGTNNTGHLGQTAEQTQLGIDAVVAAIEQKLPRTHILLLSVLPSDLSSEKSR RDAQINQGLAVRYGDNPRVTYLDVSSVFQRDGKLRTELFYDTRFRPAAGALHPDTRGQRMLAEAIEPTLARLLGEPPVKP VAELGRDAATSLMPVDWLEQDSYDWYARHHAALAIARSLKPEVVMIGDSITHFWSGPPQATRVSGPESWQWLYGMRPVLN LGFGWDRTQNVLWRIRQGELDGLDPRWVVLHLGTNNLSGTAQSRASTPAEAALGVQAVVSEVRRRLPNSKLILMAIMPRG RNPDDARRAPIAETNRLLVARYAKDPAVQLVDIGPRLLQPDGTLPEALMPDGTHPSESGYRIWARALREAGITAAP >Mature_475_residues ASAQTPPPSIVPTDRLQESWWAQRHAQVLEQVKQHPDAKLLLIGDSITQNYEKAKAPDEDFQPTWQTFYGSRGALNLGFS GDGTENVLWRLANGEVDGLQPKVALVLIGTNNTGHLGQTAEQTQLGIDAVVAAIEQKLPRTHILLLSVLPSDLSSEKSRR DAQINQGLAVRYGDNPRVTYLDVSSVFQRDGKLRTELFYDTRFRPAAGALHPDTRGQRMLAEAIEPTLARLLGEPPVKPV AELGRDAATSLMPVDWLEQDSYDWYARHHAALAIARSLKPEVVMIGDSITHFWSGPPQATRVSGPESWQWLYGMRPVLNL GFGWDRTQNVLWRIRQGELDGLDPRWVVLHLGTNNLSGTAQSRASTPAEAALGVQAVVSEVRRRLPNSKLILMAIMPRGR NPDDARRAPIAETNRLLVARYAKDPAVQLVDIGPRLLQPDGTLPEALMPDGTHPSESGYRIWARALREAGITAAP
Specific function: Unknown
COG id: COG2755
COG function: function code E; Lysophospholipase L1 and related esterases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI225543099, Length=214, Percent_Identity=32.2429906542056, Blast_Score=112, Evalue=9e-25, Organism=Homo sapiens, GI225543097, Length=214, Percent_Identity=32.2429906542056, Blast_Score=112, Evalue=9e-25, Organism=Homo sapiens, GI4505587, Length=214, Percent_Identity=32.2429906542056, Blast_Score=112, Evalue=9e-25, Organism=Homo sapiens, GI4505585, Length=205, Percent_Identity=30.7317073170732, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI296080768, Length=143, Percent_Identity=33.5664335664336, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI296080766, Length=127, Percent_Identity=36.2204724409449, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI296080770, Length=123, Percent_Identity=35.7723577235772, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24642291, Length=197, Percent_Identity=31.4720812182741, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI24642289, Length=197, Percent_Identity=31.4720812182741, Blast_Score=104, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52538; Mature: 52407
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASAQTPPPSIVPTDRLQESWWAQRHAQVLEQVKQHPDAKLLLIGDSITQNYEKAKAPDE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCC DFQPTWQTFYGSRGALNLGFSGDGTENVLWRLANGEVDGLQPKVALVLIGTNNTGHLGQT CCCCHHHHHCCCCCCEEECCCCCCCHHHEEEECCCCCCCCCCEEEEEEEECCCCCCCCCC AEQTQLGIDAVVAAIEQKLPRTHILLLSVLPSDLSSEKSRRDAQINQGLAVRYGDNPRVT HHHHHHHHHHHHHHHHHHCCHHEEEEEHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCEE YLDVSSVFQRDGKLRTELFYDTRFRPAAGALHPDTRGQRMLAEAIEPTLARLLGEPPVKP EEEHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH VAELGRDAATSLMPVDWLEQDSYDWYARHHAALAIARSLKPEVVMIGDSITHFWSGPPQA HHHCCCHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCC TRVSGPESWQWLYGMRPVLNLGFGWDRTQNVLWRIRQGELDGLDPRWVVLHLGTNNLSGT CCCCCCCCCHHHHCCCHHHHCCCCCCHHHHHHHEECCCCCCCCCCCEEEEEECCCCCCCC AQSRASTPAEAALGVQAVVSEVRRRLPNSKLILMAIMPRGRNPDDARRAPIAETNRLLVA CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCEEEE RYAKDPAVQLVDIGPRLLQPDGTLPEALMPDGTHPSESGYRIWARALREAGITAAP EECCCCCEEEEECCCEEECCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure ASAQTPPPSIVPTDRLQESWWAQRHAQVLEQVKQHPDAKLLLIGDSITQNYEKAKAPDE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCC DFQPTWQTFYGSRGALNLGFSGDGTENVLWRLANGEVDGLQPKVALVLIGTNNTGHLGQT CCCCHHHHHCCCCCCEEECCCCCCCHHHEEEECCCCCCCCCCEEEEEEEECCCCCCCCCC AEQTQLGIDAVVAAIEQKLPRTHILLLSVLPSDLSSEKSRRDAQINQGLAVRYGDNPRVT HHHHHHHHHHHHHHHHHHCCHHEEEEEHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCEE YLDVSSVFQRDGKLRTELFYDTRFRPAAGALHPDTRGQRMLAEAIEPTLARLLGEPPVKP EEEHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH VAELGRDAATSLMPVDWLEQDSYDWYARHHAALAIARSLKPEVVMIGDSITHFWSGPPQA HHHCCCHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCC TRVSGPESWQWLYGMRPVLNLGFGWDRTQNVLWRIRQGELDGLDPRWVVLHLGTNNLSGT CCCCCCCCCHHHHCCCHHHHCCCCCCHHHHHHHEECCCCCCCCCCCEEEEEECCCCCCCC AQSRASTPAEAALGVQAVVSEVRRRLPNSKLILMAIMPRGRNPDDARRAPIAETNRLLVA CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCEEEE RYAKDPAVQLVDIGPRLLQPDGTLPEALMPDGTHPSESGYRIWARALREAGITAAP EECCCCCEEEEECCCEEECCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA