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The map label for this gene is rimM [H]

Identifier: 21242046

GI number: 21242046

Start: 1482120

End: 1482632

Strand: Direct

Name: rimM [H]

Synonym: XAC1293

Alternate gene names: 21242046

Gene position: 1482120-1482632 (Clockwise)

Preceding gene: 21242045

Following gene: 21242047

Centisome position: 28.64

GC content: 60.82

Gene sequence:

>513_bases
ATGAAGCAGAACGAGCGCCGCATCCTGTTAGGCAGGATTGTCGGCGCTTTTGGTGTCAAGGGTGAGCTGAAGCTCGAATC
CTGGACCGAGCCACGGACCGCCATCTTCCGCTATCAGCCGTGGATCGTGCGCTCGCCGTCCGGACAGGAATCGGTGGTCA
GCGGCGTGCGTGGGCGCGATCAGGGCAAGAATCTGATTGCGGTGTTCCCCGGCGTCACCGACCGCGACACGGTCGAAGCC
ATGCACGGGACTGAAATCTACGTCGCGCGCAGTGCGTTGCCGCCGCCCAAGCCCGACGAATATTACTGGGTGGATCTGGA
AGAATTGCAGGTGGAAACCGTCGAAGGCGTCAAGCTGGGCACGGTGTCGCACCTGTTCTCCACCGGCTCCAACGACGTGG
TGGTGGTGCGTGGCGATCGCGAACGGATGATTCCGTTTGTGTTCCCGGATTTCGTCAAGTCGGTCGACTTCGAAGCCAAC
CTGATCGTGGTGGACTGGGATCCGGATTTCTGA

Upstream 100 bases:

>100_bases
ACCGACAAGGTGCGTAACCTGTATCGCGAAGCCAAGTCTCAGGCCGCTGCGGCCTGATCTTGAGGGCCGGGTATCGCTAC
CTGGCCCAGAGTCGACGCAG

Downstream 100 bases:

>100_bases
TCAAAGCGGTGCCTCGGTGCTGCTCTTGCTCTCCCATTCCCTAACTCGACTCCCGATTCTCCAGTGCGCATCGACGTCAT
CAGCCTGTTCCCCGAGTTCA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKQNERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRSPSGQESVVSGVRGRDQGKNLIAVFPGVTDRDTVEA
MHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEAN
LIVVDWDPDF

Sequences:

>Translated_170_residues
MKQNERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRSPSGQESVVSGVRGRDQGKNLIAVFPGVTDRDTVEA
MHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEAN
LIVVDWDPDF
>Mature_170_residues
MKQNERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRSPSGQESVVSGVRGRDQGKNLIAVFPGVTDRDTVEA
MHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEAN
LIVVDWDPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=38.2352941176471, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19195; Mature: 19195

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQNERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRSPSGQESVVSGVRGRD
CCCCCCEEEEEEEHHHCCCCCEEEECCCCCCCEEEEEECCEEEECCCCHHHHHHCCCCCC
QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLG
CCCEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCCCCCCEEEEEHHHEEEEEECCEEEC
TVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEANLIVVDWDPDF
HHHHHHHCCCCCEEEEECCCCCCCCEECHHHHHCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MKQNERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRSPSGQESVVSGVRGRD
CCCCCCEEEEEEEHHHCCCCCEEEECCCCCCCEEEEEECCEEEECCCCHHHHHHCCCCCC
QGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLG
CCCEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCCCCCCEEEEEHHHEEEEEECCEEEC
TVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEANLIVVDWDPDF
HHHHHHHCCCCCEEEEECCCCCCCCEECHHHHHCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA