| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is hflK [H]
Identifier: 21241909
GI number: 21241909
Start: 1314971
End: 1316098
Strand: Direct
Name: hflK [H]
Synonym: XAC1155
Alternate gene names: 21241909
Gene position: 1314971-1316098 (Clockwise)
Preceding gene: 21241908
Following gene: 21241910
Centisome position: 25.41
GC content: 66.58
Gene sequence:
>1128_bases ATGGCCTGGAACACACCCGGCAACAAGGGCGGAGACGGCCCGGACCCCAACCGTCGCAGGTCCTGGGGCCCGCGCGGTGG TGGCAACGGTGGCGGTTGGGGCAATCTGCCCGCTCCGTTGAAGGAGCTGTTCGATGGCGGCGTGGGGCGCTGGATCCTGG TCGCGGTGGTGCTGATGGTGCTGTTCTCCAGCTTCCAGCTCATCGGCGAGCAGCAGCGTGGCGTGGTGCTGCGCTTCGGC CAGTTCTCGCGCATCCTGCAGCCCGGCCCGAACTTCAAGCTGCCCTGGCCGATCGAGTCGGTGCGCAAGGTCAATGCCAC CGAGATCAAGACCTTCAGCAACCAGGTGCCGGTGCTGACGCGCGACGAAAACATCGTCAACGTGTCGCTCAACGTGCAGT ACCAGATCAGCGACCCGCGCAAATACCTGTTCGGTTCGCGCAATGCCGATCTGGTGCTGGAGCAGGCCGCGCAAAGTGCC GTGCGTGAGCAGGTGGGGCGTTCGGACCTCAATACCGTGCTCAACAATCGCGGCCCGCTGGCGATCGCGTCCAAGGATCG TCTGCAGGCGGCGCTGGATGCCTATAACACCGGCCTGGCGGTCACCGGCGTGACCTTGCCGGATGCGCGCCCGCCGGAAG AAGTGAAGCCGGCCTTCGACGAGGTCAATGGTGCCCAGCAGGTGCGCGAGCGCCTGATCAACGAAGCGCAGGCCTACGCC GCCAAGGTGGTGCCCGAAGCGCGCGGCCAGGGGGCACGCACCCGTACCGGTGCCGAAGGCTACAAGCAGGCCACCATTTC GAAGGCCGAGGGTGATGCCGACCGCTTCACGCTGTTGCAGGCCCAGTATGCTGGCGCGCCGGAAGTCACCCGCAAGCGGC TGTGGCTGGAAACCGTGCAGAAGGTGCTGTCGGAGAACCGCAAGGTCATCGGTAGCGATGGCCGCCAGGTCATCTACGTG CCATTGCCGGCCGATGCCAGCAAGCCGGCCGCTTCCGGCGGCACTGCCAGCATGCCGTCGATGGTGCCCCAGGACGTGCT GTTGAATCCGCCGCAAAGCGCCAGTAGCGAGACCATCCGCAACCCGGAGCGCGGCCCGCGCCCGACCGGCCGTGAGGGAA CCGAATAA
Upstream 100 bases:
>100_bases TCAAAACGGTGTGTCTGCCCCATCTAGTAGAATCGGCGAATCAAACAACATGGCGGCACTGCGGGACTGGCCCGCACAGC CCCTCGATCATGGAGCGTGC
Downstream 100 bases:
>100_bases TGAAGAATTCGCTAGTCATCGGCCTGATCATCGCCGTGTTGCTGACCCTGATGGGCTCGGTATTCGTCGTGCGCGAAGAC CAGACCGCCATGGTGCTCAA
Product: integral membrane protease subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MAWNTPGNKGGDGPDPNRRRSWGPRGGGNGGGWGNLPAPLKELFDGGVGRWILVAVVLMVLFSSFQLIGEQQRGVVLRFG QFSRILQPGPNFKLPWPIESVRKVNATEIKTFSNQVPVLTRDENIVNVSLNVQYQISDPRKYLFGSRNADLVLEQAAQSA VREQVGRSDLNTVLNNRGPLAIASKDRLQAALDAYNTGLAVTGVTLPDARPPEEVKPAFDEVNGAQQVRERLINEAQAYA AKVVPEARGQGARTRTGAEGYKQATISKAEGDADRFTLLQAQYAGAPEVTRKRLWLETVQKVLSENRKVIGSDGRQVIYV PLPADASKPAASGGTASMPSMVPQDVLLNPPQSASSETIRNPERGPRPTGREGTE
Sequences:
>Translated_375_residues MAWNTPGNKGGDGPDPNRRRSWGPRGGGNGGGWGNLPAPLKELFDGGVGRWILVAVVLMVLFSSFQLIGEQQRGVVLRFG QFSRILQPGPNFKLPWPIESVRKVNATEIKTFSNQVPVLTRDENIVNVSLNVQYQISDPRKYLFGSRNADLVLEQAAQSA VREQVGRSDLNTVLNNRGPLAIASKDRLQAALDAYNTGLAVTGVTLPDARPPEEVKPAFDEVNGAQQVRERLINEAQAYA AKVVPEARGQGARTRTGAEGYKQATISKAEGDADRFTLLQAQYAGAPEVTRKRLWLETVQKVLSENRKVIGSDGRQVIYV PLPADASKPAASGGTASMPSMVPQDVLLNPPQSASSETIRNPERGPRPTGREGTE >Mature_374_residues AWNTPGNKGGDGPDPNRRRSWGPRGGGNGGGWGNLPAPLKELFDGGVGRWILVAVVLMVLFSSFQLIGEQQRGVVLRFGQ FSRILQPGPNFKLPWPIESVRKVNATEIKTFSNQVPVLTRDENIVNVSLNVQYQISDPRKYLFGSRNADLVLEQAAQSAV REQVGRSDLNTVLNNRGPLAIASKDRLQAALDAYNTGLAVTGVTLPDARPPEEVKPAFDEVNGAQQVRERLINEAQAYAA KVVPEARGQGARTRTGAEGYKQATISKAEGDADRFTLLQAQYAGAPEVTRKRLWLETVQKVLSENRKVIGSDGRQVIYVP LPADASKPAASGGTASMPSMVPQDVLLNPPQSASSETIRNPERGPRPTGREGTE
Specific function: HflC and HflK could encode or regulate a protease [H]
COG id: COG0330
COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the band 7/mec-2 family. HflK subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790616, Length=362, Percent_Identity=35.3591160220994, Blast_Score=195, Evalue=4e-51, Organism=Escherichia coli, GI1790617, Length=328, Percent_Identity=23.1707317073171, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1786697, Length=222, Percent_Identity=23.4234234234234, Blast_Score=65, Evalue=5e-12, Organism=Drosophila melanogaster, GI45550506, Length=218, Percent_Identity=25.2293577981651, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI281365664, Length=183, Percent_Identity=29.5081967213115, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI24657857, Length=183, Percent_Identity=29.5081967213115, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI62484448, Length=183, Percent_Identity=29.5081967213115, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI62484274, Length=183, Percent_Identity=29.5081967213115, Blast_Score=65, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001107 - InterPro: IPR010201 - InterPro: IPR020980 - InterPro: IPR001972 [H]
Pfam domain/function: PF01145 Band_7; PF12221 HflK_N [H]
EC number: NA
Molecular weight: Translated: 40593; Mature: 40462
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWNTPGNKGGDGPDPNRRRSWGPRGGGNGGGWGNLPAPLKELFDGGVGRWILVAVVLMV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH LFSSFQLIGEQQRGVVLRFGQFSRILQPGPNFKLPWPIESVRKVNATEIKTFSNQVPVLT HHHHHHHHCCCCCCEEEEECHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCEEE RDENIVNVSLNVQYQISDPRKYLFGSRNADLVLEQAAQSAVREQVGRSDLNTVLNNRGPL CCCCEEEEEEEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCE AIASKDRLQAALDAYNTGLAVTGVTLPDARPPEEVKPAFDEVNGAQQVRERLINEAQAYA EECCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH AKVVPEARGQGARTRTGAEGYKQATISKAEGDADRFTLLQAQYAGAPEVTRKRLWLETVQ HHHCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHEEEEHHHHCCCHHHHHHHHHHHHHH KVLSENRKVIGSDGRQVIYVPLPADASKPAASGGTASMPSMVPQDVLLNPPQSASSETIR HHHHCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHC NPERGPRPTGREGTE CCCCCCCCCCCCCCC >Mature Secondary Structure AWNTPGNKGGDGPDPNRRRSWGPRGGGNGGGWGNLPAPLKELFDGGVGRWILVAVVLMV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH LFSSFQLIGEQQRGVVLRFGQFSRILQPGPNFKLPWPIESVRKVNATEIKTFSNQVPVLT HHHHHHHHCCCCCCEEEEECHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCEEE RDENIVNVSLNVQYQISDPRKYLFGSRNADLVLEQAAQSAVREQVGRSDLNTVLNNRGPL CCCCEEEEEEEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCE AIASKDRLQAALDAYNTGLAVTGVTLPDARPPEEVKPAFDEVNGAQQVRERLINEAQAYA EECCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH AKVVPEARGQGARTRTGAEGYKQATISKAEGDADRFTLLQAQYAGAPEVTRKRLWLETVQ HHHCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHEEEEHHHHCCCHHHHHHHHHHHHHH KVLSENRKVIGSDGRQVIYVPLPADASKPAASGGTASMPSMVPQDVLLNPPQSASSETIR HHHHCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHC NPERGPRPTGREGTE CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]