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The map label for this gene is pol

Identifier: 21241834

GI number: 21241834

Start: 1228276

End: 1228677

Strand: Reverse

Name: pol

Synonym: XAC1072

Alternate gene names: NA

Gene position: 1228677-1228276 (Counterclockwise)

Preceding gene: 21241835

Following gene: 21241831

Centisome position: 23.74

GC content: 64.43

Gene sequence:

>402_bases
ATGCAATCCACCGCCCAGACGCTCCACGAACGCCAACTCCAGCTGGAGTCCGAATCAACCTCCCTCGGCATCGCTCGCTA
CGAAAAGGCCCGCGCCAATTCCGACGAGGCTGACACCGGCCCCGGCAAGAAGCTGGTCATGCAGGCGGTCGCGGCCACCG
GCCAGGCCATCCGTGAGTTTGTCGAGAAGGCCAAACAGGGCGGCGGTGGCCGGAGACACACGGCGGTGAAGTGGCTGGAG
CATCTCGACCCCGAGGGCTGCGCCTACCTAACTGCCGTGGTATGCGTGAACGCCCTTGCCGGTGAGCAGGCTAAGTTGAC
CGCCGTTGCGCGCTCTGTCGGCTCTGCCATCGCACAGGACGTGAACTACAAGAAGCTGCGTGATACGCCCAGGGTTCCGT
AG

Upstream 100 bases:

>100_bases
CGGCCGTGCCGGTTTCAACTGTTCAGCCAACACCTCCGCCTTCGGGCGGGGGCGTTTTTCGTTTGCCCATTCAATCTCAA
CTTCGGGACGCATTCCTAAT

Downstream 100 bases:

>100_bases
ACACTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCATGACGGCGTTGT
GGGTTGTAGAACATCTCGAT

Product: phage-related DNA-directed RNA polymerase

Products: NA

Alternate protein names: Phage-Related DNA-Directed RNA Polymerase

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MQSTAQTLHERQLQLESESTSLGIARYEKARANSDEADTGPGKKLVMQAVAATGQAIREFVEKAKQGGGGRRHTAVKWLE
HLDPEGCAYLTAVVCVNALAGEQAKLTAVARSVGSAIAQDVNYKKLRDTPRVP

Sequences:

>Translated_133_residues
MQSTAQTLHERQLQLESESTSLGIARYEKARANSDEADTGPGKKLVMQAVAATGQAIREFVEKAKQGGGGRRHTAVKWLE
HLDPEGCAYLTAVVCVNALAGEQAKLTAVARSVGSAIAQDVNYKKLRDTPRVP
>Mature_133_residues
MQSTAQTLHERQLQLESESTSLGIARYEKARANSDEADTGPGKKLVMQAVAATGQAIREFVEKAKQGGGGRRHTAVKWLE
HLDPEGCAYLTAVVCVNALAGEQAKLTAVARSVGSAIAQDVNYKKLRDTPRVP

Specific function: Unknown

COG id: COG5108

COG function: function code K; Mitochondrial DNA-directed RNA polymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14274; Mature: 14274

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSTAQTLHERQLQLESESTSLGIARYEKARANSDEADTGPGKKLVMQAVAATGQAIREF
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VEKAKQGGGGRRHTAVKWLEHLDPEGCAYLTAVVCVNALAGEQAKLTAVARSVGSAIAQD
HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
VNYKKLRDTPRVP
CCHHHHCCCCCCC
>Mature Secondary Structure
MQSTAQTLHERQLQLESESTSLGIARYEKARANSDEADTGPGKKLVMQAVAATGQAIREF
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VEKAKQGGGGRRHTAVKWLEHLDPEGCAYLTAVVCVNALAGEQAKLTAVARSVGSAIAQD
HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
VNYKKLRDTPRVP
CCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA