| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21241799
Identifier: 21241799
GI number: 21241799
Start: 1192979
End: 1194232
Strand: Direct
Name: 21241799
Synonym: XAC1034
Alternate gene names: NA
Gene position: 1192979-1194232 (Clockwise)
Preceding gene: 21241798
Following gene: 77748558
Centisome position: 23.05
GC content: 65.71
Gene sequence:
>1254_bases ATGAAGTCGAAGTCGATGTGCACCACGGTGGGTCTGATCGCCATGTGCCTGGCCGGCTCGGCCGCCGCTGCCGGCAAGCC GTTGTATCAAACCGGCCCTGCGCTGAGCCGCAGTGCCACCGCGACCGCTGCAGCCGAACCTTCGCTGCAACGCCTGTTGA GCGCCCCGTCCACGGCCAACGCGCAGGTGGTTCAGCTCGACGCCGCCGCGGTGACCGCCTCGGAAAAATTGCTGGAGCTG CAGCTGGATGGCCAAGCCATCACCGCCACCCAGGCCAAGGTCGATGCCCTGGAGGATGGCGACAGCGTGTGGTACGGCAA TCTCGGTCCGCGTGCCGGCACCCGCGCACGCACGCTCTCGGGCGTGGACCCGCTGAACTCGGCCATCTTGGTGCGCAGCG GCGACACCGTGACCGGCACGATTCGCTACGCCGGCAAGCTCTACCGCCTGCGTCCGCTGGCCGATGGCCGCCACGTGCTG GTGCAGGTGGATGAGCGACGCATGCCGCAGGAGCATCCGGCCGACTACAGCCTGCTGCCGAAGTTCGACATGCCCGGCGA TGGTCGCGTGACGGCTGCCGCCGCCTCATCAGGTAGCCCGGCCACCATTCGCGTGCTGGTGGTGGCCACCAACAAGGCCG TGACCGCTTACGGCGGCAACATGCAATCGCTGGTGCAACTGGCGGTGGCCGAAGCCAATCAGGGCTACATCAACAGCAAT GTCGGCATTACCTTGCAGCTGGCGCGCTACGAGACCACCAGCTACACCGAGACCGGCAACTTCACGACCGACCTGCAGCG TTTCCGCGTGACCAACGACGGCTACATGGACAGCATCCACACCAGCCGCAACACCTACACGGCCGATGTGGGAGTCATCG TGCTGGACAACAGCAGCTACTGCGGCCTGGCGTCGGGTATCGGCTCGAACGCCGCGAGCGCATTTGCGTCGGTGTACTGG GATTGCGCCACCGGCTACTACAGCTTCGCCCATGAAATCGGGCATCTGCAAAGCGCACGCCACGACGCCACCAACGACCC GAGCACCTCGCCGTACGCGTATGGCCACGGCTACCGCTACGGCAACAGCTGGCGCACCATCATGGCCTACGACTGCACCA GCGGCTGCCCGCGCCTGAACTACTGGTCCAACCCGAACATCAGCTACAACGGCGTGCCCATGGGCAATGCCAGCACCGCC GACAACCAACGCGTGCTGGTCAACACCAAGGCCACGATCGCCGCCTTCCGTTGA
Upstream 100 bases:
>100_bases AACTTGCATCCGGTACAGTCAAACGCGCCCTAATGGCGTCCCGGGGACAGGGGGCCGGTGTTTCACATCCGTAACTTTCA TGTCTTAGGAGAGAAAGACG
Downstream 100 bases:
>100_bases GTGGTTGCTGACCGATCCAAGCCCGGCCCGGCACCGCAAGTGCCGGGCTTTTTAGCTACACCTGCGCGCATGGATCGCGC AGACTAGGCGCATCGCCGGT
Product: peptidyl-Asp metalloendopeptidase
Products: NA
Alternate protein names: Endopeptidase Asp-N [H]
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MKSKSMCTTVGLIAMCLAGSAAAAGKPLYQTGPALSRSATATAAAEPSLQRLLSAPSTANAQVVQLDAAAVTASEKLLEL QLDGQAITATQAKVDALEDGDSVWYGNLGPRAGTRARTLSGVDPLNSAILVRSGDTVTGTIRYAGKLYRLRPLADGRHVL VQVDERRMPQEHPADYSLLPKFDMPGDGRVTAAAASSGSPATIRVLVVATNKAVTAYGGNMQSLVQLAVAEANQGYINSN VGITLQLARYETTSYTETGNFTTDLQRFRVTNDGYMDSIHTSRNTYTADVGVIVLDNSSYCGLASGIGSNAASAFASVYW DCATGYYSFAHEIGHLQSARHDATNDPSTSPYAYGHGYRYGNSWRTIMAYDCTSGCPRLNYWSNPNISYNGVPMGNASTA DNQRVLVNTKATIAAFR
Sequences:
>Translated_417_residues MKSKSMCTTVGLIAMCLAGSAAAAGKPLYQTGPALSRSATATAAAEPSLQRLLSAPSTANAQVVQLDAAAVTASEKLLEL QLDGQAITATQAKVDALEDGDSVWYGNLGPRAGTRARTLSGVDPLNSAILVRSGDTVTGTIRYAGKLYRLRPLADGRHVL VQVDERRMPQEHPADYSLLPKFDMPGDGRVTAAAASSGSPATIRVLVVATNKAVTAYGGNMQSLVQLAVAEANQGYINSN VGITLQLARYETTSYTETGNFTTDLQRFRVTNDGYMDSIHTSRNTYTADVGVIVLDNSSYCGLASGIGSNAASAFASVYW DCATGYYSFAHEIGHLQSARHDATNDPSTSPYAYGHGYRYGNSWRTIMAYDCTSGCPRLNYWSNPNISYNGVPMGNASTA DNQRVLVNTKATIAAFR >Mature_417_residues MKSKSMCTTVGLIAMCLAGSAAAAGKPLYQTGPALSRSATATAAAEPSLQRLLSAPSTANAQVVQLDAAAVTASEKLLEL QLDGQAITATQAKVDALEDGDSVWYGNLGPRAGTRARTLSGVDPLNSAILVRSGDTVTGTIRYAGKLYRLRPLADGRHVL VQVDERRMPQEHPADYSLLPKFDMPGDGRVTAAAASSGSPATIRVLVVATNKAVTAYGGNMQSLVQLAVAEANQGYINSN VGITLQLARYETTSYTETGNFTTDLQRFRVTNDGYMDSIHTSRNTYTADVGVIVLDNSSYCGLASGIGSNAASAFASVYW DCATGYYSFAHEIGHLQSARHDATNDPSTSPYAYGHGYRYGNSWRTIMAYDCTSGCPRLNYWSNPNISYNGVPMGNASTA DNQRVLVNTKATIAAFR
Specific function: Metalloprotease, specifically cleaves on the N-terminal side of aspartyl, glutamyl and cysteic acid residues [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M72 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: =3.4.24.33 [H]
Molecular weight: Translated: 44222; Mature: 44222
Theoretical pI: Translated: 7.83; Mature: 7.83
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKSMCTTVGLIAMCLAGSAAAAGKPLYQTGPALSRSATATAAAEPSLQRLLSAPSTAN CCCCHHHHHHHHHHHHHCCCCHHCCCCCHHCCCCCCCCCCCHHHCCHHHHHHHCCCCCCC AQVVQLDAAAVTASEKLLELQLDGQAITATQAKVDALEDGDSVWYGNLGPRAGTRARTLS EEEEEEEHHHHCCCCEEEEEEECCCEEEECHHHHHHCCCCCCEEECCCCCCCCCCCEEEC GVDPLNSAILVRSGDTVTGTIRYAGKLYRLRPLADGRHVLVQVDERRMPQEHPADYSLLP CCCCCCCEEEEECCCEEEEEEEECCEEEEEEECCCCCEEEEEEHHHCCCCCCCCCCEEEE KFDMPGDGRVTAAAASSGSPATIRVLVVATNKAVTAYGGNMQSLVQLAVAEANQGYINSN CCCCCCCCEEEEEECCCCCCEEEEEEEEEECCEEEEECCCHHHHHHHHHHHCCCCEEECC VGITLQLARYETTSYTETGNFTTDLQRFRVTNDGYMDSIHTSRNTYTADVGVIVLDNSSY CCEEEEEEEEECCCEECCCCCHHCEEEEEECCCCCCCCEECCCCEEEEEEEEEEECCCCC CGLASGIGSNAASAFASVYWDCATGYYSFAHEIGHLQSARHDATNDPSTSPYAYGHGYRY CCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCEEE GNSWRTIMAYDCTSGCPRLNYWSNPNISYNGVPMGNASTADNQRVLVNTKATIAAFR CCCEEEEEEEECCCCCCCCCCCCCCCCEECCEECCCCCCCCCCEEEEECCEEEEECC >Mature Secondary Structure MKSKSMCTTVGLIAMCLAGSAAAAGKPLYQTGPALSRSATATAAAEPSLQRLLSAPSTAN CCCCHHHHHHHHHHHHHCCCCHHCCCCCHHCCCCCCCCCCCHHHCCHHHHHHHCCCCCCC AQVVQLDAAAVTASEKLLELQLDGQAITATQAKVDALEDGDSVWYGNLGPRAGTRARTLS EEEEEEEHHHHCCCCEEEEEEECCCEEEECHHHHHHCCCCCCEEECCCCCCCCCCCEEEC GVDPLNSAILVRSGDTVTGTIRYAGKLYRLRPLADGRHVLVQVDERRMPQEHPADYSLLP CCCCCCCEEEEECCCEEEEEEEECCEEEEEEECCCCCEEEEEEHHHCCCCCCCCCCEEEE KFDMPGDGRVTAAAASSGSPATIRVLVVATNKAVTAYGGNMQSLVQLAVAEANQGYINSN CCCCCCCCEEEEEECCCCCCEEEEEEEEEECCEEEEECCCHHHHHHHHHHHCCCCEEECC VGITLQLARYETTSYTETGNFTTDLQRFRVTNDGYMDSIHTSRNTYTADVGVIVLDNSSY CCEEEEEEEEECCCEECCCCCHHCEEEEEECCCCCCCCEECCCCEEEEEEEEEEECCCCC CGLASGIGSNAASAFASVYWDCATGYYSFAHEIGHLQSARHDATNDPSTSPYAYGHGYRY CCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCEEE GNSWRTIMAYDCTSGCPRLNYWSNPNISYNGVPMGNASTADNQRVLVNTKATIAAFR CCCEEEEEEEECCCCCCCCCCCCCCCCEECCEECCCCCCCCCCEEEEECCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]