| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is ppc [H]
Identifier: 21241576
GI number: 21241576
Start: 958493
End: 961159
Strand: Direct
Name: ppc [H]
Synonym: XAC0806
Alternate gene names: 21241576
Gene position: 958493-961159 (Clockwise)
Preceding gene: 21241575
Following gene: 21241577
Centisome position: 18.52
GC content: 67.94
Gene sequence:
>2667_bases TTGCGCGACGATGTGCGTCGGCTCGGCGCGCTGGTGGGTGATCTGCTCGCCGAGCAGGTCTCTGCGGAATTCCTCGATGA AATCGAACGCGTGCGCACCACCGCCATCTCGCGGCGCGAAAGCGATGCCCCACCGTCCACGCTGAGCGAACAACTCGCCG GTCGGCAGCCGCGTGACGCCGAAGCGCTGGTCCGGGCATTCAGTACCTATTTCCAGGTGGTCAATATCGCCGAGCGCGTG CACCGCATCCGCCGCCGTCGCGAATATCAGCGCAGCGGCACCGACACGCCGCAGCCCGATGGCCTGCATGACGCATTGCG CCGGCTCAAGGCGCAGGGCGTGACCCTGGACGAACTCAGCCAATGGTTGCCGCGCATCGACGTGGAGCCGGTGTTCACCG CGCATCCCACCGAGGCGGTACGGCGCGCGCTGCTGGAAAAAGAGCAGCTGATGGTCGCCAGCCTGGTCGACAACCTGGAC GGCATGCGCACGCCCAACGAGCGTGCCAGCGATGCCGCGCGCTTCCGCATGGCCTTGACCGCGTCGTGGCAGACCGCCGA TTCCTCGCCGGTGCGCCCCACCGTGGACGACGAGCGCGAGCATGTGGGCTTCTACCTCACCCAGGTGCTCTACCGCGTCA TCCCGGTGATGTACGAAACGCTCGAACACGCCATCGAAGAAACCTACGGCAGCGTGCCGGCATTGCCGCGTCTGCTGCGC TTCGGCACCTGGGTGGGCGGCGACATGGACGGCAATCCCAACGTGGATGCCAAGACCATCGCCGGGACGCTGGACGCGCA GCGGCGCGCGGTGCTGGACCGTTATCAAAAAGAACTCTGGCAGTTGGCCAGCCTGCTCAGCCAATCGACCACGCTGGTAC AGGTGAGCGGCGAACTCACCGCGCAGCTGGAACGCTACCGCGCGCTGCTCCCCGACGCCGCCGCGCGTTCGCGCCCGCGC CATGGCGACATGCCGTACCGCCTGCTCAACGACCTGATGCGCGCGCGCCTGCAGGCCACCCTGGACGATGCCGATGGCGC CTATGCCGCTCCATCGGAGCTCGAACACGATCTGCAGCTGATCCTGGACAGCCTGCAGGCCAACAAGGGCCTGCATGCCG GTTGGTTCGCGGCACGGCGCCTGTTGTGGCGCGTGCGTAGCTTTGGTTTCCATCTGGCGCGGCTGGACGTGCGCCAGGAA TCGAGCGTGCATGCGCGCGCAGTGGCCGATGCCCTGGGCCAGACCGACTGGGACGCACAGGACGCCACCCAGCGCGCCGC CGTGCTCGGCCCGTATGCCGCAGGGCAAGACCCCTTGCCGCGCGTGGACGATGAAGGCAATGCACGGTTGGATGCGGTAT TCGCCGCGCTTGCCGATGCACGTACCCGCCACGGCGCCGATGCATTGGGCAGCTACATCATCTCGATGGCGCATAACCGC GCCGACGTGTTGACTGTGCTGGCACTGGCGCGGCGTGGCGGCCTGGTCGACGACGCCGGCGCTGTGCCGCTGGATATCGT GCCGCTGTTCGAAACCGTGGACGATCTGCGCGGCGGTACCGGCACCGTGCAGGACCTGCTGGCCGACCCGGTCTATCGCC AGCATCTGGCCGCACGCGGCGATACCCAGATGGTGATGCTGGGCTATTCGGACAGCGGCAAGGACGGCGGCATCGCCGCC TCGCGCTGGGGCCTGCAACGCGCGCAGGTCGAGCTGCTGGAAGCGGCCGCCGAGTTGGGCGTGCGGCTGACCTTCTTCCA CGGCCGAGGCGGCTCGATCGCGCGCGGCGGCGGCAAGACCAGCCGCGCGCTGGATGCCGCACCGCGCGGCAGCGTGGATG GGCGCCTGCGCGTTACCGAGCAGGGCGAGGTGATCCACCGCAAATATGGCATCCGCGCATTGGCGTTGCGCTCGCTGGAG CAGATGACCGGCGCGGTGCTGCTCTCGAGCCTGCGCCCGCGTGCGCCCGAGCCGCGCGAGGCGCGTTGGCGCCCGGTGAT GGATCTGGTGGCCGAACGCAGCACGGTCGCGTATCGCGCCTTCGTCGGCGCGCCGGAGTTCATGCAGTACTTCCGCCTGG CCACGCCGATCGATGTGATCGAACGCATGACGCTGGGTTCGCGCCCGTCGCGGCGGCTGGGCCAGGACGCGGCGCTGTCC AACCTGCGTGCGATTCCGTGGGTGTTTGCGTGGAGCCAGGCGCGTGCGGTGATTCCCGGCTGGTACGGCGTGGGCAGCGG CCTGCAGGCGGCGGTGGATGCCGGGCATGAAGAGACCTTGCGCGAAATGGCGCAGGACTGGCCGTTCTTCCGCACCTTTC TGGACGACATCGCCATGGTGTTGTCCAAGGGCGATCTGAACATCGCCGAGTTGTTCTCGCGCTTGTCCGGCGACCTGCAC ACGCGGTTTTTCCCGCTGATTCGCGACGAACTGGCATTGACCAAGGGCTGGGTGAAGGCGCTGCTGCAACAACAGTCGCT GTTGCAGCACGACCCGCGGCTGGCGTTGTCGATCCGCCTGCGCAATCCCTACATCGACCCGATCAGCGTGCTGCAGGTGG ATCTGCTGCAACGCTGGCGCGCCACCGATGGCGAAGACGAAGCGCTGCTGCGCGCGCTGGTGGCCTGCGTCAATGGCGTC TCGCAAGGCGTGCAGAACACCGGCTGA
Upstream 100 bases:
>100_bases CTTTTGGGTTAGTCTTCGACGACTTTGCGCTTGAAGAGGGTGTGCGTTTCCGATGAACGAGTACCGCAGCAGTCTTGTGT TCGCGACCCCCGATCTTCCC
Downstream 100 bases:
>100_bases TCGCATGGCCGGCTGCAGGGGCGGGCACGGAACAGCTCCACCGCAAGCAACGGCAACCACGCCGTTGGTCGGAGAGCGCA CGCAAACGGCAAGCGGACTC
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 888; Mature: 888
Protein sequence:
>888_residues MRDDVRRLGALVGDLLAEQVSAEFLDEIERVRTTAISRRESDAPPSTLSEQLAGRQPRDAEALVRAFSTYFQVVNIAERV HRIRRRREYQRSGTDTPQPDGLHDALRRLKAQGVTLDELSQWLPRIDVEPVFTAHPTEAVRRALLEKEQLMVASLVDNLD GMRTPNERASDAARFRMALTASWQTADSSPVRPTVDDEREHVGFYLTQVLYRVIPVMYETLEHAIEETYGSVPALPRLLR FGTWVGGDMDGNPNVDAKTIAGTLDAQRRAVLDRYQKELWQLASLLSQSTTLVQVSGELTAQLERYRALLPDAAARSRPR HGDMPYRLLNDLMRARLQATLDDADGAYAAPSELEHDLQLILDSLQANKGLHAGWFAARRLLWRVRSFGFHLARLDVRQE SSVHARAVADALGQTDWDAQDATQRAAVLGPYAAGQDPLPRVDDEGNARLDAVFAALADARTRHGADALGSYIISMAHNR ADVLTVLALARRGGLVDDAGAVPLDIVPLFETVDDLRGGTGTVQDLLADPVYRQHLAARGDTQMVMLGYSDSGKDGGIAA SRWGLQRAQVELLEAAAELGVRLTFFHGRGGSIARGGGKTSRALDAAPRGSVDGRLRVTEQGEVIHRKYGIRALALRSLE QMTGAVLLSSLRPRAPEPREARWRPVMDLVAERSTVAYRAFVGAPEFMQYFRLATPIDVIERMTLGSRPSRRLGQDAALS NLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVDAGHEETLREMAQDWPFFRTFLDDIAMVLSKGDLNIAELFSRLSGDLH TRFFPLIRDELALTKGWVKALLQQQSLLQHDPRLALSIRLRNPYIDPISVLQVDLLQRWRATDGEDEALLRALVACVNGV SQGVQNTG
Sequences:
>Translated_888_residues MRDDVRRLGALVGDLLAEQVSAEFLDEIERVRTTAISRRESDAPPSTLSEQLAGRQPRDAEALVRAFSTYFQVVNIAERV HRIRRRREYQRSGTDTPQPDGLHDALRRLKAQGVTLDELSQWLPRIDVEPVFTAHPTEAVRRALLEKEQLMVASLVDNLD GMRTPNERASDAARFRMALTASWQTADSSPVRPTVDDEREHVGFYLTQVLYRVIPVMYETLEHAIEETYGSVPALPRLLR FGTWVGGDMDGNPNVDAKTIAGTLDAQRRAVLDRYQKELWQLASLLSQSTTLVQVSGELTAQLERYRALLPDAAARSRPR HGDMPYRLLNDLMRARLQATLDDADGAYAAPSELEHDLQLILDSLQANKGLHAGWFAARRLLWRVRSFGFHLARLDVRQE SSVHARAVADALGQTDWDAQDATQRAAVLGPYAAGQDPLPRVDDEGNARLDAVFAALADARTRHGADALGSYIISMAHNR ADVLTVLALARRGGLVDDAGAVPLDIVPLFETVDDLRGGTGTVQDLLADPVYRQHLAARGDTQMVMLGYSDSGKDGGIAA SRWGLQRAQVELLEAAAELGVRLTFFHGRGGSIARGGGKTSRALDAAPRGSVDGRLRVTEQGEVIHRKYGIRALALRSLE QMTGAVLLSSLRPRAPEPREARWRPVMDLVAERSTVAYRAFVGAPEFMQYFRLATPIDVIERMTLGSRPSRRLGQDAALS NLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVDAGHEETLREMAQDWPFFRTFLDDIAMVLSKGDLNIAELFSRLSGDLH TRFFPLIRDELALTKGWVKALLQQQSLLQHDPRLALSIRLRNPYIDPISVLQVDLLQRWRATDGEDEALLRALVACVNGV SQGVQNTG >Mature_888_residues MRDDVRRLGALVGDLLAEQVSAEFLDEIERVRTTAISRRESDAPPSTLSEQLAGRQPRDAEALVRAFSTYFQVVNIAERV HRIRRRREYQRSGTDTPQPDGLHDALRRLKAQGVTLDELSQWLPRIDVEPVFTAHPTEAVRRALLEKEQLMVASLVDNLD GMRTPNERASDAARFRMALTASWQTADSSPVRPTVDDEREHVGFYLTQVLYRVIPVMYETLEHAIEETYGSVPALPRLLR FGTWVGGDMDGNPNVDAKTIAGTLDAQRRAVLDRYQKELWQLASLLSQSTTLVQVSGELTAQLERYRALLPDAAARSRPR HGDMPYRLLNDLMRARLQATLDDADGAYAAPSELEHDLQLILDSLQANKGLHAGWFAARRLLWRVRSFGFHLARLDVRQE SSVHARAVADALGQTDWDAQDATQRAAVLGPYAAGQDPLPRVDDEGNARLDAVFAALADARTRHGADALGSYIISMAHNR ADVLTVLALARRGGLVDDAGAVPLDIVPLFETVDDLRGGTGTVQDLLADPVYRQHLAARGDTQMVMLGYSDSGKDGGIAA SRWGLQRAQVELLEAAAELGVRLTFFHGRGGSIARGGGKTSRALDAAPRGSVDGRLRVTEQGEVIHRKYGIRALALRSLE QMTGAVLLSSLRPRAPEPREARWRPVMDLVAERSTVAYRAFVGAPEFMQYFRLATPIDVIERMTLGSRPSRRLGQDAALS NLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVDAGHEETLREMAQDWPFFRTFLDDIAMVLSKGDLNIAELFSRLSGDLH TRFFPLIRDELALTKGWVKALLQQQSLLQHDPRLALSIRLRNPYIDPISVLQVDLLQRWRATDGEDEALLRALVACVNGV SQGVQNTG
Specific function: Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=919, Percent_Identity=33.8411316648531, Blast_Score=398, Evalue=1e-111,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 98351; Mature: 98351
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDDVRRLGALVGDLLAEQVSAEFLDEIERVRTTAISRRESDAPPSTLSEQLAGRQPRDA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCH EALVRAFSTYFQVVNIAERVHRIRRRREYQRSGTDTPQPDGLHDALRRLKAQGVTLDELS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHH QWLPRIDVEPVFTAHPTEAVRRALLEKEQLMVASLVDNLDGMRTPNERASDAARFRMALT HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHE ASWQTADSSPVRPTVDDEREHVGFYLTQVLYRVIPVMYETLEHAIEETYGSVPALPRLLR ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FGTWVGGDMDGNPNVDAKTIAGTLDAQRRAVLDRYQKELWQLASLLSQSTTLVQVSGELT HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHH AQLERYRALLPDAAARSRPRHGDMPYRLLNDLMRARLQATLDDADGAYAAPSELEHDLQL HHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH ILDSLQANKGLHAGWFAARRLLWRVRSFGFHLARLDVRQESSVHARAVADALGQTDWDAQ HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHH DATQRAAVLGPYAAGQDPLPRVDDEGNARLDAVFAALADARTRHGADALGSYIISMAHNR HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCH ADVLTVLALARRGGLVDDAGAVPLDIVPLFETVDDLRGGTGTVQDLLADPVYRQHLAARG HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHCC DTQMVMLGYSDSGKDGGIAASRWGLQRAQVELLEAAAELGVRLTFFHGRGGSIARGGGKT CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC SRALDAAPRGSVDGRLRVTEQGEVIHRKYGIRALALRSLEQMTGAVLLSSLRPRAPEPRE HHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ARWRPVMDLVAERSTVAYRAFVGAPEFMQYFRLATPIDVIERMTLGSRPSRRLGQDAALS CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCHHHHH NLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVDAGHEETLREMAQDWPFFRTFLDDIAMV HCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHH LSKGDLNIAELFSRLSGDLHTRFFPLIRDELALTKGWVKALLQQQSLLQHDPRLALSIRL HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE RNPYIDPISVLQVDLLQRWRATDGEDEALLRALVACVNGVSQGVQNTG CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRDDVRRLGALVGDLLAEQVSAEFLDEIERVRTTAISRRESDAPPSTLSEQLAGRQPRDA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCH EALVRAFSTYFQVVNIAERVHRIRRRREYQRSGTDTPQPDGLHDALRRLKAQGVTLDELS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHH QWLPRIDVEPVFTAHPTEAVRRALLEKEQLMVASLVDNLDGMRTPNERASDAARFRMALT HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHE ASWQTADSSPVRPTVDDEREHVGFYLTQVLYRVIPVMYETLEHAIEETYGSVPALPRLLR ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FGTWVGGDMDGNPNVDAKTIAGTLDAQRRAVLDRYQKELWQLASLLSQSTTLVQVSGELT HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHH AQLERYRALLPDAAARSRPRHGDMPYRLLNDLMRARLQATLDDADGAYAAPSELEHDLQL HHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH ILDSLQANKGLHAGWFAARRLLWRVRSFGFHLARLDVRQESSVHARAVADALGQTDWDAQ HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHH DATQRAAVLGPYAAGQDPLPRVDDEGNARLDAVFAALADARTRHGADALGSYIISMAHNR HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCH ADVLTVLALARRGGLVDDAGAVPLDIVPLFETVDDLRGGTGTVQDLLADPVYRQHLAARG HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHCC DTQMVMLGYSDSGKDGGIAASRWGLQRAQVELLEAAAELGVRLTFFHGRGGSIARGGGKT CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC SRALDAAPRGSVDGRLRVTEQGEVIHRKYGIRALALRSLEQMTGAVLLSSLRPRAPEPRE HHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC ARWRPVMDLVAERSTVAYRAFVGAPEFMQYFRLATPIDVIERMTLGSRPSRRLGQDAALS CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCHHHHH NLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVDAGHEETLREMAQDWPFFRTFLDDIAMV HCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHH LSKGDLNIAELFSRLSGDLHTRFFPLIRDELALTKGWVKALLQQQSLLQHDPRLALSIRL HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE RNPYIDPISVLQVDLLQRWRATDGEDEALLRALVACVNGVSQGVQNTG CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]