| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is xcp [H]
Identifier: 21241565
GI number: 21241565
Start: 943085
End: 944842
Strand: Direct
Name: xcp [H]
Synonym: XAC0795
Alternate gene names: 21241565
Gene position: 943085-944842 (Clockwise)
Preceding gene: 21241564
Following gene: 21241567
Centisome position: 18.22
GC content: 67.01
Gene sequence:
>1758_bases ATGGTGACGCGCTCTTTCTCTCACGCCGTCCTGGCTTGCGCCGTTGCGCTGGGTATGATCGGTATCGCGCCGGCAGCCGA ACAGGCACCTGCGCAACTGGCCGTCGGTGGCGCGCTGGCGCCGCAACGCATCCTGCAGGTGGGATTGGTGCTCAAGCCAC AGGTGGCCATGCGCCAGCAACATGCGGCGGTGGAGCAGTGGTTGATGCGCGATGGCGGCGATCCGCTGTTGCGCGGTCAA CTGGCCCGCGCATCGGCTGCTTCCACCAGCCAGATCGCACAGGTCAAGGCCTATCTGAGCCGGTATGGCATCACCGATGT GCGCCCGGCCACCGATGGACGCTTGCTGCAAGTCCGTGCGACAGCGGCGGCATTGCAGGCCGCCCTTGGCACCCCGCTGC GTGTAGTGAGTGCCGATGGCCGCGTCGGCATTGCCGCCGCGCAGGGCGCGGTCGCAGTGCCGGCAGGCTTGCAGGCAGTG GTGCAAGGCGTGGTTGGCCTGGACGGTACCGCCGGCGCAAAGGTCGCGCCGCACGGGGCGCCGCTGAGCGCCGCGCGCAC ATCGTTATCGAACAGTAGCGCCGTGGTGGCCGCCAATAGCGGCGGCGCGGAAGTCGTGCGCCACAGCATCGAAGAGCTCA ATAGCGCCTACGGCGCCGATACGCTGGCGCCGGCCAGCGATATCGTCGGCGCGGTCATTGCCGCCGGCAATCTGGAACAG ACCCTCGTGCGTCTGCAGAGCTTCCAGGCCCTGCACGGCCTGCACACCCCGGTCACGGTGGTGACGGTGGGCGAACCCGG TGCACCGGGCTATCAGTCCAACGCTGCCAGCAAGGATTCCGAAGTCGAGTGGGACATGGATACCCAGTTGCTGGTCGGCA GCGCCGGCGGGTTGAAGCGCCTGATCATCTACAACATCCCGGATTTTTCCTGGAACAGCATGATCGATGGCATGGCGCGC GCGGCCGACGACAACCTGGCCCGCGTGGTCAGCATGTCGATCTATGGGCAGGAAATCCAGGTCGACGACGCGGTCTTCCA GGCCATGGACGCCAGCCTGACCAAGGCGGTGCGCCAGGGGCAGAACTTCGTGATCTGCAGCGGCGACGATGGCGTCTACC TGCCGCTGAGCGCACGCGCCAACGCGCCTTATTACGACACGCTGGCGGGGCGCCCGGACCTGCGCCAGGTCGGTTGGCCG GCCTCGCACCGCTACGCGATCGCGGTGGGCGCCACCGAGTTGCTGACCCAGGGCGGTAACCCCGGCAGCTACGCCTCCGA GCGCGTCTGGAATGCCGGTGTCGGCCGCCAACTCAGCCAGGGCGGCGTGAGCAAGATTGCCTATGCGCCGCAGTGGCAGC GCACCCTGCTGCCGGGGCAGACGGCCTCCGGCTACCGCGCTGTACCCGATGTCAGCTTCAATGGCTCGTTCTACAGCAGT GCGCAGATCCGCGGCACCGATGCGCAGGGTAACGAGGCTGCCTGGTATGTGTGGGGGACCAGTGCCGCCACCCCGACCTT CGCCGGCTATATCGCCCGGCTGTTGCAGTCGCATCCCAATCTGGGCTTCGTCGCGCCGCAGATCTATCAGTACGCGAGCC AGCGCCACGATGCGCAGCGCGCCCATGACGTCGTGGTCGGCAGTAATGGCCTGTATCGCGATGGATACAACGCGAGCTAC GGTTGGGACTTCGCGTCGGGCTGGGGCAGCATGAACATCGGCGACTTCGACCGTTTCCTGACGCAGGCATCGCCATGA
Upstream 100 bases:
>100_bases ATCGTTTTACGCACACAGAGTTCGCACTGTCGCGTCTGAAATCACTGCCGCCTCGTGAGAATCCGCAGCCCGTTAACTCA CGATCAATGGCGGCAAACGA
Downstream 100 bases:
>100_bases CCTTCATTGCGCGGTGAGCGTGCCGCGCGTGCGGGCCTCCAACCACCGCCATGCCGGTCTTGGGTCACGATGCTGACGCT GAGCGTGGCGGCTTGCGGGC
Product: protease
Products: NA
Alternate protein names: Pepstatin-insensitive carboxyl proteinase; Pseudomonapepsin [H]
Number of amino acids: Translated: 585; Mature: 585
Protein sequence:
>585_residues MVTRSFSHAVLACAVALGMIGIAPAAEQAPAQLAVGGALAPQRILQVGLVLKPQVAMRQQHAAVEQWLMRDGGDPLLRGQ LARASAASTSQIAQVKAYLSRYGITDVRPATDGRLLQVRATAAALQAALGTPLRVVSADGRVGIAAAQGAVAVPAGLQAV VQGVVGLDGTAGAKVAPHGAPLSAARTSLSNSSAVVAANSGGAEVVRHSIEELNSAYGADTLAPASDIVGAVIAAGNLEQ TLVRLQSFQALHGLHTPVTVVTVGEPGAPGYQSNAASKDSEVEWDMDTQLLVGSAGGLKRLIIYNIPDFSWNSMIDGMAR AADDNLARVVSMSIYGQEIQVDDAVFQAMDASLTKAVRQGQNFVICSGDDGVYLPLSARANAPYYDTLAGRPDLRQVGWP ASHRYAIAVGATELLTQGGNPGSYASERVWNAGVGRQLSQGGVSKIAYAPQWQRTLLPGQTASGYRAVPDVSFNGSFYSS AQIRGTDAQGNEAAWYVWGTSAATPTFAGYIARLLQSHPNLGFVAPQIYQYASQRHDAQRAHDVVVGSNGLYRDGYNASY GWDFASGWGSMNIGDFDRFLTQASP
Sequences:
>Translated_585_residues MVTRSFSHAVLACAVALGMIGIAPAAEQAPAQLAVGGALAPQRILQVGLVLKPQVAMRQQHAAVEQWLMRDGGDPLLRGQ LARASAASTSQIAQVKAYLSRYGITDVRPATDGRLLQVRATAAALQAALGTPLRVVSADGRVGIAAAQGAVAVPAGLQAV VQGVVGLDGTAGAKVAPHGAPLSAARTSLSNSSAVVAANSGGAEVVRHSIEELNSAYGADTLAPASDIVGAVIAAGNLEQ TLVRLQSFQALHGLHTPVTVVTVGEPGAPGYQSNAASKDSEVEWDMDTQLLVGSAGGLKRLIIYNIPDFSWNSMIDGMAR AADDNLARVVSMSIYGQEIQVDDAVFQAMDASLTKAVRQGQNFVICSGDDGVYLPLSARANAPYYDTLAGRPDLRQVGWP ASHRYAIAVGATELLTQGGNPGSYASERVWNAGVGRQLSQGGVSKIAYAPQWQRTLLPGQTASGYRAVPDVSFNGSFYSS AQIRGTDAQGNEAAWYVWGTSAATPTFAGYIARLLQSHPNLGFVAPQIYQYASQRHDAQRAHDVVVGSNGLYRDGYNASY GWDFASGWGSMNIGDFDRFLTQASP >Mature_585_residues MVTRSFSHAVLACAVALGMIGIAPAAEQAPAQLAVGGALAPQRILQVGLVLKPQVAMRQQHAAVEQWLMRDGGDPLLRGQ LARASAASTSQIAQVKAYLSRYGITDVRPATDGRLLQVRATAAALQAALGTPLRVVSADGRVGIAAAQGAVAVPAGLQAV VQGVVGLDGTAGAKVAPHGAPLSAARTSLSNSSAVVAANSGGAEVVRHSIEELNSAYGADTLAPASDIVGAVIAAGNLEQ TLVRLQSFQALHGLHTPVTVVTVGEPGAPGYQSNAASKDSEVEWDMDTQLLVGSAGGLKRLIIYNIPDFSWNSMIDGMAR AADDNLARVVSMSIYGQEIQVDDAVFQAMDASLTKAVRQGQNFVICSGDDGVYLPLSARANAPYYDTLAGRPDLRQVGWP ASHRYAIAVGATELLTQGGNPGSYASERVWNAGVGRQLSQGGVSKIAYAPQWQRTLLPGQTASGYRAVPDVSFNGSFYSS AQIRGTDAQGNEAAWYVWGTSAATPTFAGYIARLLQSHPNLGFVAPQIYQYASQRHDAQRAHDVVVGSNGLYRDGYNASY GWDFASGWGSMNIGDFDRFLTQASP
Specific function: Unknown
COG id: COG4934
COG function: function code O; Predicted protease
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S53 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015366 - InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR009020 [H]
Pfam domain/function: PF00082 Peptidase_S8; PF09286 Pro-kuma_activ [H]
EC number: =3.4.21.100 [H]
Molecular weight: Translated: 61073; Mature: 61073
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTRSFSHAVLACAVALGMIGIAPAAEQAPAQLAVGGALAPQRILQVGLVLKPQVAMRQQ CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHCCEECCHHHHHHH HAAVEQWLMRDGGDPLLRGQLARASAASTSQIAQVKAYLSRYGITDVRPATDGRLLQVRA HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHH TAAALQAALGTPLRVVSADGRVGIAAAQGAVAVPAGLQAVVQGVVGLDGTAGAKVAPHGA HHHHHHHHHCCCEEEEECCCCEEEEECCCCEECCHHHHHHHHHHHCCCCCCCCEECCCCC PLSAARTSLSNSSAVVAANSGGAEVVRHSIEELNSAYGADTLAPASDIVGAVIAAGNLEQ CHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHH TLVRLQSFQALHGLHTPVTVVTVGEPGAPGYQSNAASKDSEVEWDMDTQLLVGSAGGLKR HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCEE LIIYNIPDFSWNSMIDGMARAADDNLARVVSMSIYGQEIQVDDAVFQAMDASLTKAVRQG EEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCC QNFVICSGDDGVYLPLSARANAPYYDTLAGRPDLRQVGWPASHRYAIAVGATELLTQGGN CCEEEECCCCCEEEEEECCCCCCCHHCCCCCCCHHHCCCCCCCCEEEEECHHHHHHCCCC PGSYASERVWNAGVGRQLSQGGVSKIAYAPQWQRTLLPGQTASGYRAVPDVSFNGSFYSS CCCHHHHHHHCCCCCCHHHCCCCHHEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEECC AQIRGTDAQGNEAAWYVWGTSAATPTFAGYIARLLQSHPNLGFVAPQIYQYASQRHDAQR CEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH AHDVVVGSNGLYRDGYNASYGWDFASGWGSMNIGDFDRFLTQASP HHEEEECCCCCEECCCCCCCCCCHHCCCCCCCCCHHHHHHHCCCC >Mature Secondary Structure MVTRSFSHAVLACAVALGMIGIAPAAEQAPAQLAVGGALAPQRILQVGLVLKPQVAMRQQ CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHCCEECCHHHHHHH HAAVEQWLMRDGGDPLLRGQLARASAASTSQIAQVKAYLSRYGITDVRPATDGRLLQVRA HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHH TAAALQAALGTPLRVVSADGRVGIAAAQGAVAVPAGLQAVVQGVVGLDGTAGAKVAPHGA HHHHHHHHHCCCEEEEECCCCEEEEECCCCEECCHHHHHHHHHHHCCCCCCCCEECCCCC PLSAARTSLSNSSAVVAANSGGAEVVRHSIEELNSAYGADTLAPASDIVGAVIAAGNLEQ CHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHH TLVRLQSFQALHGLHTPVTVVTVGEPGAPGYQSNAASKDSEVEWDMDTQLLVGSAGGLKR HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCEE LIIYNIPDFSWNSMIDGMARAADDNLARVVSMSIYGQEIQVDDAVFQAMDASLTKAVRQG EEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCC QNFVICSGDDGVYLPLSARANAPYYDTLAGRPDLRQVGWPASHRYAIAVGATELLTQGGN CCEEEECCCCCEEEEEECCCCCCCHHCCCCCCCHHHCCCCCCCCEEEEECHHHHHHCCCC PGSYASERVWNAGVGRQLSQGGVSKIAYAPQWQRTLLPGQTASGYRAVPDVSFNGSFYSS CCCHHHHHHHCCCCCCHHHCCCCHHEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEECC AQIRGTDAQGNEAAWYVWGTSAATPTFAGYIARLLQSHPNLGFVAPQIYQYASQRHDAQR CEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH AHDVVVGSNGLYRDGYNASYGWDFASGWGSMNIGDFDRFLTQASP HHEEEECCCCCEECCCCCCCCCCHHCCCCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7929375; 8576087; 10488127; 11747435; 11323721 [H]