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The map label for this gene is ybcM [C]

Identifier: 21241498

GI number: 21241498

Start: 866458

End: 867252

Strand: Reverse

Name: ybcM [C]

Synonym: XAC0727

Alternate gene names: 21241498

Gene position: 867252-866458 (Counterclockwise)

Preceding gene: 21241500

Following gene: 21241497

Centisome position: 16.76

GC content: 67.8

Gene sequence:

>795_bases
ATGACCAGCCTGATGCACTGCGAGCGCGCAGAAGGCTTCGCCTGCGTGAGCGCGCGGCGCGAACATGGGGCCCGTTCGGT
GGATCTGATCCAGCCGCAGTTCGCGATTCTGCTGCAAGGCCGCCAGCAGGTGAGCAGCGCGACGCAATCGCTGCAGCTGC
TGCCGGGCGATCTGTTTCTGGCGACGCGCCGTTGCCGGATCGATGTGATCAATACGCCCGACCCACAGACCGGGCTCTAC
ATGAGCGCGGTGGTCCCTCTCTGCGAAGAGGCGCTGGCCGCTGCGCGCGCCTTATGGACCGAGCCGCTGCCTGAGGCCGG
CGCCGACATTGCACGGTTGCCGGCGATCGATTTCGAGTTGGCGCTGCGGCAATGGCGCGATGCGCTGCAACACGGTCTGT
ACACCGAAGCACGCCTGGCGTTGGCCGCATTGGTCGTCAATGTCTGTCGTCGCGGCCACGGCGGCCTGCTGCTGCCGCCG
GCACCAGGCATCGCCGAGCAGGTACGCGCGCTGATCGCCGCGCAACCGCAGCGGGGGTGGCGCTCGCGCGATATCGAAGA
CCGCCTGGGCATCAGTGGCGCCACCTTGCGCCGCCATCTGGCCGCCGAACAACGCTCGCTGCGCGAACTGATCACCGACG
CGCGACTGGCGCACGCGATGGGCCTGCTCTACAGCACGCGCTGGCCGCTCAAGACCGTGGCCGCGCGTGCCGGCTATCGC
TCTACCCGCAGCTTCAGTCAGCGATTCCAGCAGCGTTACGGACTGGATCCTGCCAGCATCGGCAATAGCCGCTAG

Upstream 100 bases:

>100_bases
GAGATGCACCAGGTTCGCCCGCGGCCGCGCACCCGCAATCCTGTAGCATCGCCCAGCCATGACCGCTGCACCCACACCCA
CCGACACCCTGCTCGCGCAG

Downstream 100 bases:

>100_bases
ATCGCCGGAGCGAGCGCTTCGCGCAGCACAATGAGCGAAGCGCGCAGCTCGCTGGCGCCAACATGGCGACATCGCGGCGG
TTGCCGCCTGCTCTGGAGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC-Type Regulatory Protein

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTSLMHCERAEGFACVSARREHGARSVDLIQPQFAILLQGRQQVSSATQSLQLLPGDLFLATRRCRIDVINTPDPQTGLY
MSAVVPLCEEALAAARALWTEPLPEAGADIARLPAIDFELALRQWRDALQHGLYTEARLALAALVVNVCRRGHGGLLLPP
APGIAEQVRALIAAQPQRGWRSRDIEDRLGISGATLRRHLAAEQRSLRELITDARLAHAMGLLYSTRWPLKTVAARAGYR
STRSFSQRFQQRYGLDPASIGNSR

Sequences:

>Translated_264_residues
MTSLMHCERAEGFACVSARREHGARSVDLIQPQFAILLQGRQQVSSATQSLQLLPGDLFLATRRCRIDVINTPDPQTGLY
MSAVVPLCEEALAAARALWTEPLPEAGADIARLPAIDFELALRQWRDALQHGLYTEARLALAALVVNVCRRGHGGLLLPP
APGIAEQVRALIAAQPQRGWRSRDIEDRLGISGATLRRHLAAEQRSLRELITDARLAHAMGLLYSTRWPLKTVAARAGYR
STRSFSQRFQQRYGLDPASIGNSR
>Mature_263_residues
TSLMHCERAEGFACVSARREHGARSVDLIQPQFAILLQGRQQVSSATQSLQLLPGDLFLATRRCRIDVINTPDPQTGLYM
SAVVPLCEEALAAARALWTEPLPEAGADIARLPAIDFELALRQWRDALQHGLYTEARLALAALVVNVCRRGHGGLLLPPA
PGIAEQVRALIAAQPQRGWRSRDIEDRLGISGATLRRHLAAEQRSLRELITDARLAHAMGLLYSTRWPLKTVAARAGYRS
TRSFSQRFQQRYGLDPASIGNSR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786758, Length=248, Percent_Identity=21.7741935483871, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786776, Length=128, Percent_Identity=25.78125, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29133; Mature: 29002

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLMHCERAEGFACVSARREHGARSVDLIQPQFAILLQGRQQVSSATQSLQLLPGDLFL
CCCCCCHHHCCCHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ATRRCRIDVINTPDPQTGLYMSAVVPLCEEALAAARALWTEPLPEAGADIARLPAIDFEL
HHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHH
ALRQWRDALQHGLYTEARLALAALVVNVCRRGHGGLLLPPAPGIAEQVRALIAAQPQRGW
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCCCCCCC
RSRDIEDRLGISGATLRRHLAAEQRSLRELITDARLAHAMGLLYSTRWPLKTVAARAGYR
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCH
STRSFSQRFQQRYGLDPASIGNSR
HHHHHHHHHHHHHCCCHHCCCCCC
>Mature Secondary Structure 
TSLMHCERAEGFACVSARREHGARSVDLIQPQFAILLQGRQQVSSATQSLQLLPGDLFL
CCCCCHHHCCCHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ATRRCRIDVINTPDPQTGLYMSAVVPLCEEALAAARALWTEPLPEAGADIARLPAIDFEL
HHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHH
ALRQWRDALQHGLYTEARLALAALVVNVCRRGHGGLLLPPAPGIAEQVRALIAAQPQRGW
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCCCCCCC
RSRDIEDRLGISGATLRRHLAAEQRSLRELITDARLAHAMGLLYSTRWPLKTVAARAGYR
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCH
STRSFSQRFQQRYGLDPASIGNSR
HHHHHHHHHHHHHCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA