| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is fyuA [C]
Identifier: 21241487
GI number: 21241487
Start: 851421
End: 853970
Strand: Direct
Name: fyuA [C]
Synonym: XAC0716
Alternate gene names: 21241487
Gene position: 851421-853970 (Clockwise)
Preceding gene: 21241486
Following gene: 21241496
Centisome position: 16.45
GC content: 61.02
Gene sequence:
>2550_bases TTGGCCTGCGTCGCAAGCCTTCCCGCATTTGCGCAGGAGCAGCCCGCACCCGCGCAGCAACAGACACCACCACAAACCGA TCCCTCGGTTTCCACCCTGGACGAAATCAAGGTGGTGGGTTACCAGGCCAGCCTGGGCAAGGCGCTCAACGTCAAGCGCA ACGCCGATGCGATCGTCGACGCGATCAGCGCCGAAGACATCGGCAAGTTTCCAGATACCAATGTCGCCGAATCGCTGTCG CGGTTGTCCGGTATCACCGTGGACAGGCAGTTCGGCGAAGGCGAAAAAGTCAGCATCCTGGGCACCGATCCGGCGCTCAA CCGTGTGCTGCTCAACGGCCAGACCATTGCATCGACCAGTTGGGGCGGCGACCCCAACGACCCGGACAGCCGCTCGTTCA ACTACAGCACCCTGGCGCCGGAAGTGGTCGGCTTGATGGAGGTCTACAAGACGCCCGAAGCGCGCATCGACGAGGGTTCC ATCGGCGGCACCGTGATCGTGCATACGCGCAAACCGCTGGATCTGGATCGCAATACGCTCACCGGGACCGTGAGCTATGG CTACAACGATCGCTCCGACGAAGGCAAGCCGAATGCCTCGGCGCTGTATAGCTGGAAGAATCAGGACCAAACCCTGGGCG TGCTTACCTCGGTGATGCATTCGCAGCGTGTCCTGCGCCGCGACGGCGTTGAAATTTTCGGCTACGACAATGTGCAGGGC GCCGGGTTTCCGCCGGGTGTGGTCGGCAACAACACCGGCGTGTTTCCGACGTCGATCAACACGGCGTTGTTCCAGCAAAC GCGCAAGCGCGACGGTGTCAGCGCGGCGCTGCAGTGGAAGCCGGACAGCGATTTCGAGCTCAATCTGACTGGCCTGTATG TCAAGGAAAGCTTCGATAACTACAACCAGAGCCGCTACGGTTACTGGGGCTCGACGCCGGGCGATGCGCAGGCCTTGGGC TTCGAGAACGGTATCGCCACCTCGGGTACCTTCGGCGACCAGTCCAACACCTATCTCGACGGCTATCTGCGCAATAGCCA GGTCAGCACCGGCAGCATCCACCTGCGCACCGACTGGCATGGCGATGGGTGGAACGCCTCCAGCCAGGTGGGTTACACCA GTTCGCAAGGCGGCGCCGAGCGTATCTACGGCATCCAGTTCCGCAATCTGGCCGGCTACAGCTACACCATCGACGGGCGC CGTACCGCGATGGACTACAGCACCGATCCCACCAATGCGGCGGCGATGCAGCTCAACAACGCCTCGGCCAGTCACAGCCC GCAGTACGACAAGGAGCGCTATCTGCAGCTGGATTTCGATCATGCGGTGGAGTGGGGGCCGTTTACGCAGATCCTCACCG GCATCAAGCTCACCAATCACGCCGCCGGGCAATCGTCCTACAGCCGTACCTGGACCCCGAACGATGGCAGCACGCTGGCG GCATTCTCGCCGGGCACCACGCCCTCGGGCTATCTGGATGGGCTGTCGACCAGCGCCGACATGCAACGCTGGTCGACCAT CGACAGCGGTGCGATCAGCCGGTATATCAGCGGACTGGAAGGCGACGACGGTCTGCCGATCAGCTATGCCGGCAACTACA GCATCGAGGAGCAGAACCGTGCGTGGTTCCTGCAAGGCAACTTCTCCGGCGAGCGGTATCGCGGCAACATCGGCGTGCGC TATGTGCATTCGCGCGATTCAACAGATGGCTTCAGCTATGCGCCGGGTGGCGGTTACACGCCGGTCAACTTTCTCAGCAG CTACGGCAAATGGTTGCCTTCGTTCAATATCGCCTACGACCTGCGCGACGACCTGATGCTGCGATTTGCCGCCTCCAAAG TGATCGCGCGGCCGCGCTACACCAACATGACGCCGTACGTGGCCACCGACGACACCACGCTGACGGCGTCGACCGGCAAC CCAGGACTGAGCCCGTACGAGTCGACCAACCTCGGTGCATCGCTGGAGTGGTATTTCTCCGACAGCAGCCTGCTCAGCGG CGAATTCTTCTCGCGCGACATCTCCAACTACATCCTGACCACGGTGCAGGATCGTGTGTTCTTCAATAACGCCACCGGCG GCTCGAGCACCTACCAGACATCGGTACCTACCAACGCCGGCGATGCCAGGGTGCGCGGTGTTGCGCTCAATCTGCAGCAC AATTTCGGCAATGGCTTCGGCGTGGTGGCCAACTACACCTATTCCGATTCCAAGACCGACGGCGATTACAGCCTGCCGTA CAACTCGCGCAATGCCTACAACGTCAGCCCGTACTACGAACAAGGCAAGTGGAGCGCACGGGTGAATCTGGGTTGGCGCT CGGAATACTTCACCCAGATTGGCAGGCTCAACGGGCAGCAGATGACCGACGCGTTTACGCAAGTCGATGCGTCATTCGGC TACCAGGCCACCGAGCGACTGCGCGTGGCGCTGGAAGCCACCAACCTGCTGGACGAAACCTACTTCAGTTACATCGGCAA CAAGAACCAGCCGTACTACATCTACAAGAACGGTCGCTCTTTCATGTTGAGCCTGAATTTCAAGCTGTAA
Upstream 100 bases:
>100_bases CGCTTTGTCCCCTTGTGTTCCGGTATCTGCGTCCGTCGACCCACTGCGCCGCTCACCATTGAGCGCGGCTGTCAGGCGTC TGCTCATAGGTGGCGCCAGC
Downstream 100 bases:
>100_bases TGCCCGGCCAGGGCGGCTGCTTTGTGCAGCCGCCTTTATCTCGTGGCGGACAACTAGACTCGCTTGAGTTCCTGGCTTCG AAGGGCAGATTCCGTCAGCC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Nb-Dependent Receptor; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; NB-Dependent Receptor Subfamily; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Outer Membrane Receptor Protein; Outer Membrane Protein; NB-Dependent Receptor Subfamily Protein; Outer Membrane Insertion C-Terminal Signal; NB Dependent Receptor-Related Protein; Nucleoside Diphosphate Kinase; Crossover Junction Endodeoxyribonuclease RuvC; NB Dependent Receptor; NB-Dependent Maltose Outer Membrane Transporter MalA; NB Dependent Receptor For Iron Chelates; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; 3-Dehydroquinate Synthase; Outer Membrane Receptor Family Protein; 1-(5-Phosphoribosyl)-5-; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 849; Mature: 848
Protein sequence:
>849_residues MACVASLPAFAQEQPAPAQQQTPPQTDPSVSTLDEIKVVGYQASLGKALNVKRNADAIVDAISAEDIGKFPDTNVAESLS RLSGITVDRQFGEGEKVSILGTDPALNRVLLNGQTIASTSWGGDPNDPDSRSFNYSTLAPEVVGLMEVYKTPEARIDEGS IGGTVIVHTRKPLDLDRNTLTGTVSYGYNDRSDEGKPNASALYSWKNQDQTLGVLTSVMHSQRVLRRDGVEIFGYDNVQG AGFPPGVVGNNTGVFPTSINTALFQQTRKRDGVSAALQWKPDSDFELNLTGLYVKESFDNYNQSRYGYWGSTPGDAQALG FENGIATSGTFGDQSNTYLDGYLRNSQVSTGSIHLRTDWHGDGWNASSQVGYTSSQGGAERIYGIQFRNLAGYSYTIDGR RTAMDYSTDPTNAAAMQLNNASASHSPQYDKERYLQLDFDHAVEWGPFTQILTGIKLTNHAAGQSSYSRTWTPNDGSTLA AFSPGTTPSGYLDGLSTSADMQRWSTIDSGAISRYISGLEGDDGLPISYAGNYSIEEQNRAWFLQGNFSGERYRGNIGVR YVHSRDSTDGFSYAPGGGYTPVNFLSSYGKWLPSFNIAYDLRDDLMLRFAASKVIARPRYTNMTPYVATDDTTLTASTGN PGLSPYESTNLGASLEWYFSDSSLLSGEFFSRDISNYILTTVQDRVFFNNATGGSSTYQTSVPTNAGDARVRGVALNLQH NFGNGFGVVANYTYSDSKTDGDYSLPYNSRNAYNVSPYYEQGKWSARVNLGWRSEYFTQIGRLNGQQMTDAFTQVDASFG YQATERLRVALEATNLLDETYFSYIGNKNQPYYIYKNGRSFMLSLNFKL
Sequences:
>Translated_849_residues MACVASLPAFAQEQPAPAQQQTPPQTDPSVSTLDEIKVVGYQASLGKALNVKRNADAIVDAISAEDIGKFPDTNVAESLS RLSGITVDRQFGEGEKVSILGTDPALNRVLLNGQTIASTSWGGDPNDPDSRSFNYSTLAPEVVGLMEVYKTPEARIDEGS IGGTVIVHTRKPLDLDRNTLTGTVSYGYNDRSDEGKPNASALYSWKNQDQTLGVLTSVMHSQRVLRRDGVEIFGYDNVQG AGFPPGVVGNNTGVFPTSINTALFQQTRKRDGVSAALQWKPDSDFELNLTGLYVKESFDNYNQSRYGYWGSTPGDAQALG FENGIATSGTFGDQSNTYLDGYLRNSQVSTGSIHLRTDWHGDGWNASSQVGYTSSQGGAERIYGIQFRNLAGYSYTIDGR RTAMDYSTDPTNAAAMQLNNASASHSPQYDKERYLQLDFDHAVEWGPFTQILTGIKLTNHAAGQSSYSRTWTPNDGSTLA AFSPGTTPSGYLDGLSTSADMQRWSTIDSGAISRYISGLEGDDGLPISYAGNYSIEEQNRAWFLQGNFSGERYRGNIGVR YVHSRDSTDGFSYAPGGGYTPVNFLSSYGKWLPSFNIAYDLRDDLMLRFAASKVIARPRYTNMTPYVATDDTTLTASTGN PGLSPYESTNLGASLEWYFSDSSLLSGEFFSRDISNYILTTVQDRVFFNNATGGSSTYQTSVPTNAGDARVRGVALNLQH NFGNGFGVVANYTYSDSKTDGDYSLPYNSRNAYNVSPYYEQGKWSARVNLGWRSEYFTQIGRLNGQQMTDAFTQVDASFG YQATERLRVALEATNLLDETYFSYIGNKNQPYYIYKNGRSFMLSLNFKL >Mature_848_residues ACVASLPAFAQEQPAPAQQQTPPQTDPSVSTLDEIKVVGYQASLGKALNVKRNADAIVDAISAEDIGKFPDTNVAESLSR LSGITVDRQFGEGEKVSILGTDPALNRVLLNGQTIASTSWGGDPNDPDSRSFNYSTLAPEVVGLMEVYKTPEARIDEGSI GGTVIVHTRKPLDLDRNTLTGTVSYGYNDRSDEGKPNASALYSWKNQDQTLGVLTSVMHSQRVLRRDGVEIFGYDNVQGA GFPPGVVGNNTGVFPTSINTALFQQTRKRDGVSAALQWKPDSDFELNLTGLYVKESFDNYNQSRYGYWGSTPGDAQALGF ENGIATSGTFGDQSNTYLDGYLRNSQVSTGSIHLRTDWHGDGWNASSQVGYTSSQGGAERIYGIQFRNLAGYSYTIDGRR TAMDYSTDPTNAAAMQLNNASASHSPQYDKERYLQLDFDHAVEWGPFTQILTGIKLTNHAAGQSSYSRTWTPNDGSTLAA FSPGTTPSGYLDGLSTSADMQRWSTIDSGAISRYISGLEGDDGLPISYAGNYSIEEQNRAWFLQGNFSGERYRGNIGVRY VHSRDSTDGFSYAPGGGYTPVNFLSSYGKWLPSFNIAYDLRDDLMLRFAASKVIARPRYTNMTPYVATDDTTLTASTGNP GLSPYESTNLGASLEWYFSDSSLLSGEFFSRDISNYILTTVQDRVFFNNATGGSSTYQTSVPTNAGDARVRGVALNLQHN FGNGFGVVANYTYSDSKTDGDYSLPYNSRNAYNVSPYYEQGKWSARVNLGWRSEYFTQIGRLNGQQMTDAFTQVDASFGY QATERLRVALEATNLLDETYFSYIGNKNQPYYIYKNGRSFMLSLNFKL
Specific function: Probable Receptor, Tonb-Dependent, That Participates In Iron Transport. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93040; Mature: 92908
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACVASLPAFAQEQPAPAQQQTPPQTDPSVSTLDEIKVVGYQASLGKALNVKRNADAIVD CCCHHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEHHCCCCCCCCCCCHHHHH AISAEDIGKFPDTNVAESLSRLSGITVDRQFGEGEKVSILGTDPALNRVLLNGQTIASTS HHCHHHCCCCCCCHHHHHHHHHHCCEEECCCCCCCEEEEEECCHHHCEEEECCCEEEECC WGGDPNDPDSRSFNYSTLAPEVVGLMEVYKTPEARIDEGSIGGTVIVHTRKPLDLDRNTL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE TGTVSYGYNDRSDEGKPNASALYSWKNQDQTLGVLTSVMHSQRVLRRDGVEIFGYDNVQG EEEEEECCCCCCCCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC AGFPPGVVGNNTGVFPTSINTALFQQTRKRDGVSAALQWKPDSDFELNLTGLYVKESFDN CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCC YNQSRYGYWGSTPGDAQALGFENGIATSGTFGDQSNTYLDGYLRNSQVSTGSIHLRTDWH CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECC GDGWNASSQVGYTSSQGGAERIYGIQFRNLAGYSYTIDGRRTAMDYSTDPTNAAAMQLNN CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCEEEECCCCCCCCCEEEEECC ASASHSPQYDKERYLQLDFDHAVEWGPFTQILTGIKLTNHAAGQSSYSRTWTPNDGSTLA CCCCCCCCCCCCCEEEEEHHHCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCCCCCCEEE AFSPGTTPSGYLDGLSTSADMQRWSTIDSGAISRYISGLEGDDGLPISYAGNYSIEEQNR EECCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEECCCCCEECCCC AWFLQGNFSGERYRGNIGVRYVHSRDSTDGFSYAPGGGYTPVNFLSSYGKWLPSFNIAYD EEEEEECCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE LRDDLMLRFAASKVIARPRYTNMTPYVATDDTTLTASTGNPGLSPYESTNLGASLEWYFS CCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEC DSSLLSGEFFSRDISNYILTTVQDRVFFNNATGGSSTYQTSVPTNAGDARVRGVALNLQH CCCEECCHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEEEEEE NFGNGFGVVANYTYSDSKTDGDYSLPYNSRNAYNVSPYYEQGKWSARVNLGWRSEYFTQI CCCCCEEEEEEEEECCCCCCCCEECCCCCCCCEECCCCHHCCCEEEEEECCCCHHHHHHH GRLNGQQMTDAFTQVDASFGYQATERLRVALEATNLLDETYFSYIGNKNQPYYIYKNGRS HCCCCHHHHHHHHHHHHHCCCCHHHHEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCE FMLSLNFKL EEEEEEECC >Mature Secondary Structure ACVASLPAFAQEQPAPAQQQTPPQTDPSVSTLDEIKVVGYQASLGKALNVKRNADAIVD CCHHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEHHCCCCCCCCCCCHHHHH AISAEDIGKFPDTNVAESLSRLSGITVDRQFGEGEKVSILGTDPALNRVLLNGQTIASTS HHCHHHCCCCCCCHHHHHHHHHHCCEEECCCCCCCEEEEEECCHHHCEEEECCCEEEECC WGGDPNDPDSRSFNYSTLAPEVVGLMEVYKTPEARIDEGSIGGTVIVHTRKPLDLDRNTL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE TGTVSYGYNDRSDEGKPNASALYSWKNQDQTLGVLTSVMHSQRVLRRDGVEIFGYDNVQG EEEEEECCCCCCCCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC AGFPPGVVGNNTGVFPTSINTALFQQTRKRDGVSAALQWKPDSDFELNLTGLYVKESFDN CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCC YNQSRYGYWGSTPGDAQALGFENGIATSGTFGDQSNTYLDGYLRNSQVSTGSIHLRTDWH CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECC GDGWNASSQVGYTSSQGGAERIYGIQFRNLAGYSYTIDGRRTAMDYSTDPTNAAAMQLNN CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCEEEECCCCCCCCCEEEEECC ASASHSPQYDKERYLQLDFDHAVEWGPFTQILTGIKLTNHAAGQSSYSRTWTPNDGSTLA CCCCCCCCCCCCCEEEEEHHHCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCCCCCCEEE AFSPGTTPSGYLDGLSTSADMQRWSTIDSGAISRYISGLEGDDGLPISYAGNYSIEEQNR EECCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEECCCCCEECCCC AWFLQGNFSGERYRGNIGVRYVHSRDSTDGFSYAPGGGYTPVNFLSSYGKWLPSFNIAYD EEEEEECCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE LRDDLMLRFAASKVIARPRYTNMTPYVATDDTTLTASTGNPGLSPYESTNLGASLEWYFS CCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEC DSSLLSGEFFSRDISNYILTTVQDRVFFNNATGGSSTYQTSVPTNAGDARVRGVALNLQH CCCEECCHHHHHHHHHHHHHEEEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEEEEEE NFGNGFGVVANYTYSDSKTDGDYSLPYNSRNAYNVSPYYEQGKWSARVNLGWRSEYFTQI CCCCCEEEEEEEEECCCCCCCCEECCCCCCCCEECCCCHHCCCEEEEEECCCCHHHHHHH GRLNGQQMTDAFTQVDASFGYQATERLRVALEATNLLDETYFSYIGNKNQPYYIYKNGRS HCCCCHHHHHHHHHHHHHCCCCHHHHEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCE FMLSLNFKL EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA