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The map label for this gene is xcsD [H]

Identifier: 21241466

GI number: 21241466

Start: 824637

End: 826715

Strand: Direct

Name: xcsD [H]

Synonym: XAC0695

Alternate gene names: 21241466

Gene position: 824637-826715 (Clockwise)

Preceding gene: 21241465

Following gene: 21241467

Centisome position: 15.93

GC content: 66.71

Gene sequence:

>2079_bases
ATGACCGTTGTCCGCCCGCTCTGGCTGATCTCGGCCACGTTGTTGCTCGCATTGCCCGCGGTGCCGATGACCGCACTGCA
TGCCGCCGATGCGCCGGCAGTGCGCCTGCAGGACGTGGACCTGCGCGCCTTCATCCAGGACGTCTCGCGTGCCACCGGCA
TCACCTTCATCGTGGACACGCGCGTGCAGGGCTCGGTCAACGTGGCGCGTGCGCAGGCGATGTCCGAAGCCGATCTGCTG
GGCATGCTGCTGGCCGTGCTACGCGCCAATGGATTGATTGCGGTGTCCAGCGGGCCATCGACCTACCGCGTCATTCCCGA
CGACACCGCCGCGCAGCAGCCGGGCAGCGCCGCCAACGGCAACCTGGGGTTCGCCACGCAGGTCTTCACCCTGCAGCGCG
TGGACGCACGCAGCGCCGCCGAGATCCTCAAGCCGTTGATCGGGCGCGGTGGCGTGATCATGGCGATGCCGCAAGGCAAT
AGCCTGTTGATCGCCGACTACGCCGATAACCTGCGACGCATCCGCACGTTGGTGGCGCAGATCGATACCGACCGTGCGGC
CATCGATACGGTGACGTTGCGCAATAGCTCGGCGCAGGAACTGGCGCGCACCTTGACCTCGCTGTTCGGGCAAGGCGGCG
AGCGCAGCAATGTGTTGTCGGTGTTGCCGGTGGACAGCAGCAACTCCTTGATCGTGCGTGGCGACCCCGCACTGGTGCAG
CGCGTGGTACGTACCGCAGTCGATCTGGACGGGCGCGCCGAGCGCCGTGGCGACGTCAGCGTGGTGCGCTTGCAACACGC
CAGTGCCGAGCAACTATTGCCGGTGTTGCAGCAATTGGTCGGCCAGACTCCAGGCAATGAGGCGCAGGTCGGGCAGGACA
CACGTTTGGCTACGATCGATGTGGCCGCCGCGAGCGGCGCTGCGCAGACGCAGGTGATCGCGCCGGCGGCAGGCAAGCGC
CCGGTGATCGTGCGTTACCCAGGCTCCAACGCGTTGATCATCAACGCCGACCCGGAGACCCAGCGCGCCTTGATGGATGT
GATCCGGCAGCTGGATGTGCATCGCGAGCAGGTATTGGTCGAAGCGATCGTGGTGGAGATTTCCGACACCGCCGCCAAGC
GCCTGGGCGTGCAGCTGCTGCTGGCCGGCCGCAACGGCACGGTGCCGTTGGTCGCCACGCAATACAGCGGCGCATCGCCA
GGCATCGTGCCGCTGGCCGCGGCGGCGGCTGGCACGCGCAGCGGCAATGCCGACGACGATTCGGTGCTGGAACAGGCGCG
CAACGTGGCTGCGCAATCGCTGCTCGGTTTGAGCGGCGGCTTGATCGGCCTGGCCGGGCAAAGCAACGATGCGGTGTTCG
GCATGATCATCGATGCGGTCAAGAGCGACACCGGCTCAAACCTGTTGTCCACGCCCTCGATCATGACCCTGGATAACGAG
CAGGCGCGCATCCTGGTAGGCCAGGAAGTGCCGATCACCACTGGCGAAGTGCTCGGCGCGGCCAACGACAACCCATTCCG
CACCATCCAGCGCCAGGACGTGGGCGTGGAGCTGGAAGTGCGCCCGCAGATCAATACCGCCGGCGGCATCACGCTGGCGA
TCAAGCAGGAGGTCTCGGCGATTGCCGGGCCGGTCAGCGCGCAATCGTCGGAGCTGGTGTTCAACAAGCGCCAGATCGAA
ACGCGCGTGGTGGTGGAGAACGGTGCCATCGTGGCGCTTGGCGGCCTGCTCGATCAGAACGACCGCCAGACCGTGGAGAA
GGTGCCGCTGCTTGGCGATGTACCCGGCCTGGGCGCGTTGTTCCGGCACAAGTCGCGCAACCGCGACAAGACCAACCTGA
TGGTGTTCATTCGCCCCACCATCATTCGCGATGCAGCCGATGCCCAGCGCATGACCGCGCCGCGCTACACCTATCTGCGC
GAGCGTCAGCTGGCCGATGGCGACCCGGAAGCGGCGCTGGATGCGTTGGTGCGCGACTACTTGCGTGCTCAGCCGCCGCA
GTTGCCGGCACGTCCCTCGTCAGTTGCGCCGGCACCGGCAACGACACCTGCGCCCGGCGCACGTCCCGTGCAGCGGTGA

Upstream 100 bases:

>100_bases
ATCTGCGCGAACTGCAGGACGAATTGCGCGATGGCCAGAGCGCCACGCTGACCTACCGCCGCGACGGCCAGACCCACACC
ATGACCTTGAAGCGCCCGCA

Downstream 100 bases:

>100_bases
CGCCATGAGCACTGCGCGCGCCGGCATTTCCTATGCATTCGCCAAGCGTCACGGCGTGGTGCTGCTTGGCAGCGACACCA
CAGCGCAGATCGGGTTGCGC

Product: type II secretion system protein D

Products: NA

Alternate protein names: Pullulanase secretion envelope pulD [H]

Number of amino acids: Translated: 692; Mature: 691

Protein sequence:

>692_residues
MTVVRPLWLISATLLLALPAVPMTALHAADAPAVRLQDVDLRAFIQDVSRATGITFIVDTRVQGSVNVARAQAMSEADLL
GMLLAVLRANGLIAVSSGPSTYRVIPDDTAAQQPGSAANGNLGFATQVFTLQRVDARSAAEILKPLIGRGGVIMAMPQGN
SLLIADYADNLRRIRTLVAQIDTDRAAIDTVTLRNSSAQELARTLTSLFGQGGERSNVLSVLPVDSSNSLIVRGDPALVQ
RVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQDTRLATIDVAAASGAAQTQVIAPAAGKR
PVIVRYPGSNALIINADPETQRALMDVIRQLDVHREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASP
GIVPLAAAAAGTRSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNE
QARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIE
TRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYTYLR
ERQLADGDPEAALDALVRDYLRAQPPQLPARPSSVAPAPATTPAPGARPVQR

Sequences:

>Translated_692_residues
MTVVRPLWLISATLLLALPAVPMTALHAADAPAVRLQDVDLRAFIQDVSRATGITFIVDTRVQGSVNVARAQAMSEADLL
GMLLAVLRANGLIAVSSGPSTYRVIPDDTAAQQPGSAANGNLGFATQVFTLQRVDARSAAEILKPLIGRGGVIMAMPQGN
SLLIADYADNLRRIRTLVAQIDTDRAAIDTVTLRNSSAQELARTLTSLFGQGGERSNVLSVLPVDSSNSLIVRGDPALVQ
RVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQDTRLATIDVAAASGAAQTQVIAPAAGKR
PVIVRYPGSNALIINADPETQRALMDVIRQLDVHREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASP
GIVPLAAAAAGTRSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNE
QARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIE
TRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYTYLR
ERQLADGDPEAALDALVRDYLRAQPPQLPARPSSVAPAPATTPAPGARPVQR
>Mature_691_residues
TVVRPLWLISATLLLALPAVPMTALHAADAPAVRLQDVDLRAFIQDVSRATGITFIVDTRVQGSVNVARAQAMSEADLLG
MLLAVLRANGLIAVSSGPSTYRVIPDDTAAQQPGSAANGNLGFATQVFTLQRVDARSAAEILKPLIGRGGVIMAMPQGNS
LLIADYADNLRRIRTLVAQIDTDRAAIDTVTLRNSSAQELARTLTSLFGQGGERSNVLSVLPVDSSNSLIVRGDPALVQR
VVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQDTRLATIDVAAASGAAQTQVIAPAAGKRP
VIVRYPGSNALIINADPETQRALMDVIRQLDVHREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASPG
IVPLAAAAAGTRSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQ
ARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSELVFNKRQIET
RVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYTYLRE
RQLADGDPEAALDALVRDYLRAQPPQLPARPSSVAPAPATTPAPGARPVQR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of pullulanase [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=659, Percent_Identity=29.742033383915, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI1789793, Length=299, Percent_Identity=26.0869565217391, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 72939; Mature: 72808

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVVRPLWLISATLLLALPAVPMTALHAADAPAVRLQDVDLRAFIQDVSRATGITFIVDT
CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCEEEEEEC
RVQGSVNVARAQAMSEADLLGMLLAVLRANGLIAVSSGPSTYRVIPDDTAAQQPGSAANG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCCCC
NLGFATQVFTLQRVDARSAAEILKPLIGRGGVIMAMPQGNSLLIADYADNLRRIRTLVAQ
CCCEEEEEEEEHHHCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHH
IDTDRAAIDTVTLRNSSAQELARTLTSLFGQGGERSNVLSVLPVDSSNSLIVRGDPALVQ
HCCCCHHEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEECCHHHHH
RVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQDTRLATID
HHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
VAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVHREQVLV
EEECCCCCCEEEECCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
EAIVVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASPGIVPLAAAAAGTRSGNADDD
HHHHEEHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCHH
SVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNE
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCC
QARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSA
CEEEEECCCCCCCCHHHEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCEEEEEEHHHHH
IAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGAL
HHCCCCCCCCHHEEEHHHCEEEEEEECCCEEEECCCCCCCCHHHHHHCCCCCCCCCCHHH
FRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYTYLRERQLADGDPEAALDALVRDY
HHHCCCCCCCCEEEEEEECHHHHCCHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
LRAQPPQLPARPSSVAPAPATTPAPGARPVQR
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TVVRPLWLISATLLLALPAVPMTALHAADAPAVRLQDVDLRAFIQDVSRATGITFIVDT
CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCEEEEEEC
RVQGSVNVARAQAMSEADLLGMLLAVLRANGLIAVSSGPSTYRVIPDDTAAQQPGSAANG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCCCC
NLGFATQVFTLQRVDARSAAEILKPLIGRGGVIMAMPQGNSLLIADYADNLRRIRTLVAQ
CCCEEEEEEEEHHHCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHH
IDTDRAAIDTVTLRNSSAQELARTLTSLFGQGGERSNVLSVLPVDSSNSLIVRGDPALVQ
HCCCCHHEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEECCHHHHH
RVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQDTRLATID
HHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
VAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDVHREQVLV
EEECCCCCCEEEECCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
EAIVVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASPGIVPLAAAAAGTRSGNADDD
HHHHEEHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCHH
SVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNE
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCC
QARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSA
CEEEEECCCCCCCCHHHEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCEEEEEEHHHHH
IAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGAL
HHCCCCCCCCHHEEEHHHCEEEEEEECCCEEEECCCCCCCCHHHHHHCCCCCCCCCCHHH
FRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYTYLRERQLADGDPEAALDALVRDY
HHHCCCCCCCCEEEEEEECHHHHCCHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
LRAQPPQLPARPSSVAPAPATTPAPGARPVQR
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2677007 [H]