Click here to switch to the map view.

The map label for this gene is phaC [H]

Identifier: 21241234

GI number: 21241234

Start: 549410

End: 549784

Strand: Reverse

Name: phaC [H]

Synonym: XAC0461

Alternate gene names: 21241234

Gene position: 549784-549410 (Counterclockwise)

Preceding gene: 21241235

Following gene: 21241233

Centisome position: 10.62

GC content: 66.93

Gene sequence:

>375_bases
ATGGAATTGGCAGTGGCAAGCGCGATCGGCGTCCTCACCGCATTGGCGATCTATCTGCTGCTGCGCGCGCGCAGCTTCGA
TGTGATCCTGGGCATGACCTTCCTGTCGTACGCCACCAACCTGCTGATCTTTGCCGGTGGGCGCTTGCGCAGCGGCCAGG
CGCCGGTGTTGCGCGACGGCGTGCCGGCCGAGCTGATGCATCACAGCGACCCGCTCCCGCAGGCCTTGGTGCTGACCGCC
ATCGTGATTGCGTTTGCGATGACGGCCGTGAGCCTGGTGCTGGCGATCCGCAGCCGTAGCGACAACGGCAGCGACCACGT
GGATGCGCACGAAGATGCCGCGACCGGCACGGATCCGCGGCAGGCCCGGCGATGA

Upstream 100 bases:

>100_bases
TGTCGATGATGGGCACGATCAAACCCTCGCGTACGCGCAGTTCCCAGCGCGGCGAGATCGACCCCACCCAACGTTCGACA
CGTACCGCGGAGCAGCATTG

Downstream 100 bases:

>100_bases
ACCATCTGCTGATCCTGCCCATCCTGATCCCGATGCTGGGCGCGTCGGCGTCGTTATTTGTCGAACACCGCCGCTATGGG
CCACGCGTGCAGCGCAGCGT

Product: monovalent cation/H+ antiporter subunit C

Products: NA

Alternate protein names: pH adaptation potassium efflux system protein C; Pha system subunit C [H]

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MELAVASAIGVLTALAIYLLLRARSFDVILGMTFLSYATNLLIFAGGRLRSGQAPVLRDGVPAELMHHSDPLPQALVLTA
IVIAFAMTAVSLVLAIRSRSDNGSDHVDAHEDAATGTDPRQARR

Sequences:

>Translated_124_residues
MELAVASAIGVLTALAIYLLLRARSFDVILGMTFLSYATNLLIFAGGRLRSGQAPVLRDGVPAELMHHSDPLPQALVLTA
IVIAFAMTAVSLVLAIRSRSDNGSDHVDAHEDAATGTDPRQARR
>Mature_124_residues
MELAVASAIGVLTALAIYLLLRARSFDVILGMTFLSYATNLLIFAGGRLRSGQAPVLRDGVPAELMHHSDPLPQALVLTA
IVIAFAMTAVSLVLAIRSRSDNGSDHVDAHEDAATGTDPRQARR

Specific function: Part of a K(+) efflux system which is required for the adaptation of R.meliloti to alkaline pH as well as for the infection process during symbiotic nodule development [H]

COG id: COG1006

COG function: function code P; Multisubunit Na+/H+ antiporter, MnhC subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CPA3 antiporters (TC 2.A.63) subunit C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006673
- InterPro:   IPR001133 [H]

Pfam domain/function: PF00420 Oxidored_q2 [H]

EC number: NA

Molecular weight: Translated: 13164; Mature: 13164

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELAVASAIGVLTALAIYLLLRARSFDVILGMTFLSYATNLLIFAGGRLRSGQAPVLRDG
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
VPAELMHHSDPLPQALVLTAIVIAFAMTAVSLVLAIRSRSDNGSDHVDAHEDAATGTDPR
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
QARR
HCCC
>Mature Secondary Structure
MELAVASAIGVLTALAIYLLLRARSFDVILGMTFLSYATNLLIFAGGRLRSGQAPVLRDG
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
VPAELMHHSDPLPQALVLTAIVIAFAMTAVSLVLAIRSRSDNGSDHVDAHEDAATGTDPR
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
QARR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680201; 11481430 [H]