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The map label for this gene is hrpF [H]

Identifier: 21241167

GI number: 21241167

Start: 465213

End: 467687

Strand: Reverse

Name: hrpF [H]

Synonym: XAC0394

Alternate gene names: 21241167

Gene position: 467687-465213 (Counterclockwise)

Preceding gene: 21241168

Following gene: 77748523

Centisome position: 9.04

GC content: 58.42

Gene sequence:

>2475_bases
ATGGGCGCACCCGTGCGGCCGTATAAGAGAAAGCTTATACGCAGGTGCTTCTGCCAATTCTGCCATTGCGAGGCCGCCCA
TATGTCGCTCAATACACTTTCTACCGGGAGCAACCCCAGCCAATTGCTGGGCACTCCTCTAAACGAGTCCGATTCGTCGG
AGCTGTTGGGGTCGGATTCGTCCAAGGATGACTCCGATCTGCCGTCGACGATGGACGACATCTTTCTGCTGATCTACCAG
CTGCTGGCAGCCCTCCAAACCAACGCGCCAACGAGTACATCAGGCAATGGGTCGGCCGATGCACCAACAAGCGCGCCAAG
CGGCGATGCCAGCACCCCGTCTTCTGCATCGGACGATCAAGCCAACCAGCCGATCGAGAAGCGCACCTCGTGGCCATCGC
TGGGCTACGACTTCGATCCCAAGGACATCAAGGGTAAGGACGCGCCACCAGCATTGGAGGGCTCAACGGTCACCTGGAAC
GGTGGCACGCTCACACCATCGGAGCTGCAGATCGTTTCGACCTTGAATGCCCACAAGGATCAGATGCCGCTCGAATACAA
GAATCTCGATGACAAGATCAACGACCCTTCCACGCCCGCCGACCTGAAGGCCGCATTGCAGGGACTGAAGCAGGACCCGC
GCTTGTTCTTTGCGATCGGTTCGCAGGGAGACGGCAAGTGCGGCGGCAAGATCAAGGCGCAGGATCTCTGGGATTTCTCC
GATTCGCATCCGCAGGTCAAGGCGATGGGCGGGAAGAACGACCAGTTCAACCCCAAGGACATCAAGGGATCGACGCCACC
TCCCGCCGTCGATGGCTCATCGGTCACCTGGGATGGTGGAACGCTCACCCAGAATGAGCTGGAAATCGTCAGTACGCTCA
ATCGCCATAAGGATCAGTGCCCACTCAAGTGGTCCGATCTGGATGCAAAGATCAACGACCCGTCGACACCACCGGATCTG
AAGAAGGCATTGACGGACTTGCAGTCGGACCCGCGGCTGTTCTTCGCGATCGGCTCGCAAGGTGATGGCAAGTGCGGCGG
CAAGATCAAAGACGGCGATCTCGGCAAGTTCGTCTCCCACCATGCGCAGGTCGCCGAGTACGCCGACAAGCAAGCAAAGA
ACTACACACAGAACTACGTGGCCTCGGACAGCCCGGACAAGACCAAGGCGTCGGTAATGAACGAGAGCGATGCCATGCGT
GAGCTGTACCGCTATTCGGACTATCTGCCGGACGATCTGAATCAGGATACCTTCAAGTCTCTGGTGGATGGCGAAAGCAG
CACCAAGAAATGTCCGCCGCAGGTCATCGCTGCCGCACAGTATTTTCGTGATCATCCCGACCAGTGGAAAGCGCTGGCAG
GAGACTCCGGCTCGATGAGCAAACCGGACTTCCTGCAGAAAGCCAGCTCCGAGATTCACCTGACGGCGGACGAGCAGAAG
ACGCTGGACACCATCAACAGTCATCAAGACGCTTTTTACGGCGATGGCAAGGAAGTGACCCGCGACAAGCTCGACTCCAT
TTCCAAGGACGACAAGGCCGACCCCGCGGTGAAAGAGGCCGCGACGCAGTTGTTGAACGATCCGTTGCTGTTCGGGTTGT
TGAACAACTCGATCACCGGCTACAAGAAGCCACATCGCTTCTTCGGGGGTGGTCATGTCGTCGACTCGGGCAAGATCAGC
CAGGACGATTTCCGGCGGTTCTACGACAACATGAGCGCAGCCAACAAGACCGTGGACAAGCCGGTCACGCACGATGCCAG
CTCGGCCGAGCAGCAAAAGGCCGTCTCGGACATGCTGATGGGCAAGGACGATCCGCCCGCGATCAAGAAGCCCAAAAAAG
ACGTCGGCGTGTTCCAGGAGGGCTTGCACGAGTTCCTCAAGTGGGACAGCAAGATCCTGGACTGGATGTCCGTTGGCCTC
AGCGCATTGAATGGGATTCCCATCATCGGCGAAATTACCGATGCGGCGTCGATTGCATTGGAAAGCGAGGCGCAGGCGGC
GCAGGTGGTCGACACCGCGATTCAAGGTGGCGACATGTCGCTTGCCTTGAAGCTGGCCGGCATCAATATGGCCGGAGCAG
TGGTTGGAGCAGTCGGCGGACCCACGGCCAGAATCGGAGCCAAGGCGGTCGCCAAGGGAGTCGCCGAAGCCGCGGCCAAG
GGAACTGCCAAGGGCGTGGCCAAAGGTGCGGGTAGAACGGCGGCCGAACGGCCGAGCGCCGCGGAGTTCGCAAAAGGCTA
TGTCGGCGGCACTGCCATCAGTAAATCGGTTGAAATTCTCAAGACGCCCGTCTTGGCGGGCTTGCATTACGAAGAATATC
GACTGGACAAGCAGAAAGAAGGAGAGATCCACCAGAAGATGGAAAACGCCGGCGGCATCCCGATGGGTAAGCAGATTGTT
CCCACGAACGTTGCCAACAATTTCGAGGGAGACCTGCGACAGAACCTGAGGAATATCAGAGTGCGTCGTAGATAA

Upstream 100 bases:

>100_bases
GAATAGGGCATCGACGCACCGATTTTTGCGCTTTTTTCGCCAAAATAGTTCGTCGACCAAGGTGCCCATCGCGCAGATTG
GCAACATACGGCTACACCGC

Downstream 100 bases:

>100_bases
CGCGCATGCCACAGCGACATTTGCGTTAGACGTCCTGCAGCCGGCGTTGGTGATCGTGAACGTGGGCGTTGCGGCAACGC
CGGTCGATCTGCCACGACGT

Product: HrpF protein

Products: NA

Alternate protein names: Nodulation protein nolX [H]

Number of amino acids: Translated: 824; Mature: 823

Protein sequence:

>824_residues
MGAPVRPYKRKLIRRCFCQFCHCEAAHMSLNTLSTGSNPSQLLGTPLNESDSSELLGSDSSKDDSDLPSTMDDIFLLIYQ
LLAALQTNAPTSTSGNGSADAPTSAPSGDASTPSSASDDQANQPIEKRTSWPSLGYDFDPKDIKGKDAPPALEGSTVTWN
GGTLTPSELQIVSTLNAHKDQMPLEYKNLDDKINDPSTPADLKAALQGLKQDPRLFFAIGSQGDGKCGGKIKAQDLWDFS
DSHPQVKAMGGKNDQFNPKDIKGSTPPPAVDGSSVTWDGGTLTQNELEIVSTLNRHKDQCPLKWSDLDAKINDPSTPPDL
KKALTDLQSDPRLFFAIGSQGDGKCGGKIKDGDLGKFVSHHAQVAEYADKQAKNYTQNYVASDSPDKTKASVMNESDAMR
ELYRYSDYLPDDLNQDTFKSLVDGESSTKKCPPQVIAAAQYFRDHPDQWKALAGDSGSMSKPDFLQKASSEIHLTADEQK
TLDTINSHQDAFYGDGKEVTRDKLDSISKDDKADPAVKEAATQLLNDPLLFGLLNNSITGYKKPHRFFGGGHVVDSGKIS
QDDFRRFYDNMSAANKTVDKPVTHDASSAEQQKAVSDMLMGKDDPPAIKKPKKDVGVFQEGLHEFLKWDSKILDWMSVGL
SALNGIPIIGEITDAASIALESEAQAAQVVDTAIQGGDMSLALKLAGINMAGAVVGAVGGPTARIGAKAVAKGVAEAAAK
GTAKGVAKGAGRTAAERPSAAEFAKGYVGGTAISKSVEILKTPVLAGLHYEEYRLDKQKEGEIHQKMENAGGIPMGKQIV
PTNVANNFEGDLRQNLRNIRVRRR

Sequences:

>Translated_824_residues
MGAPVRPYKRKLIRRCFCQFCHCEAAHMSLNTLSTGSNPSQLLGTPLNESDSSELLGSDSSKDDSDLPSTMDDIFLLIYQ
LLAALQTNAPTSTSGNGSADAPTSAPSGDASTPSSASDDQANQPIEKRTSWPSLGYDFDPKDIKGKDAPPALEGSTVTWN
GGTLTPSELQIVSTLNAHKDQMPLEYKNLDDKINDPSTPADLKAALQGLKQDPRLFFAIGSQGDGKCGGKIKAQDLWDFS
DSHPQVKAMGGKNDQFNPKDIKGSTPPPAVDGSSVTWDGGTLTQNELEIVSTLNRHKDQCPLKWSDLDAKINDPSTPPDL
KKALTDLQSDPRLFFAIGSQGDGKCGGKIKDGDLGKFVSHHAQVAEYADKQAKNYTQNYVASDSPDKTKASVMNESDAMR
ELYRYSDYLPDDLNQDTFKSLVDGESSTKKCPPQVIAAAQYFRDHPDQWKALAGDSGSMSKPDFLQKASSEIHLTADEQK
TLDTINSHQDAFYGDGKEVTRDKLDSISKDDKADPAVKEAATQLLNDPLLFGLLNNSITGYKKPHRFFGGGHVVDSGKIS
QDDFRRFYDNMSAANKTVDKPVTHDASSAEQQKAVSDMLMGKDDPPAIKKPKKDVGVFQEGLHEFLKWDSKILDWMSVGL
SALNGIPIIGEITDAASIALESEAQAAQVVDTAIQGGDMSLALKLAGINMAGAVVGAVGGPTARIGAKAVAKGVAEAAAK
GTAKGVAKGAGRTAAERPSAAEFAKGYVGGTAISKSVEILKTPVLAGLHYEEYRLDKQKEGEIHQKMENAGGIPMGKQIV
PTNVANNFEGDLRQNLRNIRVRRR
>Mature_823_residues
GAPVRPYKRKLIRRCFCQFCHCEAAHMSLNTLSTGSNPSQLLGTPLNESDSSELLGSDSSKDDSDLPSTMDDIFLLIYQL
LAALQTNAPTSTSGNGSADAPTSAPSGDASTPSSASDDQANQPIEKRTSWPSLGYDFDPKDIKGKDAPPALEGSTVTWNG
GTLTPSELQIVSTLNAHKDQMPLEYKNLDDKINDPSTPADLKAALQGLKQDPRLFFAIGSQGDGKCGGKIKAQDLWDFSD
SHPQVKAMGGKNDQFNPKDIKGSTPPPAVDGSSVTWDGGTLTQNELEIVSTLNRHKDQCPLKWSDLDAKINDPSTPPDLK
KALTDLQSDPRLFFAIGSQGDGKCGGKIKDGDLGKFVSHHAQVAEYADKQAKNYTQNYVASDSPDKTKASVMNESDAMRE
LYRYSDYLPDDLNQDTFKSLVDGESSTKKCPPQVIAAAQYFRDHPDQWKALAGDSGSMSKPDFLQKASSEIHLTADEQKT
LDTINSHQDAFYGDGKEVTRDKLDSISKDDKADPAVKEAATQLLNDPLLFGLLNNSITGYKKPHRFFGGGHVVDSGKISQ
DDFRRFYDNMSAANKTVDKPVTHDASSAEQQKAVSDMLMGKDDPPAIKKPKKDVGVFQEGLHEFLKWDSKILDWMSVGLS
ALNGIPIIGEITDAASIALESEAQAAQVVDTAIQGGDMSLALKLAGINMAGAVVGAVGGPTARIGAKAVAKGVAEAAAKG
TAKGVAKGAGRTAAERPSAAEFAKGYVGGTAISKSVEILKTPVLAGLHYEEYRLDKQKEGEIHQKMENAGGIPMGKQIVP
TNVANNFEGDLRQNLRNIRVRRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted. Note=Secreted by the type II secretion system and delivered into the host plant cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008718 [H]

Pfam domain/function: PF05819 NolX [H]

EC number: NA

Molecular weight: Translated: 88461; Mature: 88330

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAPVRPYKRKLIRRCFCQFCHCEAAHMSLNTLSTGSNPSQLLGTPLNESDSSELLGSDS
CCCCCCHHHHHHHHHHHHHHHCCHHHHHEHHHCCCCCCHHHHHCCCCCCCCCHHHHCCCC
SKDDSDLPSTMDDIFLLIYQLLAALQTNAPTSTSGNGSADAPTSAPSGDASTPSSASDDQ
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
ANQPIEKRTSWPSLGYDFDPKDIKGKDAPPALEGSTVTWNGGTLTPSELQIVSTLNAHKD
HCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
QMPLEYKNLDDKINDPSTPADLKAALQGLKQDPRLFFAIGSQGDGKCGGKIKAQDLWDFS
CCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEHHHCCCCC
DSHPQVKAMGGKNDQFNPKDIKGSTPPPAVDGSSVTWDGGTLTQNELEIVSTLNRHKDQC
CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
PLKWSDLDAKINDPSTPPDLKKALTDLQSDPRLFFAIGSQGDGKCGGKIKDGDLGKFVSH
CCEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH
HAQVAEYADKQAKNYTQNYVASDSPDKTKASVMNESDAMRELYRYSDYLPDDLNQDTFKS
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHH
LVDGESSTKKCPPQVIAAAQYFRDHPDQWKALAGDSGSMSKPDFLQKASSEIHLTADEQK
HHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHCCCCEEEECCHHH
TLDTINSHQDAFYGDGKEVTRDKLDSISKDDKADPAVKEAATQLLNDPLLFGLLNNSITG
HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEHHHHCCCCC
YKKPHRFFGGGHVVDSGKISQDDFRRFYDNMSAANKTVDKPVTHDASSAEQQKAVSDMLM
CCCCHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
GKDDPPAIKKPKKDVGVFQEGLHEFLKWDSKILDWMSVGLSALNGIPIIGEITDAASIAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
ESEAQAAQVVDTAIQGGDMSLALKLAGINMAGAVVGAVGGPTARIGAKAVAKGVAEAAAK
HHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
GTAKGVAKGAGRTAAERPSAAEFAKGYVGGTAISKSVEILKTPVLAGLHYEEYRLDKQKE
HHHHHHHHCCCCCHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHC
GEIHQKMENAGGIPMGKQIVPTNVANNFEGDLRQNLRNIRVRRR
CHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GAPVRPYKRKLIRRCFCQFCHCEAAHMSLNTLSTGSNPSQLLGTPLNESDSSELLGSDS
CCCCCHHHHHHHHHHHHHHHCCHHHHHEHHHCCCCCCHHHHHCCCCCCCCCHHHHCCCC
SKDDSDLPSTMDDIFLLIYQLLAALQTNAPTSTSGNGSADAPTSAPSGDASTPSSASDDQ
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
ANQPIEKRTSWPSLGYDFDPKDIKGKDAPPALEGSTVTWNGGTLTPSELQIVSTLNAHKD
HCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
QMPLEYKNLDDKINDPSTPADLKAALQGLKQDPRLFFAIGSQGDGKCGGKIKAQDLWDFS
CCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEHHHCCCCC
DSHPQVKAMGGKNDQFNPKDIKGSTPPPAVDGSSVTWDGGTLTQNELEIVSTLNRHKDQC
CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
PLKWSDLDAKINDPSTPPDLKKALTDLQSDPRLFFAIGSQGDGKCGGKIKDGDLGKFVSH
CCEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH
HAQVAEYADKQAKNYTQNYVASDSPDKTKASVMNESDAMRELYRYSDYLPDDLNQDTFKS
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHH
LVDGESSTKKCPPQVIAAAQYFRDHPDQWKALAGDSGSMSKPDFLQKASSEIHLTADEQK
HHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHCCCCEEEECCHHH
TLDTINSHQDAFYGDGKEVTRDKLDSISKDDKADPAVKEAATQLLNDPLLFGLLNNSITG
HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEHHHHCCCCC
YKKPHRFFGGGHVVDSGKISQDDFRRFYDNMSAANKTVDKPVTHDASSAEQQKAVSDMLM
CCCCHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
GKDDPPAIKKPKKDVGVFQEGLHEFLKWDSKILDWMSVGLSALNGIPIIGEITDAASIAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
ESEAQAAQVVDTAIQGGDMSLALKLAGINMAGAVVGAVGGPTARIGAKAVAKGVAEAAAK
HHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
GTAKGVAKGAGRTAAERPSAAEFAKGYVGGTAISKSVEILKTPVLAGLHYEEYRLDKQKE
HHHHHHHHCCCCCHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHC
GEIHQKMENAGGIPMGKQIVPTNVANNFEGDLRQNLRNIRVRRR
CHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]