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The map label for this gene is kduI

Identifier: 21240942

GI number: 21240942

Start: 207038

End: 207892

Strand: Direct

Name: kduI

Synonym: XAC0168

Alternate gene names: 21240942

Gene position: 207038-207892 (Clockwise)

Preceding gene: 21240941

Following gene: 21240943

Centisome position: 4.0

GC content: 63.39

Gene sequence:

>855_bases
ATGTCCCTGTACTGCAAGACCCATTACGCCACCCATCCCGACGCCATCAAGGGCGCCAGCAACGACGACCTGCGCGAGCT
GTATCTGCTCGATGGGCTGTTCGTGGACGACGCGGTGACGCTCAAATACACCCACTACGAGCGCTTCGTGCTCGGTGGCG
CCGCGCCGCTGGGCAGGACGCTGGAACTGCCCAGACAGACCGAGCCCGCCTCGGCCGCCGGGCATCCGTTTCTGGAGCGT
CGCGAGCTGGGCATTCTCAATGTCGGCGCAGGCACCGGCACGGTGATCGTGGACGGCACCGCCTACACGCTGGGGCCGAA
GGACGGCCTGTACGTGGCGATGGGCAGCACCGATGTCAGTTTTGCCTCCGAAGACGCGGGCAACCCGGCCAAGTTCTATC
TCGCCTCCACGCCGGCGCATGCGCGCTTTGAGACCAAGCAGCTCTCGATCAAGGATGCGGTGGCACTGGAGCGCGGTGCG
CTGGAAACCAGCAACGAACGCACCATTTACCAGTACATCGTGCCGGCCACCTGCCAGTCGTCGCAGCTGTTGCTCGGCCT
GACCGTGCTCAAGCCTGGCAGTGTCTGGAACACCATGCCGCCGCATCTGCACGACCGCCGCAGCGAGGTGTATTTCTATT
TCGACCTCGGCGCCGACGACCGCGTCTACCACTTCATGGGCGAACCCGATGCGCAGCGCCACATCGTGATTCAGAACAAC
GAAGCGGTGGTGTCGCCGCCGTGGTCCATCCACATGGGCGCCGGCACCTCCAATTACGCCTTCATCTGGGCAATGGGCGG
CGAAAACCTGGATTACACCGACATGCATGTGCTGGATATCTGCCAGCTCAAGTAA

Upstream 100 bases:

>100_bases
ACACCCATTTCGTGCACTGCGCAATGACACCGGTTAACCAGAGTCGGTAGAATGGCCCGGTGCAAGCCACTGCCCCCGCG
CTTGGCACCGGAGATCGCGC

Downstream 100 bases:

>100_bases
GGCCTGCGTCCACGCGCCTGCACGCAGGCGGCCGCGCCATGACGCCGCTTTGTTCAAGCCGGTGCCAGTCACGCCGGCGC
GATTCAGATGCGCCTTCGGC

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSLYCKTHYATHPDAIKGASNDDLRELYLLDGLFVDDAVTLKYTHYERFVLGGAAPLGRTLELPRQTEPASAAGHPFLER
RELGILNVGAGTGTVIVDGTAYTLGPKDGLYVAMGSTDVSFASEDAGNPAKFYLASTPAHARFETKQLSIKDAVALERGA
LETSNERTIYQYIVPATCQSSQLLLGLTVLKPGSVWNTMPPHLHDRRSEVYFYFDLGADDRVYHFMGEPDAQRHIVIQNN
EAVVSPPWSIHMGAGTSNYAFIWAMGGENLDYTDMHVLDICQLK

Sequences:

>Translated_284_residues
MSLYCKTHYATHPDAIKGASNDDLRELYLLDGLFVDDAVTLKYTHYERFVLGGAAPLGRTLELPRQTEPASAAGHPFLER
RELGILNVGAGTGTVIVDGTAYTLGPKDGLYVAMGSTDVSFASEDAGNPAKFYLASTPAHARFETKQLSIKDAVALERGA
LETSNERTIYQYIVPATCQSSQLLLGLTVLKPGSVWNTMPPHLHDRRSEVYFYFDLGADDRVYHFMGEPDAQRHIVIQNN
EAVVSPPWSIHMGAGTSNYAFIWAMGGENLDYTDMHVLDICQLK
>Mature_283_residues
SLYCKTHYATHPDAIKGASNDDLRELYLLDGLFVDDAVTLKYTHYERFVLGGAAPLGRTLELPRQTEPASAAGHPFLERR
ELGILNVGAGTGTVIVDGTAYTLGPKDGLYVAMGSTDVSFASEDAGNPAKFYLASTPAHARFETKQLSIKDAVALERGAL
ETSNERTIYQYIVPATCQSSQLLLGLTVLKPGSVWNTMPPHLHDRRSEVYFYFDLGADDRVYHFMGEPDAQRHIVIQNNE
AVVSPPWSIHMGAGTSNYAFIWAMGGENLDYTDMHVLDICQLK

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=275, Percent_Identity=44, Blast_Score=250, Evalue=6e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_XANAC (Q8PR01)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_640524.1
- ProteinModelPortal:   Q8PR01
- SMR:   Q8PR01
- GeneID:   1154239
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC0168
- NMPDR:   fig|190486.1.peg.168
- HOGENOM:   HBG301328
- OMA:   MPAHTHD
- ProtClustDB:   PRK00924
- BioCyc:   XAXO190486:XAC0168-MONOMER
- BRENDA:   5.3.1.17
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 31248; Mature: 31116

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYCKTHYATHPDAIKGASNDDLRELYLLDGLFVDDAVTLKYTHYERFVLGGAAPLGRT
CEEEEECCCCCCCHHHCCCCCCCHHEEEEECCEEECCEEEEEEEEEEEEEECCCCCCCCE
LELPRQTEPASAAGHPFLERRELGILNVGAGTGTVIVDGTAYTLGPKDGLYVAMGSTDVS
EECCCCCCCCCCCCCCCHHHCCCCEEEECCCCCEEEECCEEEEECCCCCEEEEECCCCCE
FASEDAGNPAKFYLASTPAHARFETKQLSIKDAVALERGALETSNERTIYQYIVPATCQS
ECCCCCCCCEEEEEECCCCCCEEEEEEEEHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC
SQLLLGLTVLKPGSVWNTMPPHLHDRRSEVYFYFDLGADDRVYHFMGEPDAQRHIVIQNN
CEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECC
EAVVSPPWSIHMGAGTSNYAFIWAMGGENLDYTDMHVLDICQLK
CEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
SLYCKTHYATHPDAIKGASNDDLRELYLLDGLFVDDAVTLKYTHYERFVLGGAAPLGRT
EEEEECCCCCCCHHHCCCCCCCHHEEEEECCEEECCEEEEEEEEEEEEEECCCCCCCCE
LELPRQTEPASAAGHPFLERRELGILNVGAGTGTVIVDGTAYTLGPKDGLYVAMGSTDVS
EECCCCCCCCCCCCCCCHHHCCCCEEEECCCCCEEEECCEEEEECCCCCEEEEECCCCCE
FASEDAGNPAKFYLASTPAHARFETKQLSIKDAVALERGALETSNERTIYQYIVPATCQS
ECCCCCCCCEEEEEECCCCCCEEEEEEEEHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC
SQLLLGLTVLKPGSVWNTMPPHLHDRRSEVYFYFDLGADDRVYHFMGEPDAQRHIVIQNN
CEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEECC
EAVVSPPWSIHMGAGTSNYAFIWAMGGENLDYTDMHVLDICQLK
CEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217